Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99992 * 2 1 4 4 H 1.48502 * 109.46710 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47254 * 59.99993 * 3 2 1 6 6 H 1.48498 * 109.47154 * 299.99862 * 3 2 1 7 7 C 1.37875 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00107 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00042 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.28300 * 333.58031 * 9 7 2 11 11 C 1.54634 * 110.32034 * 211.46635 * 9 7 2 12 12 C 1.54954 * 102.92592 * 219.13929 * 11 9 7 13 13 N 1.48581 * 103.24955 * 37.31339 * 12 11 9 14 14 C 1.47950 * 105.80283 * 320.91618 * 13 12 11 15 15 C 1.52381 * 109.94856 * 144.55361 * 14 13 12 16 16 C 1.52597 * 110.82935 * 51.40405 * 15 14 13 17 17 C 1.53077 * 109.97582 * 70.19780 * 16 15 14 18 18 S 1.81752 * 108.85560 * 296.73572 * 17 16 15 19 19 C 1.52915 * 109.70108 * 266.42114 * 14 13 12 20 20 H 0.97006 * 120.00382 * 179.97438 * 1 2 3 21 21 H 1.08998 * 110.72531 * 337.49828 * 11 9 7 22 22 H 1.09001 * 110.72694 * 100.77688 * 11 9 7 23 23 H 1.09002 * 110.66404 * 155.75283 * 12 11 9 24 24 H 1.09000 * 110.65760 * 278.87685 * 12 11 9 25 25 H 1.00903 * 111.00098 * 200.46959 * 13 12 11 26 26 H 1.08998 * 109.20630 * 171.75240 * 15 14 13 27 27 H 1.09004 * 109.20639 * 291.10440 * 15 14 13 28 28 H 1.08997 * 109.38391 * 190.35293 * 16 15 14 29 29 H 1.08999 * 109.38669 * 310.14806 * 16 15 14 30 30 H 1.09002 * 109.57630 * 56.55030 * 17 16 15 31 31 H 1.09001 * 109.57607 * 176.80170 * 17 16 15 32 32 H 1.09000 * 109.57089 * 60.74347 * 19 14 13 33 33 H 1.08996 * 109.57485 * 181.11002 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 1.2125 6 1 1.8904 2.3964 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.2688 -2.3684 0.4551 11 6 2.0533 -3.5825 0.7580 12 6 1.8147 -4.8522 -0.0976 13 7 1.8183 -4.3309 -1.4889 14 6 1.1085 -3.0339 -1.4350 15 6 1.7403 -2.0544 -2.4166 16 6 1.8557 -2.6764 -3.8053 17 6 0.4657 -2.8245 -4.4292 18 16 -0.5129 -3.9739 -3.4171 19 6 -0.3713 -3.2422 -1.7591 20 1 -0.4851 -0.8401 -0.0004 21 1 3.1131 -3.3292 0.7852 22 1 1.6621 -3.7178 1.7664 23 1 2.6221 -5.5702 0.0462 24 1 0.8512 -5.3020 0.1422 25 1 1.3538 -4.9706 -2.1160 26 1 1.1234 -1.1577 -2.4755 27 1 2.7347 -1.7828 -2.0623 28 1 2.4702 -2.0363 -4.4384 29 1 2.3208 -3.6588 -3.7242 30 1 -0.0272 -1.8527 -4.4579 31 1 0.5598 -3.2162 -5.4420 32 1 -0.8149 -3.9141 -1.0244 33 1 -0.8882 -2.2828 -1.7382 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261264030.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = -12.574475 kcal Electronic energy + Delta-G solvation = -14980.678024 eV Core-core repulsion = 12745.483324 eV Total energy + Delta-G solvation = -2235.194700 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.94314 -34.12829 -33.11404 -30.11822 -29.16179 -26.84882 -25.02513 -23.24881 -21.45701 -20.16318 -18.59915 -16.53344 -15.94609 -15.65000 -14.50636 -14.31550 -13.79952 -13.53999 -13.08674 -12.90632 -12.63995 -12.29782 -11.65757 -11.35643 -11.14486 -11.04115 -10.84056 -10.63615 -10.46410 -10.18052 -10.05693 -9.63203 -9.42730 -9.16152 -8.49257 -8.41174 -7.84114 -7.30304 -6.41735 -4.08803 2.22311 2.93229 3.40321 3.41726 3.55931 4.46284 5.00116 5.24443 5.31510 5.38022 5.52464 5.55756 5.73681 5.77183 5.87555 6.07591 6.10023 6.19562 6.23701 6.36611 6.50319 6.69916 6.73119 6.89946 7.05268 7.09144 7.29591 7.50215 7.70457 8.10391 8.20622 8.39130 8.81328 9.58034 10.96083 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.027560 B = 0.012161 C = 0.010158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.733974 B = 2301.801677 C = 2755.843877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.022 3.978 3 Si 1.066 2.934 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.573 4.573 8 H 0.053 0.947 9 C 0.032 3.968 10 H 0.039 0.961 11 C -0.111 4.111 12 C 0.034 3.966 13 N -0.660 5.660 14 C 0.105 3.895 15 C -0.073 4.073 16 C -0.128 4.128 17 C -0.071 4.071 18 S -0.303 6.303 19 C -0.087 4.087 20 H 0.268 0.732 21 H 0.065 0.935 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.024 0.976 25 H 0.332 0.668 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.594 -5.727 -4.703 7.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.183 4.183 3 Si 0.895 3.105 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.611 4.611 8 H 0.071 0.929 9 C 0.011 3.989 10 H 0.058 0.942 11 C -0.150 4.150 12 C -0.095 4.095 13 N -0.292 5.292 14 C 0.011 3.989 15 C -0.111 4.111 16 C -0.167 4.167 17 C -0.219 4.219 18 S -0.075 6.075 19 C -0.237 4.237 20 H 0.080 0.920 21 H 0.084 0.916 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.043 0.957 25 H 0.151 0.849 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.500 -4.760 -5.076 7.119 hybrid contribution -0.356 -0.907 0.467 1.080 sum 1.144 -5.666 -4.609 7.393 Atomic orbital electron populations 1.70799 1.06851 1.30548 1.46656 1.25758 0.96489 1.02426 0.93599 0.83578 0.74738 0.75214 0.77016 1.21385 1.21401 1.21391 1.21825 0.94120 0.90758 1.54415 0.92905 1.19784 0.96433 0.94326 0.88389 0.94244 1.22567 1.01372 0.94115 0.96926 1.22999 0.98318 0.97603 0.90627 1.63278 1.54319 1.04759 1.06807 1.21985 0.86849 0.89796 1.00248 1.21186 1.03304 0.96387 0.90232 1.21892 0.93939 1.02695 0.98164 1.23405 0.98678 1.00241 0.99619 1.86334 1.69812 1.42450 1.08953 1.24376 1.03036 1.03644 0.92617 0.91964 0.91645 0.93306 0.91648 0.95727 0.84936 0.92073 0.89666 0.92104 0.90360 0.90368 0.88973 0.89474 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.63 13.64 55.43 0.76 -24.87 16 2 C 0.02 0.57 4.97 -17.82 -0.09 0.48 16 3 Si 1.07 24.17 29.90 -169.99 -5.08 19.09 16 4 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.57 -14.72 5.69 -34.44 -0.20 -14.91 16 8 H 0.05 1.40 7.55 -52.49 -0.40 1.00 16 9 C 0.03 0.74 2.48 -90.47 -0.22 0.51 16 10 H 0.04 1.00 5.91 -51.93 -0.31 0.69 16 11 C -0.11 -2.29 6.60 -24.84 -0.16 -2.46 16 12 C 0.03 0.62 7.53 -1.86 -0.01 0.60 16 13 N -0.66 -12.51 5.89 -96.82 -0.57 -13.08 16 14 C 0.10 2.15 0.70 -130.94 -0.09 2.06 16 15 C -0.07 -1.52 3.62 -27.25 -0.10 -1.62 16 16 C -0.13 -2.20 5.66 -26.90 -0.15 -2.35 16 17 C -0.07 -1.15 6.45 37.20 0.24 -0.91 16 18 S -0.30 -5.28 20.78 -107.50 -2.23 -7.52 16 19 C -0.09 -1.72 5.11 37.11 0.19 -1.53 16 20 H 0.27 7.48 6.12 -40.82 -0.25 7.23 16 21 H 0.06 1.39 7.76 -51.93 -0.40 0.99 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.33 5.97 6.79 -39.29 -0.27 5.71 16 26 H 0.06 1.42 7.57 -51.93 -0.39 1.03 16 27 H 0.08 1.94 6.71 -51.93 -0.35 1.59 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.36 7.06 -51.93 -0.37 0.99 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.09 1.96 7.74 -51.93 -0.40 1.56 16 LS Contribution 260.56 15.07 3.93 3.93 Total: -1.00 -26.43 260.56 -8.69 -35.12 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.89 Total: 7.45 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -0.60 Total: -20.12 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.19 Total: -37.95 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.08 Total: 19.09 kcal Atomic # 16 Polarization: -5.28 SS G_CDS: -2.23 Total: -7.52 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.43 -8.69 -35.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264030.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.550 kcal (2) G-P(sol) polarization free energy of solvation -26.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds