Wall clock time and date at job start Mon Mar 30 2020 02:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.47340 * 110.99822 * 66.04663 * 10 9 7 12 12 C 1.52854 * 112.07310 * 166.98052 * 11 10 9 13 13 S 1.82409 * 109.89847 * 58.08973 * 12 11 10 14 14 C 1.81095 * 100.51224 * 309.82051 * 13 12 11 15 15 H 1.09001 * 110.89217 * 293.44129 * 14 13 12 16 16 C 1.52858 * 113.98009 * 167.40071 * 14 13 12 17 17 C 1.54915 * 105.30305 * 215.90912 * 16 14 13 18 18 C 1.55387 * 106.41684 * 3.86055 * 17 16 14 19 19 C 1.44660 * 111.00268 * 302.99357 * 10 9 7 20 20 H 1.08999 * 109.56265 * 79.72409 * 19 10 9 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.08995 * 108.95872 * 287.65127 * 11 10 9 25 25 H 1.09000 * 108.95977 * 46.40458 * 11 10 9 26 26 H 1.09004 * 109.39313 * 178.21438 * 12 11 10 27 27 H 1.08998 * 109.40302 * 297.95431 * 12 11 10 28 28 H 1.08996 * 110.28053 * 334.86120 * 16 14 13 29 29 H 1.08996 * 110.28228 * 96.95319 * 16 14 13 30 30 H 1.08996 * 110.06958 * 123.10096 * 17 16 14 31 31 H 1.09002 * 110.06448 * 244.56709 * 17 16 14 32 32 H 1.08997 * 110.73964 * 142.14177 * 18 17 16 33 33 H 1.09003 * 110.74061 * 265.29063 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 2.9731 -3.6541 1.2576 12 6 3.7353 -4.9684 1.4253 13 16 4.8667 -5.2142 0.0157 14 6 3.7350 -4.9311 -1.3695 15 1 2.9769 -5.7127 -1.4180 16 6 4.4340 -4.7636 -2.7185 17 6 3.5991 -3.7063 -3.4832 18 6 2.4950 -3.2247 -2.5015 19 6 3.1014 -3.5319 -1.1322 20 1 3.8877 -2.8067 -0.9227 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 3.6848 -2.8287 1.2633 25 1 2.2864 -3.5351 2.0957 26 1 4.3110 -4.9375 2.3504 27 1 3.0264 -5.7952 1.4690 28 1 5.4538 -4.4071 -2.5739 29 1 4.4368 -5.7082 -3.2624 30 1 4.2325 -2.8683 -3.7739 31 1 3.1452 -4.1556 -4.3665 32 1 2.3181 -2.1551 -2.6143 33 1 1.5725 -3.7852 -2.6529 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306711918.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:52 Heat of formation + Delta-G solvation = -6.876842 kcal Electronic energy + Delta-G solvation = -14562.955320 eV Core-core repulsion = 12328.007688 eV Total energy + Delta-G solvation = -2234.947632 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.78634 -35.36177 -32.72031 -30.40619 -28.28978 -27.51794 -25.61545 -22.72485 -21.36998 -20.19410 -19.12183 -16.73768 -16.14449 -15.38019 -14.87782 -14.44008 -14.03301 -13.64373 -13.27934 -13.06516 -12.44227 -12.29218 -11.95596 -11.32054 -11.16092 -10.90558 -10.85175 -10.73509 -10.58213 -10.34071 -10.17456 -10.12091 -9.92389 -9.72643 -9.10231 -8.48958 -7.41330 -7.22912 -6.08650 -4.17588 2.20358 2.89911 3.22831 3.31720 3.35601 4.36334 4.70780 4.91695 5.12471 5.22828 5.28732 5.48077 5.57735 5.76803 5.79087 5.81468 5.90156 6.00393 6.13059 6.26271 6.33519 6.36097 6.54140 6.61466 6.79922 6.88758 7.18186 7.46561 7.84025 7.93960 8.16310 8.24008 8.92189 9.49818 10.96658 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.029713 B = 0.009736 C = 0.008613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.136596 B = 2875.133928 C = 3250.062283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.189 3.811 10 N -0.536 5.536 11 C 0.060 3.940 12 C -0.066 4.066 13 S -0.295 6.295 14 C -0.053 4.053 15 H 0.094 0.906 16 C -0.100 4.100 17 C -0.119 4.119 18 C -0.106 4.106 19 C 0.102 3.898 20 H 0.054 0.946 21 H 0.262 0.738 22 H 0.029 0.971 23 H 0.037 0.963 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.286 -8.035 -2.618 10.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.587 4.587 8 H 0.075 0.925 9 C 0.064 3.936 10 N -0.260 5.260 11 C -0.070 4.070 12 C -0.215 4.215 13 S -0.066 6.066 14 C -0.182 4.182 15 H 0.112 0.888 16 C -0.139 4.139 17 C -0.158 4.158 18 C -0.145 4.145 19 C -0.010 4.010 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.048 0.952 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.982 -8.649 -2.606 11.417 hybrid contribution -0.372 2.023 0.203 2.067 sum 6.610 -6.626 -2.403 9.663 Atomic orbital electron populations 1.69948 1.05988 1.26769 1.50076 1.24939 0.94729 0.99097 0.94858 0.86624 0.80250 0.84001 0.77713 1.19771 1.20902 1.20947 1.21753 0.93316 0.91904 1.51725 0.92491 1.19774 0.90486 0.85132 0.98173 1.62056 1.16685 1.47034 1.00196 1.22052 0.96813 0.93964 0.94139 1.23482 0.99211 1.01912 0.96887 1.86481 1.22249 1.93781 1.04110 1.24057 0.97912 1.02223 0.94021 0.88786 1.21853 0.99206 0.99413 0.93443 1.22493 0.97419 0.97903 0.98003 1.22066 0.97210 1.02496 0.92721 1.21923 0.94949 0.91973 0.92122 0.92794 0.92831 0.95239 0.94495 0.93416 0.90434 0.88453 0.89944 0.91229 0.91534 0.91743 0.91883 0.89904 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.55 -14.51 7.44 -34.44 -0.26 -14.76 16 8 H 0.06 1.53 5.97 -52.49 -0.31 1.22 16 9 C 0.19 4.69 4.74 -4.97 -0.02 4.66 16 10 N -0.54 -11.21 4.75 -228.05 -1.08 -12.30 16 11 C 0.06 1.15 4.86 -3.66 -0.02 1.13 16 12 C -0.07 -1.06 6.65 37.08 0.25 -0.81 16 13 S -0.29 -4.92 21.88 -107.50 -2.35 -7.27 16 14 C -0.05 -0.88 3.17 -25.52 -0.08 -0.96 16 15 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 16 C -0.10 -1.43 6.47 -25.79 -0.17 -1.60 16 17 C -0.12 -1.71 6.87 -24.45 -0.17 -1.88 16 18 C -0.11 -1.91 5.20 -25.53 -0.13 -2.04 16 19 C 0.10 1.96 1.11 -67.70 -0.08 1.89 16 20 H 0.05 1.18 6.58 -51.93 -0.34 0.84 16 21 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 22 H 0.03 0.79 7.97 -51.93 -0.41 0.37 16 23 H 0.04 0.98 7.35 -51.93 -0.38 0.59 16 24 H 0.05 1.00 6.90 -51.93 -0.36 0.64 16 25 H 0.08 1.47 7.90 -51.93 -0.41 1.06 16 26 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.07 1.00 7.97 -51.93 -0.41 0.59 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.68 7.79 -51.93 -0.40 1.28 16 33 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 LS Contribution 266.46 15.07 4.02 4.02 Total: -1.00 -27.59 266.46 -9.61 -37.20 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.13 Total: -0.32 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -0.77 Total: -12.65 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.35 Total: -37.01 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -2.35 Total: -7.27 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.59 -9.61 -37.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306711918.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.321 kcal (2) G-P(sol) polarization free energy of solvation -27.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds