Wall clock time and date at job start Mon Mar 30 2020 02:59:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86797 * 120.00353 * 2 1
4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1
5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1
6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1
7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1
10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2
11 11 C 1.47340 * 110.99822 * 66.04663 * 10 9 7
12 12 C 1.52854 * 112.07310 * 166.98052 * 11 10 9
13 13 S 1.82409 * 109.89847 * 58.08973 * 12 11 10
14 14 C 1.81095 * 100.51224 * 309.82051 * 13 12 11
15 15 H 1.09001 * 110.89217 * 293.44129 * 14 13 12
16 16 C 1.52858 * 113.98009 * 167.40071 * 14 13 12
17 17 C 1.54915 * 105.30305 * 215.90912 * 16 14 13
18 18 C 1.55387 * 106.41684 * 3.86055 * 17 16 14
19 19 C 1.44660 * 111.00268 * 302.99357 * 10 9 7
20 20 H 1.08999 * 109.56265 * 79.72409 * 19 10 9
21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3
22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2
23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2
24 24 H 1.08995 * 108.95872 * 287.65127 * 11 10 9
25 25 H 1.09000 * 108.95977 * 46.40458 * 11 10 9
26 26 H 1.09004 * 109.39313 * 178.21438 * 12 11 10
27 27 H 1.08998 * 109.40302 * 297.95431 * 12 11 10
28 28 H 1.08996 * 110.28053 * 334.86120 * 16 14 13
29 29 H 1.08996 * 110.28228 * 96.95319 * 16 14 13
30 30 H 1.08996 * 110.06958 * 123.10096 * 17 16 14
31 31 H 1.09002 * 110.06448 * 244.56709 * 17 16 14
32 32 H 1.08997 * 110.73964 * 142.14177 * 18 17 16
33 33 H 1.09003 * 110.74061 * 265.29063 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8905 2.3963 -1.2126
6 1 1.8905 2.3964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2509 -2.4992 0.0005
10 7 2.2055 -3.6157 0.0005
11 6 2.9731 -3.6541 1.2576
12 6 3.7353 -4.9684 1.4253
13 16 4.8667 -5.2142 0.0157
14 6 3.7350 -4.9311 -1.3695
15 1 2.9769 -5.7127 -1.4180
16 6 4.4340 -4.7636 -2.7185
17 6 3.5991 -3.7063 -3.4832
18 6 2.4950 -3.2247 -2.5015
19 6 3.1014 -3.5319 -1.1322
20 1 3.8877 -2.8067 -0.9227
21 1 -0.4850 0.8401 0.0004
22 1 0.6239 -2.5567 0.8903
23 1 0.6246 -2.5571 -0.8897
24 1 3.6848 -2.8287 1.2633
25 1 2.2864 -3.5351 2.0957
26 1 4.3110 -4.9375 2.3504
27 1 3.0264 -5.7952 1.4690
28 1 5.4538 -4.4071 -2.5739
29 1 4.4368 -5.7082 -3.2624
30 1 4.2325 -2.8683 -3.7739
31 1 3.1452 -4.1556 -4.3665
32 1 2.3181 -2.1551 -2.6143
33 1 1.5725 -3.7852 -2.6529
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000306711918.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:59:52
Heat of formation + Delta-G solvation = -23.320094 kcal
Electronic energy + Delta-G solvation = -14563.668353 eV
Core-core repulsion = 12328.007688 eV
Total energy + Delta-G solvation = -2235.660665 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 227.104 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.32513 -36.88666 -34.74075 -32.02184 -29.66135 -29.11267 -27.40785 -24.56957
-22.90991 -21.49143 -20.74382 -18.59068 -17.68291 -17.01604 -16.67853 -15.82610
-15.74477 -15.14918 -14.75686 -14.36470 -14.26977 -13.84320 -13.52682 -13.08621
-12.88318 -12.76798 -12.47197 -12.07602 -12.05322 -11.95636 -11.93038 -11.74032
-11.52822 -11.32441 -10.62513 -10.53960 -9.18479 -8.61917 -8.18119 -6.35912
0.88234 1.32998 1.35807 1.46374 1.55777 2.35155 3.07953 3.14046
3.54302 3.81059 3.95631 4.12561 4.24236 4.38197 4.46619 4.49364
4.56342 4.69549 4.74927 4.80927 5.00392 5.04240 5.11522 5.16058
5.27420 5.30573 5.35971 5.45131 5.72720 6.00166 6.19488 6.45253
6.82894 7.35298 8.85113
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.029713 B = 0.009736 C = 0.008613
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 942.136596 B = 2875.133928 C = 3250.062283
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.923 5.923
2 C 0.017 3.983
3 Si 0.950 3.050
4 H -0.271 1.271
5 H -0.277 1.277
6 H -0.278 1.278
7 C -0.548 4.548
8 H 0.050 0.950
9 C 0.205 3.795
10 N -0.536 5.536
11 C 0.061 3.939
12 C -0.058 4.058
13 S -0.295 6.295
14 C -0.046 4.046
15 H 0.096 0.904
16 C -0.094 4.094
17 C -0.108 4.108
18 C -0.108 4.108
19 C 0.097 3.903
20 H 0.027 0.973
21 H 0.265 0.735
22 H 0.004 0.996
23 H 0.015 0.985
24 H 0.026 0.974
25 H 0.074 0.926
26 H 0.123 0.877
27 H 0.094 0.906
28 H 0.070 0.930
29 H 0.095 0.905
30 H 0.069 0.931
31 H 0.089 0.911
32 H 0.051 0.949
33 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.735 -8.890 -3.195 12.209
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.562 5.562
2 C -0.182 4.182
3 Si 0.776 3.224
4 H -0.195 1.195
5 H -0.203 1.203
6 H -0.204 1.204
7 C -0.587 4.587
8 H 0.068 0.932
9 C 0.079 3.921
10 N -0.259 5.259
11 C -0.068 4.068
12 C -0.206 4.206
13 S -0.066 6.066
14 C -0.175 4.175
15 H 0.115 0.885
16 C -0.133 4.133
17 C -0.148 4.148
18 C -0.147 4.147
19 C -0.014 4.014
20 H 0.044 0.956
21 H 0.074 0.926
22 H 0.022 0.978
23 H 0.033 0.967
24 H 0.044 0.956
25 H 0.092 0.908
26 H 0.141 0.859
27 H 0.113 0.887
28 H 0.089 0.911
29 H 0.113 0.887
30 H 0.087 0.913
31 H 0.108 0.892
32 H 0.070 0.930
33 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 8.449 -9.518 -3.184 13.120
hybrid contribution -0.840 2.267 0.410 2.452
sum 7.609 -7.252 -2.774 10.871
Atomic orbital electron populations
1.70051 1.07362 1.27734 1.51081 1.25701 0.95506 1.02438 0.94604
0.85625 0.78935 0.79963 0.77905 1.19514 1.20260 1.20415 1.21883
0.92960 0.92814 1.51088 0.93205 1.19402 0.90787 0.86153 0.95755
1.62036 1.17150 1.44870 1.01794 1.22069 0.96242 0.95382 0.93131
1.23452 0.99307 0.99998 0.97892 1.86500 1.22375 1.93509 1.04220
1.24031 0.98109 0.99899 0.95446 0.88543 1.21883 0.98695 1.00656
0.92037 1.22449 0.96175 0.98321 0.97819 1.22036 0.98620 1.00603
0.93427 1.21968 0.93935 0.93549 0.91961 0.95552 0.92608 0.97775
0.96688 0.95611 0.90798 0.85889 0.88731 0.91126 0.88682 0.91261
0.89220 0.93048 0.91787
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -53.87 13.29 21.45 0.28 -53.59 16
2 C 0.02 0.96 5.46 84.66 0.46 1.42 16
3 Si 0.95 43.66 29.54 68.60 2.03 45.68 16
4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16
5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16
6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
7 C -0.55 -29.83 7.44 25.60 0.19 -29.64 16
8 H 0.05 2.75 5.97 -2.91 -0.02 2.73 16
9 C 0.21 10.55 4.74 85.56 0.41 10.95 16
10 N -0.54 -22.73 4.75 -875.43 -4.16 -26.89 16
11 C 0.06 2.35 4.86 86.17 0.42 2.77 16
12 C -0.06 -1.75 6.65 71.93 0.48 -1.27 16
13 S -0.29 -9.22 21.88 -56.49 -1.24 -10.45 16
14 C -0.05 -1.43 3.17 31.38 0.10 -1.33 16
15 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16
16 C -0.09 -2.40 6.47 31.20 0.20 -2.20 16
17 C -0.11 -2.89 6.87 32.07 0.22 -2.67 16
18 C -0.11 -3.89 5.20 31.37 0.16 -3.73 16
19 C 0.10 3.75 1.11 46.12 0.05 3.80 16
20 H 0.03 1.17 6.58 -2.39 -0.02 1.16 16
21 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16
22 H 0.00 0.23 7.97 -2.39 -0.02 0.21 16
23 H 0.02 0.83 7.35 -2.39 -0.02 0.81 16
24 H 0.03 1.09 6.90 -2.39 -0.02 1.07 16
25 H 0.07 2.84 7.90 -2.39 -0.02 2.82 16
26 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16
27 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16
28 H 0.07 1.83 7.97 -2.39 -0.02 1.81 16
29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16
30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16
32 H 0.05 2.15 7.79 -2.39 -0.02 2.13 16
33 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16
Total: -1.00 -59.64 266.46 0.68 -58.97
By element:
Atomic # 1 Polarization: 7.11 SS G_CDS: 1.07 Total: 8.18 kcal
Atomic # 6 Polarization: -24.59 SS G_CDS: 2.69 Total: -21.89 kcal
Atomic # 7 Polarization: -76.61 SS G_CDS: -3.88 Total: -80.48 kcal
Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal
Atomic # 16 Polarization: -9.22 SS G_CDS: -1.24 Total: -10.45 kcal
Total: -59.64 0.68 -58.97 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306711918.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.647 kcal
(2) G-P(sol) polarization free energy of solvation -59.644 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.998 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.967 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.320 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds