Wall clock time and date at job start Mon Mar 30 2020 02:59:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86797 * 120.00353 * 2 1
4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1
5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1
6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1
7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1
10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2
11 11 C 1.47340 * 110.99822 * 66.04663 * 10 9 7
12 12 C 1.52854 * 112.07310 * 166.98052 * 11 10 9
13 13 S 1.82409 * 109.89847 * 58.08973 * 12 11 10
14 14 C 1.81095 * 100.51224 * 309.82051 * 13 12 11
15 15 H 1.09001 * 110.89217 * 293.44129 * 14 13 12
16 16 C 1.52858 * 113.98009 * 167.40071 * 14 13 12
17 17 C 1.54915 * 105.30305 * 215.90912 * 16 14 13
18 18 C 1.55387 * 106.41684 * 3.86055 * 17 16 14
19 19 C 1.44660 * 111.00268 * 302.99357 * 10 9 7
20 20 H 1.08999 * 109.56265 * 79.72409 * 19 10 9
21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3
22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2
23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2
24 24 H 1.08995 * 108.95872 * 287.65127 * 11 10 9
25 25 H 1.09000 * 108.95977 * 46.40458 * 11 10 9
26 26 H 1.09004 * 109.39313 * 178.21438 * 12 11 10
27 27 H 1.08998 * 109.40302 * 297.95431 * 12 11 10
28 28 H 1.08996 * 110.28053 * 334.86120 * 16 14 13
29 29 H 1.08996 * 110.28228 * 96.95319 * 16 14 13
30 30 H 1.08996 * 110.06958 * 123.10096 * 17 16 14
31 31 H 1.09002 * 110.06448 * 244.56709 * 17 16 14
32 32 H 1.08997 * 110.73964 * 142.14177 * 18 17 16
33 33 H 1.09003 * 110.74061 * 265.29063 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8905 2.3963 -1.2126
6 1 1.8905 2.3964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2509 -2.4992 0.0005
10 7 2.2055 -3.6157 0.0005
11 6 2.9731 -3.6541 1.2576
12 6 3.7353 -4.9684 1.4253
13 16 4.8667 -5.2142 0.0157
14 6 3.7350 -4.9311 -1.3695
15 1 2.9769 -5.7127 -1.4180
16 6 4.4340 -4.7636 -2.7185
17 6 3.5991 -3.7063 -3.4832
18 6 2.4950 -3.2247 -2.5015
19 6 3.1014 -3.5319 -1.1322
20 1 3.8877 -2.8067 -0.9227
21 1 -0.4850 0.8401 0.0004
22 1 0.6239 -2.5567 0.8903
23 1 0.6246 -2.5571 -0.8897
24 1 3.6848 -2.8287 1.2633
25 1 2.2864 -3.5351 2.0957
26 1 4.3110 -4.9375 2.3504
27 1 3.0264 -5.7952 1.4690
28 1 5.4538 -4.4071 -2.5739
29 1 4.4368 -5.7082 -3.2624
30 1 4.2325 -2.8683 -3.7739
31 1 3.1452 -4.1556 -4.3665
32 1 2.3181 -2.1551 -2.6143
33 1 1.5725 -3.7852 -2.6529
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306711918.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:59:52
Heat of formation + Delta-G solvation = -6.876842 kcal
Electronic energy + Delta-G solvation = -14562.955320 eV
Core-core repulsion = 12328.007688 eV
Total energy + Delta-G solvation = -2234.947632 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 227.104 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-38.78634 -35.36177 -32.72031 -30.40619 -28.28978 -27.51794 -25.61545 -22.72485
-21.36998 -20.19410 -19.12183 -16.73768 -16.14449 -15.38019 -14.87782 -14.44008
-14.03301 -13.64373 -13.27934 -13.06516 -12.44227 -12.29218 -11.95596 -11.32054
-11.16092 -10.90558 -10.85175 -10.73509 -10.58213 -10.34071 -10.17456 -10.12091
-9.92389 -9.72643 -9.10231 -8.48958 -7.41330 -7.22912 -6.08650 -4.17588
2.20358 2.89911 3.22831 3.31720 3.35601 4.36334 4.70780 4.91695
5.12471 5.22828 5.28732 5.48077 5.57735 5.76803 5.79087 5.81468
5.90156 6.00393 6.13059 6.26271 6.33519 6.36097 6.54140 6.61466
6.79922 6.88758 7.18186 7.46561 7.84025 7.93960 8.16310 8.24008
8.92189 9.49818 10.96658
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.029713 B = 0.009736 C = 0.008613
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 942.136596 B = 2875.133928 C = 3250.062283
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.889 5.889
2 C 0.067 3.933
3 Si 0.886 3.114
4 H -0.273 1.273
5 H -0.283 1.283
6 H -0.283 1.283
7 C -0.548 4.548
8 H 0.057 0.943
9 C 0.189 3.811
10 N -0.536 5.536
11 C 0.060 3.940
12 C -0.066 4.066
13 S -0.295 6.295
14 C -0.053 4.053
15 H 0.094 0.906
16 C -0.100 4.100
17 C -0.119 4.119
18 C -0.106 4.106
19 C 0.102 3.898
20 H 0.054 0.946
21 H 0.262 0.738
22 H 0.029 0.971
23 H 0.037 0.963
24 H 0.048 0.952
25 H 0.077 0.923
26 H 0.097 0.903
27 H 0.082 0.918
28 H 0.069 0.931
29 H 0.066 0.934
30 H 0.064 0.936
31 H 0.062 0.938
32 H 0.082 0.918
33 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.286 -8.035 -2.618 10.532
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.528 5.528
2 C -0.136 4.136
3 Si 0.714 3.286
4 H -0.198 1.198
5 H -0.209 1.209
6 H -0.209 1.209
7 C -0.587 4.587
8 H 0.075 0.925
9 C 0.064 3.936
10 N -0.260 5.260
11 C -0.070 4.070
12 C -0.215 4.215
13 S -0.066 6.066
14 C -0.182 4.182
15 H 0.112 0.888
16 C -0.139 4.139
17 C -0.158 4.158
18 C -0.145 4.145
19 C -0.010 4.010
20 H 0.072 0.928
21 H 0.072 0.928
22 H 0.048 0.952
23 H 0.055 0.945
24 H 0.066 0.934
25 H 0.096 0.904
26 H 0.115 0.885
27 H 0.101 0.899
28 H 0.088 0.912
29 H 0.085 0.915
30 H 0.083 0.917
31 H 0.081 0.919
32 H 0.101 0.899
33 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 6.982 -8.649 -2.606 11.417
hybrid contribution -0.372 2.023 0.203 2.067
sum 6.610 -6.626 -2.403 9.663
Atomic orbital electron populations
1.69948 1.05988 1.26769 1.50076 1.24939 0.94729 0.99097 0.94858
0.86624 0.80250 0.84001 0.77713 1.19771 1.20902 1.20947 1.21753
0.93316 0.91904 1.51725 0.92491 1.19774 0.90486 0.85132 0.98173
1.62056 1.16685 1.47034 1.00196 1.22052 0.96813 0.93964 0.94139
1.23482 0.99211 1.01912 0.96887 1.86481 1.22249 1.93781 1.04110
1.24057 0.97912 1.02223 0.94021 0.88786 1.21853 0.99206 0.99413
0.93443 1.22493 0.97419 0.97903 0.98003 1.22066 0.97210 1.02496
0.92721 1.21923 0.94949 0.91973 0.92122 0.92794 0.92831 0.95239
0.94495 0.93416 0.90434 0.88453 0.89944 0.91229 0.91534 0.91743
0.91883 0.89904 0.91486
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16
2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16
3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16
4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16
5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
7 C -0.55 -14.51 7.44 -34.44 -0.26 -14.76 16
8 H 0.06 1.53 5.97 -52.49 -0.31 1.22 16
9 C 0.19 4.69 4.74 -4.97 -0.02 4.66 16
10 N -0.54 -11.21 4.75 -228.05 -1.08 -12.30 16
11 C 0.06 1.15 4.86 -3.66 -0.02 1.13 16
12 C -0.07 -1.06 6.65 37.08 0.25 -0.81 16
13 S -0.29 -4.92 21.88 -107.50 -2.35 -7.27 16
14 C -0.05 -0.88 3.17 -25.52 -0.08 -0.96 16
15 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16
16 C -0.10 -1.43 6.47 -25.79 -0.17 -1.60 16
17 C -0.12 -1.71 6.87 -24.45 -0.17 -1.88 16
18 C -0.11 -1.91 5.20 -25.53 -0.13 -2.04 16
19 C 0.10 1.96 1.11 -67.70 -0.08 1.89 16
20 H 0.05 1.18 6.58 -51.93 -0.34 0.84 16
21 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16
22 H 0.03 0.79 7.97 -51.93 -0.41 0.37 16
23 H 0.04 0.98 7.35 -51.93 -0.38 0.59 16
24 H 0.05 1.00 6.90 -51.93 -0.36 0.64 16
25 H 0.08 1.47 7.90 -51.93 -0.41 1.06 16
26 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16
27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16
28 H 0.07 1.00 7.97 -51.93 -0.41 0.59 16
29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16
31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
32 H 0.08 1.68 7.79 -51.93 -0.40 1.28 16
33 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16
LS Contribution 266.46 15.07 4.02 4.02
Total: -1.00 -27.59 266.46 -9.61 -37.20
By element:
Atomic # 1 Polarization: 4.81 SS G_CDS: -5.13 Total: -0.32 kcal
Atomic # 6 Polarization: -11.88 SS G_CDS: -0.77 Total: -12.65 kcal
Atomic # 7 Polarization: -36.66 SS G_CDS: -0.35 Total: -37.01 kcal
Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal
Atomic # 16 Polarization: -4.92 SS G_CDS: -2.35 Total: -7.27 kcal
Total LS contribution 4.02 Total: 4.02 kcal
Total: -27.59 -9.61 -37.20 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306711918.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.321 kcal
(2) G-P(sol) polarization free energy of solvation -27.591 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.731 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.877 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds