Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99992 * 2 1 4 4 H 1.48502 * 109.46710 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47254 * 59.99993 * 3 2 1 6 6 H 1.48498 * 109.47154 * 299.99862 * 3 2 1 7 7 C 1.37875 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00107 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00042 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.28300 * 333.58031 * 9 7 2 11 11 C 1.54634 * 110.32034 * 211.46635 * 9 7 2 12 12 C 1.54954 * 102.92592 * 219.13929 * 11 9 7 13 13 N 1.48581 * 103.24955 * 37.31339 * 12 11 9 14 14 C 1.47950 * 105.80283 * 320.91618 * 13 12 11 15 15 C 1.52381 * 109.94856 * 144.55361 * 14 13 12 16 16 C 1.52597 * 110.82935 * 51.40405 * 15 14 13 17 17 C 1.53077 * 109.97582 * 70.19780 * 16 15 14 18 18 S 1.81752 * 108.85560 * 296.73572 * 17 16 15 19 19 C 1.52915 * 109.70108 * 266.42114 * 14 13 12 20 20 H 0.97006 * 120.00382 * 179.97438 * 1 2 3 21 21 H 1.08998 * 110.72531 * 337.49828 * 11 9 7 22 22 H 1.09001 * 110.72694 * 100.77688 * 11 9 7 23 23 H 1.09002 * 110.66404 * 155.75283 * 12 11 9 24 24 H 1.09000 * 110.65760 * 278.87685 * 12 11 9 25 25 H 1.00903 * 111.00098 * 200.46959 * 13 12 11 26 26 H 1.08998 * 109.20630 * 171.75240 * 15 14 13 27 27 H 1.09004 * 109.20639 * 291.10440 * 15 14 13 28 28 H 1.08997 * 109.38391 * 190.35293 * 16 15 14 29 29 H 1.08999 * 109.38669 * 310.14806 * 16 15 14 30 30 H 1.09002 * 109.57630 * 56.55030 * 17 16 15 31 31 H 1.09001 * 109.57607 * 176.80170 * 17 16 15 32 32 H 1.09000 * 109.57089 * 60.74347 * 19 14 13 33 33 H 1.08996 * 109.57485 * 181.11002 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 1.2125 6 1 1.8904 2.3964 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.2688 -2.3684 0.4551 11 6 2.0533 -3.5825 0.7580 12 6 1.8147 -4.8522 -0.0976 13 7 1.8183 -4.3309 -1.4889 14 6 1.1085 -3.0339 -1.4350 15 6 1.7403 -2.0544 -2.4166 16 6 1.8557 -2.6764 -3.8053 17 6 0.4657 -2.8245 -4.4292 18 16 -0.5129 -3.9739 -3.4171 19 6 -0.3713 -3.2422 -1.7591 20 1 -0.4851 -0.8401 -0.0004 21 1 3.1131 -3.3292 0.7852 22 1 1.6621 -3.7178 1.7664 23 1 2.6221 -5.5702 0.0462 24 1 0.8512 -5.3020 0.1422 25 1 1.3538 -4.9706 -2.1160 26 1 1.1234 -1.1577 -2.4755 27 1 2.7347 -1.7828 -2.0623 28 1 2.4702 -2.0363 -4.4384 29 1 2.3208 -3.6588 -3.7242 30 1 -0.0272 -1.8527 -4.4579 31 1 0.5598 -3.2162 -5.4420 32 1 -0.8149 -3.9141 -1.0244 33 1 -0.8882 -2.2828 -1.7382 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261264030.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = -27.854582 kcal Electronic energy + Delta-G solvation = -14981.340619 eV Core-core repulsion = 12745.483324 eV Total energy + Delta-G solvation = -2235.857296 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.60618 -35.63512 -35.06166 -31.65902 -30.94584 -28.44645 -26.73158 -25.10045 -22.94069 -21.82977 -20.35313 -18.35581 -17.53700 -17.18079 -16.12045 -15.78750 -15.65088 -15.29722 -14.67679 -14.44638 -14.19476 -13.83776 -13.27797 -13.10738 -12.71535 -12.65192 -12.61337 -12.33077 -12.11137 -11.95980 -11.67355 -11.35310 -11.04407 -10.81864 -10.42358 -10.33900 -9.38389 -8.73467 -8.52354 -6.18840 0.78253 1.48492 1.53456 1.59774 1.75827 2.57338 3.24015 3.43168 3.84815 3.87989 3.95856 4.08313 4.18136 4.27983 4.44948 4.51675 4.56462 4.63408 4.73870 4.84149 4.95305 5.01186 5.16122 5.19372 5.38186 5.45756 5.51966 5.76551 6.02091 6.19221 6.30193 6.62975 6.74147 7.53629 8.85966 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.027560 B = 0.012161 C = 0.010158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.733974 B = 2301.801677 C = 2755.843877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.021 4.021 3 Si 1.103 2.897 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.570 4.570 8 H 0.041 0.959 9 C 0.020 3.980 10 H 0.012 0.988 11 C -0.111 4.111 12 C 0.041 3.959 13 N -0.658 5.658 14 C 0.112 3.888 15 C -0.067 4.067 16 C -0.119 4.119 17 C -0.071 4.071 18 S -0.278 6.278 19 C -0.087 4.087 20 H 0.258 0.742 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.092 0.908 24 H 0.036 0.964 25 H 0.341 0.659 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 -6.963 -6.016 9.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.220 4.220 3 Si 0.927 3.073 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.609 4.609 8 H 0.059 0.941 9 C -0.001 4.001 10 H 0.030 0.970 11 C -0.150 4.150 12 C -0.088 4.088 13 N -0.290 5.290 14 C 0.018 3.982 15 C -0.105 4.105 16 C -0.158 4.158 17 C -0.219 4.219 18 S -0.051 6.051 19 C -0.237 4.237 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.110 0.890 24 H 0.054 0.946 25 H 0.161 0.839 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.106 0.894 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.295 -6.019 -6.389 9.073 hybrid contribution -0.587 -0.564 0.880 1.199 sum 1.708 -6.584 -5.509 8.753 Atomic orbital electron populations 1.70890 1.07705 1.30021 1.49168 1.26826 0.96508 1.05410 0.93269 0.83092 0.74600 0.72470 0.77134 1.19832 1.21110 1.20942 1.21988 0.93553 0.92077 1.53242 0.94079 1.19811 0.95087 0.94538 0.90664 0.96996 1.22506 1.00173 0.94700 0.97580 1.23012 0.99928 0.96626 0.89223 1.63265 1.53937 1.04148 1.07655 1.21676 0.87663 0.90596 0.98231 1.21012 1.00989 0.95618 0.92896 1.21787 0.95110 1.02931 0.95969 1.23513 0.97460 1.00005 1.00932 1.86230 1.70252 1.41876 1.06701 1.24139 1.01972 1.02507 0.95121 0.93038 0.92617 0.92711 0.89024 0.94589 0.83908 0.95308 0.92064 0.90107 0.89769 0.90953 0.85462 0.89384 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.58 13.64 21.45 0.29 -54.29 16 2 C -0.02 -1.16 4.97 84.65 0.42 -0.74 16 3 Si 1.10 49.25 29.90 68.60 2.05 51.30 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.57 -30.00 5.69 25.60 0.15 -29.85 16 8 H 0.04 2.22 7.55 -2.91 -0.02 2.19 16 9 C 0.02 0.95 2.48 -10.70 -0.03 0.93 16 10 H 0.01 0.62 5.91 -2.38 -0.01 0.61 16 11 C -0.11 -4.52 6.60 31.82 0.21 -4.31 16 12 C 0.04 1.40 7.53 86.65 0.65 2.05 16 13 N -0.66 -23.64 5.89 -460.24 -2.71 -26.35 16 14 C 0.11 4.59 0.70 3.38 0.00 4.59 16 15 C -0.07 -2.78 3.62 30.26 0.11 -2.67 16 16 C -0.12 -3.82 5.66 30.49 0.17 -3.65 16 17 C -0.07 -2.10 6.45 72.01 0.46 -1.64 16 18 S -0.28 -9.10 20.78 -56.49 -1.17 -10.28 16 19 C -0.09 -3.44 5.11 71.95 0.37 -3.07 16 20 H 0.26 15.11 6.12 -92.70 -0.57 14.55 16 21 H 0.06 2.35 7.76 -2.39 -0.02 2.33 16 22 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 23 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 24 H 0.04 1.15 8.14 -2.39 -0.02 1.14 16 25 H 0.34 11.30 6.79 -89.69 -0.61 10.69 16 26 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16 27 H 0.06 2.81 6.71 -2.38 -0.02 2.79 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.08 2.65 7.06 -2.39 -0.02 2.63 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 33 H 0.06 2.73 7.74 -2.39 -0.02 2.71 16 Total: -1.00 -57.35 260.56 1.67 -55.68 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.68 Total: 22.31 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 2.52 Total: -38.38 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -2.42 Total: -80.64 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 2.05 Total: 51.30 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.17 Total: -10.28 kcal Total: -57.35 1.67 -55.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264030.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.825 kcal (2) G-P(sol) polarization free energy of solvation -57.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds