Wall clock time and date at job start Mon Mar 30 2020 02:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99878 * 2 1 4 4 H 1.48503 * 109.46721 * 239.99889 * 3 2 1 5 5 H 1.48500 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46884 * 120.00129 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99881 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.36705 * 302.16430 * 9 7 2 11 11 C 1.54640 * 110.32215 * 64.33937 * 9 7 2 12 12 C 1.54950 * 102.92091 * 140.86847 * 11 9 7 13 13 N 1.48567 * 103.25355 * 322.68858 * 12 11 9 14 14 C 1.47717 * 105.80916 * 39.01872 * 13 12 11 15 15 C 1.52388 * 109.92265 * 94.20013 * 14 13 12 16 16 C 1.52594 * 110.82263 * 51.30263 * 15 14 13 17 17 C 1.53090 * 109.97935 * 70.18401 * 16 15 14 18 18 S 1.81753 * 108.86004 * 296.72933 * 17 16 15 19 19 C 1.52923 * 109.62105 * 216.00632 * 14 13 12 20 20 H 0.96999 * 120.00042 * 359.97438 * 1 2 3 21 21 H 1.09001 * 110.72264 * 22.51410 * 11 9 7 22 22 H 1.08994 * 110.87338 * 259.30039 * 11 9 7 23 23 H 1.09001 * 110.66218 * 204.24478 * 12 11 9 24 24 H 1.09004 * 110.66189 * 81.12854 * 12 11 9 25 25 H 1.00903 * 110.99751 * 278.51638 * 13 12 11 26 26 H 1.08991 * 109.20726 * 290.95673 * 15 14 13 27 27 H 1.09000 * 109.20080 * 171.65024 * 15 14 13 28 28 H 1.08995 * 109.38843 * 310.02387 * 16 15 14 29 29 H 1.09003 * 109.38209 * 190.33536 * 16 15 14 30 30 H 1.08997 * 109.57207 * 176.91702 * 17 16 15 31 31 H 1.08998 * 109.68027 * 56.60619 * 17 16 15 32 32 H 1.08996 * 109.56723 * 181.19257 * 19 14 13 33 33 H 1.09004 * 109.56791 * 60.83422 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5899 -2.5554 0.8653 11 6 0.4391 -2.6505 -1.3069 12 6 0.6045 -4.1535 -1.6453 13 7 2.0068 -4.4400 -1.2471 14 6 2.2333 -3.6832 0.0011 15 6 1.9654 -4.5768 1.2060 16 6 2.7341 -5.8898 1.0893 17 6 4.2331 -5.6361 1.2693 18 16 4.8137 -4.5646 -0.0791 19 6 3.6689 -3.1569 0.0292 20 1 -0.4850 0.8400 0.0004 21 1 0.8605 -2.0287 -2.0967 22 1 -0.6101 -2.4052 -1.1431 23 1 0.4651 -4.3250 -2.7127 24 1 -0.0916 -4.7577 -1.0635 25 1 2.6530 -4.1523 -1.9667 26 1 0.8981 -4.7900 1.2640 27 1 2.2766 -4.0584 2.1130 28 1 2.5565 -6.3269 0.1067 29 1 2.3891 -6.5806 1.8586 30 1 4.7700 -6.5842 1.2393 31 1 4.4101 -5.1465 2.2268 32 1 3.8415 -2.6167 0.9600 33 1 3.8297 -2.4896 -0.8175 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261264026.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:05 Heat of formation + Delta-G solvation = -4.453637 kcal Electronic energy + Delta-G solvation = -14766.237756 eV Core-core repulsion = 12531.395202 eV Total energy + Delta-G solvation = -2234.842554 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.93465 -34.23752 -32.71248 -30.51839 -28.84675 -26.94557 -25.03533 -23.66319 -21.59520 -19.79093 -18.37400 -16.52532 -15.80548 -15.32732 -14.58252 -14.28130 -13.96279 -13.76794 -12.81539 -12.75042 -12.47403 -12.31100 -11.51481 -11.43828 -11.12142 -10.97359 -10.86971 -10.76007 -10.56161 -10.40627 -9.95374 -9.71489 -9.43855 -8.94766 -8.75725 -8.47559 -7.74225 -7.05887 -6.10916 -4.15147 2.38543 3.12155 3.25267 3.30751 3.33085 4.35267 5.02326 5.22629 5.25165 5.29292 5.49566 5.56032 5.80395 5.94932 5.99755 6.10340 6.21987 6.27732 6.33770 6.49533 6.56403 6.58625 6.75652 6.84398 7.05809 7.14003 7.47336 7.53135 7.79699 7.92994 8.10241 8.31363 8.86303 9.50632 10.98644 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.031471 B = 0.010470 C = 0.008945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.494473 B = 2673.603553 C = 3129.613375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.068 0.932 9 C 0.040 3.960 10 H 0.035 0.965 11 C -0.124 4.124 12 C 0.031 3.969 13 N -0.657 5.657 14 C 0.102 3.898 15 C -0.098 4.098 16 C -0.115 4.115 17 C -0.070 4.070 18 S -0.308 6.308 19 C -0.045 4.045 20 H 0.261 0.739 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.333 0.667 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.853 -8.175 0.610 9.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.714 3.286 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.086 0.914 9 C 0.019 3.981 10 H 0.053 0.947 11 C -0.164 4.164 12 C -0.099 4.099 13 N -0.286 5.286 14 C 0.010 3.990 15 C -0.137 4.137 16 C -0.154 4.154 17 C -0.219 4.219 18 S -0.081 6.081 19 C -0.192 4.192 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.149 0.851 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.483 -8.907 0.206 9.973 hybrid contribution -0.589 2.265 0.552 2.404 sum 3.894 -6.642 0.758 7.737 Atomic orbital electron populations 1.69966 1.05950 1.26686 1.49677 1.24985 0.94768 0.99035 0.94798 0.86745 0.79712 0.83418 0.78712 1.20228 1.21311 1.20187 1.21407 0.93214 0.90273 1.51926 0.91382 1.19831 0.92409 0.91433 0.94441 0.94706 1.22997 1.01004 0.92820 0.99589 1.23182 0.91011 0.97142 0.98538 1.62920 1.03636 1.56485 1.05537 1.21590 0.93930 0.92954 0.90572 1.21374 1.00155 0.94910 0.97238 1.21646 0.92252 0.98176 1.03311 1.23278 0.99745 1.00593 0.98250 1.86498 1.48069 1.25444 1.48088 1.24040 0.94456 0.94136 1.06600 0.92964 0.92851 0.92312 0.92666 0.91858 0.85081 0.91932 0.92551 0.89038 0.92721 0.89165 0.90955 0.89330 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 12.63 55.43 0.70 -23.91 16 2 C 0.07 1.78 5.34 -17.82 -0.10 1.68 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -13.46 7.49 -34.44 -0.26 -13.72 16 8 H 0.07 1.67 4.66 -52.49 -0.24 1.43 16 9 C 0.04 0.93 2.48 -90.47 -0.22 0.71 16 10 H 0.03 0.90 7.63 -51.93 -0.40 0.51 16 11 C -0.12 -2.76 5.75 -24.84 -0.14 -2.90 16 12 C 0.03 0.57 7.54 -1.87 -0.01 0.55 16 13 N -0.66 -11.92 5.37 -96.98 -0.52 -12.44 16 14 C 0.10 1.97 0.68 -131.06 -0.09 1.88 16 15 C -0.10 -1.73 4.48 -27.25 -0.12 -1.85 16 16 C -0.12 -1.73 5.66 -26.89 -0.15 -1.89 16 17 C -0.07 -1.03 6.45 37.20 0.24 -0.79 16 18 S -0.31 -5.25 21.75 -107.50 -2.34 -7.59 16 19 C -0.04 -0.85 3.54 37.12 0.13 -0.72 16 20 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 21 H 0.05 1.27 7.86 -51.93 -0.41 0.86 16 22 H 0.06 1.40 8.12 -51.93 -0.42 0.97 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.33 6.08 8.24 -39.29 -0.32 5.76 16 26 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 27 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 28 H 0.09 1.48 7.15 -51.93 -0.37 1.11 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.77 7.41 -51.93 -0.38 1.38 16 33 H 0.11 2.23 6.77 -51.93 -0.35 1.88 16 LS Contribution 263.04 15.07 3.96 3.96 Total: -1.00 -26.09 263.04 -8.93 -35.03 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -4.99 Total: 6.37 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -0.73 Total: -17.04 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.18 Total: -36.35 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -2.34 Total: -7.59 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -26.09 -8.93 -35.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264026.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.573 kcal (2) G-P(sol) polarization free energy of solvation -26.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds