Wall clock time and date at job start Mon Mar 30 2020 02:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.47340 * 110.99822 * 66.04663 * 10 9 7 12 12 C 1.52854 * 112.07310 * 166.98052 * 11 10 9 13 13 S 1.82409 * 109.89847 * 58.08973 * 12 11 10 14 14 C 1.81095 * 100.51224 * 309.82051 * 13 12 11 15 15 H 1.09001 * 110.89217 * 293.44129 * 14 13 12 16 16 C 1.52858 * 113.98009 * 167.40071 * 14 13 12 17 17 C 1.54915 * 105.30305 * 215.90912 * 16 14 13 18 18 C 1.55387 * 106.41684 * 3.86055 * 17 16 14 19 19 C 1.44660 * 111.00268 * 302.99357 * 10 9 7 20 20 H 1.08999 * 109.56265 * 79.72409 * 19 10 9 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.08995 * 108.95872 * 287.65127 * 11 10 9 25 25 H 1.09000 * 108.95977 * 46.40458 * 11 10 9 26 26 H 1.09004 * 109.39313 * 178.21438 * 12 11 10 27 27 H 1.08998 * 109.40302 * 297.95431 * 12 11 10 28 28 H 1.08996 * 110.28053 * 334.86120 * 16 14 13 29 29 H 1.08996 * 110.28228 * 96.95319 * 16 14 13 30 30 H 1.08996 * 110.06958 * 123.10096 * 17 16 14 31 31 H 1.09002 * 110.06448 * 244.56709 * 17 16 14 32 32 H 1.08997 * 110.73964 * 142.14177 * 18 17 16 33 33 H 1.09003 * 110.74061 * 265.29063 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 2.9731 -3.6541 1.2576 12 6 3.7353 -4.9684 1.4253 13 16 4.8667 -5.2142 0.0157 14 6 3.7350 -4.9311 -1.3695 15 1 2.9769 -5.7127 -1.4180 16 6 4.4340 -4.7636 -2.7185 17 6 3.5991 -3.7063 -3.4832 18 6 2.4950 -3.2247 -2.5015 19 6 3.1014 -3.5319 -1.1322 20 1 3.8877 -2.8067 -0.9227 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 3.6848 -2.8287 1.2633 25 1 2.2864 -3.5351 2.0957 26 1 4.3110 -4.9375 2.3504 27 1 3.0264 -5.7952 1.4690 28 1 5.4538 -4.4071 -2.5739 29 1 4.4368 -5.7082 -3.2624 30 1 4.2325 -2.8683 -3.7739 31 1 3.1452 -4.1556 -4.3665 32 1 2.3181 -2.1551 -2.6143 33 1 1.5725 -3.7852 -2.6529 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306711918.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:52 Heat of formation + Delta-G solvation = -23.320094 kcal Electronic energy + Delta-G solvation = -14563.668353 eV Core-core repulsion = 12328.007688 eV Total energy + Delta-G solvation = -2235.660665 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.32513 -36.88666 -34.74075 -32.02184 -29.66135 -29.11267 -27.40785 -24.56957 -22.90991 -21.49143 -20.74382 -18.59068 -17.68291 -17.01604 -16.67853 -15.82610 -15.74477 -15.14918 -14.75686 -14.36470 -14.26977 -13.84320 -13.52682 -13.08621 -12.88318 -12.76798 -12.47197 -12.07602 -12.05322 -11.95636 -11.93038 -11.74032 -11.52822 -11.32441 -10.62513 -10.53960 -9.18479 -8.61917 -8.18119 -6.35912 0.88234 1.32998 1.35807 1.46374 1.55777 2.35155 3.07953 3.14046 3.54302 3.81059 3.95631 4.12561 4.24236 4.38197 4.46619 4.49364 4.56342 4.69549 4.74927 4.80927 5.00392 5.04240 5.11522 5.16058 5.27420 5.30573 5.35971 5.45131 5.72720 6.00166 6.19488 6.45253 6.82894 7.35298 8.85113 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.029713 B = 0.009736 C = 0.008613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.136596 B = 2875.133928 C = 3250.062283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.205 3.795 10 N -0.536 5.536 11 C 0.061 3.939 12 C -0.058 4.058 13 S -0.295 6.295 14 C -0.046 4.046 15 H 0.096 0.904 16 C -0.094 4.094 17 C -0.108 4.108 18 C -0.108 4.108 19 C 0.097 3.903 20 H 0.027 0.973 21 H 0.265 0.735 22 H 0.004 0.996 23 H 0.015 0.985 24 H 0.026 0.974 25 H 0.074 0.926 26 H 0.123 0.877 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.735 -8.890 -3.195 12.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.587 4.587 8 H 0.068 0.932 9 C 0.079 3.921 10 N -0.259 5.259 11 C -0.068 4.068 12 C -0.206 4.206 13 S -0.066 6.066 14 C -0.175 4.175 15 H 0.115 0.885 16 C -0.133 4.133 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.014 4.014 20 H 0.044 0.956 21 H 0.074 0.926 22 H 0.022 0.978 23 H 0.033 0.967 24 H 0.044 0.956 25 H 0.092 0.908 26 H 0.141 0.859 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.449 -9.518 -3.184 13.120 hybrid contribution -0.840 2.267 0.410 2.452 sum 7.609 -7.252 -2.774 10.871 Atomic orbital electron populations 1.70051 1.07362 1.27734 1.51081 1.25701 0.95506 1.02438 0.94604 0.85625 0.78935 0.79963 0.77905 1.19514 1.20260 1.20415 1.21883 0.92960 0.92814 1.51088 0.93205 1.19402 0.90787 0.86153 0.95755 1.62036 1.17150 1.44870 1.01794 1.22069 0.96242 0.95382 0.93131 1.23452 0.99307 0.99998 0.97892 1.86500 1.22375 1.93509 1.04220 1.24031 0.98109 0.99899 0.95446 0.88543 1.21883 0.98695 1.00656 0.92037 1.22449 0.96175 0.98321 0.97819 1.22036 0.98620 1.00603 0.93427 1.21968 0.93935 0.93549 0.91961 0.95552 0.92608 0.97775 0.96688 0.95611 0.90798 0.85889 0.88731 0.91126 0.88682 0.91261 0.89220 0.93048 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.87 13.29 21.45 0.28 -53.59 16 2 C 0.02 0.96 5.46 84.66 0.46 1.42 16 3 Si 0.95 43.66 29.54 68.60 2.03 45.68 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.55 -29.83 7.44 25.60 0.19 -29.64 16 8 H 0.05 2.75 5.97 -2.91 -0.02 2.73 16 9 C 0.21 10.55 4.74 85.56 0.41 10.95 16 10 N -0.54 -22.73 4.75 -875.43 -4.16 -26.89 16 11 C 0.06 2.35 4.86 86.17 0.42 2.77 16 12 C -0.06 -1.75 6.65 71.93 0.48 -1.27 16 13 S -0.29 -9.22 21.88 -56.49 -1.24 -10.45 16 14 C -0.05 -1.43 3.17 31.38 0.10 -1.33 16 15 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 16 C -0.09 -2.40 6.47 31.20 0.20 -2.20 16 17 C -0.11 -2.89 6.87 32.07 0.22 -2.67 16 18 C -0.11 -3.89 5.20 31.37 0.16 -3.73 16 19 C 0.10 3.75 1.11 46.12 0.05 3.80 16 20 H 0.03 1.17 6.58 -2.39 -0.02 1.16 16 21 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 22 H 0.00 0.23 7.97 -2.39 -0.02 0.21 16 23 H 0.02 0.83 7.35 -2.39 -0.02 0.81 16 24 H 0.03 1.09 6.90 -2.39 -0.02 1.07 16 25 H 0.07 2.84 7.90 -2.39 -0.02 2.82 16 26 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.07 1.83 7.97 -2.39 -0.02 1.81 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.05 2.15 7.79 -2.39 -0.02 2.13 16 33 H 0.06 2.32 8.12 -2.39 -0.02 2.30 16 Total: -1.00 -59.64 266.46 0.68 -58.97 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 1.07 Total: 8.18 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 2.69 Total: -21.89 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -3.88 Total: -80.48 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.24 Total: -10.45 kcal Total: -59.64 0.68 -58.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306711918.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.647 kcal (2) G-P(sol) polarization free energy of solvation -59.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds