Wall clock time and date at job start Mon Mar 30 2020 03:46:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.47962 * 111.00037 * 2 1
4 4 C 1.53935 * 86.30001 * 222.47236 * 3 2 1
5 5 N 1.46503 * 113.73471 * 138.02919 * 4 3 2
6 6 C 1.34771 * 120.00270 * 154.99776 * 5 4 3
7 7 O 1.21432 * 120.00142 * 359.97438 * 6 5 4
8 8 C 1.48837 * 119.99874 * 179.97438 * 6 5 4
9 9 O 1.21499 * 119.99956 * 359.97438 * 8 6 5
10 10 N 1.34771 * 119.99874 * 179.97438 * 8 6 5
11 11 C 1.36124 * 120.00046 * 179.97438 * 10 8 6
12 12 H 1.08004 * 119.99831 * 0.02562 * 11 10 8
13 13 C 1.39581 * 119.99793 * 179.97438 * 11 10 8
14 14 N 1.31011 * 120.00719 * 0.02562 * 13 11 10
15 15 Si 1.86811 * 119.99636 * 180.02562 * 13 11 10
16 16 H 1.48505 * 109.46839 * 0.02562 * 15 13 11
17 17 H 1.48503 * 109.46905 * 120.00045 * 15 13 11
18 18 H 1.48498 * 109.47299 * 240.00263 * 15 13 11
19 19 C 1.48187 * 111.07743 * 260.70938 * 2 1 3
20 20 H 1.08997 * 109.47192 * 60.00266 * 1 2 3
21 21 H 1.09005 * 109.47086 * 179.97438 * 1 2 3
22 22 H 1.08992 * 109.47437 * 300.00082 * 1 2 3
23 23 H 1.09002 * 113.76087 * 108.09701 * 3 2 1
24 24 H 1.09005 * 113.75858 * 336.84163 * 3 2 1
25 25 H 1.09005 * 113.73320 * 269.19614 * 4 3 2
26 26 H 0.97008 * 119.99634 * 334.99105 * 5 4 3
27 27 H 0.96995 * 120.00271 * 359.97438 * 10 8 6
28 28 H 0.96995 * 120.00406 * 179.97438 * 14 13 11
29 29 H 1.09005 * 113.65869 * 23.13541 * 19 2 1
30 30 H 1.09002 * 113.92722 * 251.82174 * 19 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9992 1.3813 0.0000
4 6 3.0214 0.8825 -1.0373
5 7 3.2485 1.8204 -2.1396
6 6 4.4120 1.7926 -2.8192
7 8 5.2724 0.9905 -2.5175
8 6 4.6424 2.7451 -3.9394
9 8 3.7814 3.5474 -4.2415
10 7 5.8061 2.7177 -4.6186
11 6 6.0167 3.5885 -5.6435
12 1 5.2513 4.3016 -5.9121
13 6 7.2221 3.5604 -6.3466
14 7 8.1508 2.6957 -6.0206
15 14 7.5113 4.7559 -7.7527
16 1 6.3171 5.6228 -7.9188
17 1 8.6960 5.5986 -7.4501
18 1 7.7509 3.9969 -9.0064
19 6 2.0019 -0.2232 -1.3646
20 1 -0.3633 0.5138 -0.8900
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3634 0.5138 0.8899
23 1 2.4459 1.6803 0.9483
24 1 1.3003 2.1201 -0.3924
25 1 3.9474 0.5117 -0.5975
26 1 2.5613 2.4614 -2.3804
27 1 6.4937 2.0775 -4.3772
28 1 8.9883 2.6760 -6.5095
29 1 1.3025 0.0447 -2.1566
30 1 2.4509 -1.2060 -1.5085
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000307621085.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:56
Heat of formation + Delta-G solvation = -35.099151 kcal
Electronic energy + Delta-G solvation = -15348.274908 eV
Core-core repulsion = 12565.810250 eV
Total energy + Delta-G solvation = -2782.464658 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.106 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-40.34805 -38.96786 -37.07485 -34.49712 -33.48113 -31.42567 -29.71472 -26.25387
-26.03567 -24.25274 -22.27789 -20.18148 -19.44925 -18.34455 -17.05082 -16.47718
-15.69092 -15.41980 -15.13717 -14.64184 -14.44491 -13.91309 -13.36802 -13.03178
-12.85222 -12.65671 -12.60879 -11.83220 -11.79458 -11.25047 -11.17261 -10.84121
-10.55003 -10.42917 -10.38790 -9.75798 -9.14211 -8.79613 -8.29395 -8.25381
-6.69782 -4.02070 2.38379 3.12034 3.13910 3.20034 3.31195 3.83162
4.04994 4.18182 4.53652 4.76558 4.91518 4.98768 5.09268 5.17172
5.28206 5.30013 5.53978 5.65252 5.71455 5.93033 6.07465 6.09205
6.71294 6.80068 7.28551 7.64504 7.83118 8.29140 8.57773 8.93216
9.28837 9.82027 10.45024
Molecular weight = 227.11amu
Principal moments of inertia in cm(-1)
A = 0.074775 B = 0.005075 C = 0.004886
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 374.366080 B = 5515.851940 C = 5729.018896
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.009 4.009
2 N -0.483 5.483
3 C -0.008 4.008
4 C 0.121 3.879
5 N -0.708 5.708
6 C 0.516 3.484
7 O -0.543 6.543
8 C 0.392 3.608
9 O -0.599 6.599
10 N -0.498 5.498
11 C -0.306 4.306
12 H 0.113 0.887
13 C 0.031 3.969
14 N -0.867 5.867
15 Si 0.939 3.061
16 H -0.263 1.263
17 H -0.277 1.277
18 H -0.277 1.277
19 C -0.014 4.014
20 H 0.036 0.964
21 H 0.071 0.929
22 H 0.068 0.932
23 H 0.097 0.903
24 H 0.076 0.924
25 H 0.125 0.875
26 H 0.410 0.590
27 H 0.405 0.595
28 H 0.281 0.719
29 H 0.076 0.924
30 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.854 -3.098 7.912 13.012
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 N -0.205 5.205
3 C -0.137 4.137
4 C 0.015 3.985
5 N -0.361 5.361
6 C 0.300 3.700
7 O -0.419 6.419
8 C 0.177 3.823
9 O -0.488 6.488
10 N -0.132 5.132
11 C -0.436 4.436
12 H 0.131 0.869
13 C -0.176 4.176
14 N -0.505 5.505
15 Si 0.764 3.236
16 H -0.187 1.187
17 H -0.202 1.202
18 H -0.203 1.203
19 C -0.144 4.144
20 H 0.055 0.945
21 H 0.089 0.911
22 H 0.087 0.913
23 H 0.115 0.885
24 H 0.094 0.906
25 H 0.142 0.858
26 H 0.246 0.754
27 H 0.240 0.760
28 H 0.091 0.909
29 H 0.094 0.906
30 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -9.431 -3.663 8.399 13.149
hybrid contribution -0.150 0.904 -1.221 1.527
sum -9.581 -2.759 7.177 12.285
Atomic orbital electron populations
1.22854 0.89303 1.02498 1.01156 1.68469 1.09278 1.18150 1.24617
1.24410 0.96976 0.91851 1.00479 1.22870 0.98902 0.89633 0.87118
1.45700 1.18724 1.37925 1.33766 1.20758 0.81602 0.84142 0.83465
1.90690 1.43827 1.39559 1.67873 1.18941 0.85850 0.89620 0.87933
1.90578 1.44715 1.42652 1.70833 1.41582 1.13912 1.30776 1.26908
1.19944 1.01855 1.13765 1.08086 0.86893 1.25597 0.94947 0.97703
0.99327 1.69486 1.06752 1.33993 1.40301 0.85666 0.78876 0.79543
0.79517 1.18700 1.20250 1.20253 1.24636 0.97499 1.01393 0.90851
0.94537 0.91063 0.91293 0.88471 0.90601 0.85761 0.75408 0.75970
0.90906 0.90614 0.88652
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.01 -0.08 9.65 60.06 0.58 0.50 16
2 N -0.48 -5.49 6.56 -245.79 -1.61 -7.11 16
3 C -0.01 -0.08 7.73 -2.77 -0.02 -0.11 16
4 C 0.12 1.68 4.43 -69.33 -0.31 1.37 16
5 N -0.71 -11.80 5.36 -55.34 -0.30 -12.09 16
6 C 0.52 11.04 7.87 -11.87 -0.09 10.94 16
7 O -0.54 -12.57 16.07 5.43 0.09 -12.48 16
8 C 0.39 9.79 7.82 -11.87 -0.09 9.69 16
9 O -0.60 -15.88 16.03 5.37 0.09 -15.79 16
10 N -0.50 -13.23 5.25 -11.59 -0.06 -13.29 16
11 C -0.31 -8.37 9.67 -15.15 -0.15 -8.52 16
12 H 0.11 3.16 7.15 -52.48 -0.38 2.78 16
13 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16
14 N -0.87 -23.10 13.03 55.53 0.72 -22.37 16
15 Si 0.94 19.89 29.56 -169.99 -5.02 14.86 16
16 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16
17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16
18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16
19 C -0.01 -0.17 7.78 -2.65 -0.02 -0.19 16
20 H 0.04 0.32 7.62 -51.93 -0.40 -0.08 16
21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
22 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
23 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16
24 H 0.08 0.75 7.90 -51.93 -0.41 0.34 16
25 H 0.12 1.90 7.46 -51.93 -0.39 1.51 16
26 H 0.41 6.40 8.19 -40.82 -0.33 6.07 16
27 H 0.40 10.84 7.35 -40.82 -0.30 10.54 16
28 H 0.28 6.89 8.30 -40.82 -0.34 6.56 16
29 H 0.08 0.89 7.62 -51.93 -0.40 0.50 16
30 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16
LS Contribution 267.79 15.07 4.04 4.04
Total: -1.00 -30.15 267.79 -5.68 -35.83
By element:
Atomic # 1 Polarization: 17.43 SS G_CDS: -3.42 Total: 14.01 kcal
Atomic # 6 Polarization: 14.60 SS G_CDS: -0.20 Total: 14.40 kcal
Atomic # 7 Polarization: -53.62 SS G_CDS: -1.25 Total: -54.87 kcal
Atomic # 8 Polarization: -28.45 SS G_CDS: 0.17 Total: -28.27 kcal
Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal
Total LS contribution 4.04 Total: 4.04 kcal
Total: -30.15 -5.68 -35.83 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307621085.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.732 kcal
(2) G-P(sol) polarization free energy of solvation -30.147 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.415 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.099 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds