Wall clock time and date at job start Mon Mar 30 2020 03:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46742 * 2 1 4 4 C 1.50703 * 109.47055 * 240.00456 * 2 1 3 5 5 H 1.07998 * 119.99942 * 239.99735 * 4 2 1 6 6 C 1.37874 * 119.99887 * 59.99838 * 4 2 1 7 7 N 1.31513 * 120.00416 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99569 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47377 * 60.00230 * 8 6 4 10 10 H 1.48502 * 109.46769 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47176 * 299.99843 * 8 6 4 12 12 C 1.50697 * 109.47150 * 120.00057 * 2 1 3 13 13 C 1.39375 * 119.48909 * 60.00361 * 12 2 1 14 14 C 1.36166 * 121.08804 * 179.97438 * 13 12 2 15 15 C 1.40376 * 119.51611 * 359.97438 * 14 13 12 16 16 C 1.40431 * 122.08110 * 180.02562 * 15 14 13 17 17 N 1.31238 * 119.88079 * 180.02562 * 16 15 14 18 18 C 1.32610 * 122.77711 * 0.02562 * 17 16 15 19 19 C 1.36179 * 121.87722 * 359.96330 * 18 17 16 20 20 C 1.40681 * 118.66549 * 0.03320 * 19 18 17 21 21 C 1.36210 * 119.49448 * 239.97727 * 12 2 1 22 22 H 1.09003 * 109.47004 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47226 * 299.99517 * 1 2 3 24 24 H 1.09006 * 109.47166 * 59.99560 * 1 2 3 25 25 H 0.96994 * 119.99930 * 179.97438 * 7 6 4 26 26 H 1.08002 * 119.45768 * 359.69213 * 13 12 2 27 27 H 1.08005 * 120.24698 * 179.97438 * 14 13 12 28 28 H 1.08001 * 120.05833 * 0.05487 * 16 15 14 29 29 H 1.08005 * 119.06086 * 179.97438 * 18 17 16 30 30 H 1.07997 * 120.66591 * 180.02562 * 19 18 17 31 31 H 1.08001 * 120.26045 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8304 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0079 10 1 1.8269 -0.4196 -5.2204 11 1 3.8064 -1.1207 -4.0082 12 6 2.0323 -0.7104 1.2304 13 6 1.6892 -2.0448 1.4403 14 6 2.1254 -2.7183 2.5405 15 6 2.9346 -2.0591 3.4792 16 6 3.4147 -2.7016 4.6319 17 7 4.1681 -2.0435 5.4814 18 6 4.5080 -0.7738 5.3056 19 6 4.0941 -0.0622 4.2207 20 6 3.2827 -0.7000 3.2648 21 6 2.8151 -0.0387 2.1200 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.7095 1.1620 -3.4843 26 1 1.0632 -2.5518 0.7209 27 1 1.8509 -3.7522 2.6898 28 1 3.1648 -3.7355 4.8187 29 1 5.1309 -0.2904 6.0437 30 1 4.3830 0.9710 4.0969 31 1 3.0736 0.9953 1.9452 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261207575.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:20 Heat of formation + Delta-G solvation = 22.448583 kcal Electronic energy + Delta-G solvation = -14681.942357 eV Core-core repulsion = 12312.822420 eV Total energy + Delta-G solvation = -2369.119938 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.63643 -38.81378 -35.93673 -33.85837 -33.27764 -30.67701 -30.14381 -27.23670 -25.06784 -24.66843 -23.06436 -21.99798 -18.80552 -18.21304 -17.69488 -17.33143 -16.57927 -15.74683 -15.31779 -15.13690 -14.95294 -14.45361 -14.22049 -13.60398 -13.45046 -13.39913 -13.12524 -12.81524 -12.52637 -12.21304 -12.20133 -11.84400 -11.42260 -11.10292 -11.01345 -10.49056 -10.38533 -9.64199 -8.89498 -8.11903 -6.26520 -0.45577 0.06717 1.09292 1.42424 1.42919 1.50745 2.23571 2.43910 3.15392 3.24898 3.59440 3.72859 3.93404 4.01839 4.11337 4.33464 4.43828 4.56206 4.74116 4.84949 4.90119 4.92932 5.11280 5.13490 5.26794 5.28812 5.49527 5.56576 5.65536 5.78606 5.98295 6.02449 6.09643 6.31924 6.81612 7.07043 7.41737 8.92400 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.043550 B = 0.006440 C = 0.006310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.783865 B = 4347.064168 C = 4436.593523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.067 3.933 3 H 0.005 0.995 4 C -0.524 4.524 5 H 0.053 0.947 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.954 3.046 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.275 1.275 12 C -0.028 4.028 13 C -0.116 4.116 14 C -0.084 4.084 15 C -0.140 4.140 16 C 0.150 3.850 17 N -0.518 5.518 18 C 0.066 3.934 19 C -0.166 4.166 20 C -0.034 4.034 21 C -0.152 4.152 22 H 0.037 0.963 23 H 0.023 0.977 24 H 0.060 0.940 25 H 0.263 0.737 26 H 0.124 0.876 27 H 0.166 0.834 28 H 0.193 0.807 29 H 0.176 0.824 30 H 0.151 0.849 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 -5.260 11.340 12.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.048 3.952 3 H 0.023 0.977 4 C -0.562 4.562 5 H 0.071 0.929 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.779 3.221 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.201 1.201 12 C -0.029 4.029 13 C -0.134 4.134 14 C -0.104 4.104 15 C -0.142 4.142 16 C -0.021 4.021 17 N -0.226 5.226 18 C -0.077 4.077 19 C -0.186 4.186 20 C -0.039 4.039 21 C -0.170 4.170 22 H 0.056 0.944 23 H 0.042 0.958 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.142 0.858 27 H 0.183 0.817 28 H 0.210 0.790 29 H 0.194 0.806 30 H 0.168 0.832 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.512 -5.426 12.003 13.633 hybrid contribution -0.151 0.601 -2.039 2.131 sum 3.361 -4.825 9.964 11.570 Atomic orbital electron populations 1.21625 0.97019 0.99599 0.99763 1.17851 0.93470 0.94062 0.89800 0.97666 1.21302 1.31379 1.12526 0.90967 0.92866 1.25697 0.95163 0.95651 1.01755 1.69996 1.37402 1.23922 1.24191 0.85674 0.78613 0.79001 0.78774 1.19281 1.20888 1.20082 1.20345 0.93106 0.94742 0.94692 1.20974 1.00386 0.94021 0.97977 1.21270 0.95763 1.00901 0.92440 1.19249 1.01920 0.94380 0.98625 1.23604 0.90549 1.00445 0.87525 1.67465 1.13713 1.10143 1.31298 1.22515 0.98278 0.89988 0.96876 1.22093 0.99161 1.02156 0.95146 1.18438 0.96545 0.93973 0.94928 1.20908 1.01057 1.00352 0.94670 0.94415 0.95751 0.92084 0.92825 0.85781 0.81667 0.79016 0.80648 0.83178 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.78 71.98 0.63 -5.18 16 2 C 0.07 3.31 2.46 -12.29 -0.03 3.28 16 3 H 0.01 0.28 7.82 -2.39 -0.02 0.27 16 4 C -0.52 -28.12 8.22 25.60 0.21 -27.91 16 5 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -51.77 11.32 21.45 0.24 -51.53 16 8 Si 0.95 42.70 29.54 68.60 2.03 44.72 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 C -0.03 -1.16 4.71 -20.06 -0.09 -1.26 16 13 C -0.12 -4.25 8.58 22.06 0.19 -4.06 16 14 C -0.08 -2.48 9.81 22.31 0.22 -2.26 16 15 C -0.14 -4.26 5.74 -21.31 -0.12 -4.38 16 16 C 0.15 3.82 11.05 85.32 0.94 4.77 16 17 N -0.52 -14.19 10.30 -195.52 -2.01 -16.20 16 18 C 0.07 1.67 11.07 84.10 0.93 2.60 16 19 C -0.17 -4.63 9.88 22.39 0.22 -4.41 16 20 C -0.03 -1.14 5.75 -21.29 -0.12 -1.26 16 21 C -0.15 -5.85 9.41 22.28 0.21 -5.64 16 22 H 0.04 1.67 7.33 -2.39 -0.02 1.66 16 23 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 3.21 6.07 -2.38 -0.01 3.20 16 25 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 26 H 0.12 4.57 7.50 -2.91 -0.02 4.55 16 27 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 28 H 0.19 3.35 8.06 -2.91 -0.02 3.33 16 29 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 30 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.12 4.55 7.90 -2.91 -0.02 4.52 16 Total: -1.00 -61.67 266.14 5.01 -56.66 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.12 Total: 10.72 kcal Atomic # 6 Polarization: -48.01 SS G_CDS: 3.63 Total: -44.38 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -1.77 Total: -67.73 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -61.67 5.01 -56.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207575.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.107 kcal (2) G-P(sol) polarization free energy of solvation -61.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds