Wall clock time and date at job start Mon Mar 30 2020 03:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47962 * 111.00037 * 2 1 4 4 C 1.53935 * 86.30001 * 222.47236 * 3 2 1 5 5 N 1.46503 * 113.73471 * 138.02919 * 4 3 2 6 6 C 1.34771 * 120.00270 * 154.99776 * 5 4 3 7 7 O 1.21432 * 120.00142 * 359.97438 * 6 5 4 8 8 C 1.48837 * 119.99874 * 179.97438 * 6 5 4 9 9 O 1.21499 * 119.99956 * 359.97438 * 8 6 5 10 10 N 1.34771 * 119.99874 * 179.97438 * 8 6 5 11 11 C 1.36124 * 120.00046 * 179.97438 * 10 8 6 12 12 H 1.08004 * 119.99831 * 0.02562 * 11 10 8 13 13 C 1.39581 * 119.99793 * 179.97438 * 11 10 8 14 14 N 1.31011 * 120.00719 * 0.02562 * 13 11 10 15 15 Si 1.86811 * 119.99636 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46839 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46905 * 120.00045 * 15 13 11 18 18 H 1.48498 * 109.47299 * 240.00263 * 15 13 11 19 19 C 1.48187 * 111.07743 * 260.70938 * 2 1 3 20 20 H 1.08997 * 109.47192 * 60.00266 * 1 2 3 21 21 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47437 * 300.00082 * 1 2 3 23 23 H 1.09002 * 113.76087 * 108.09701 * 3 2 1 24 24 H 1.09005 * 113.75858 * 336.84163 * 3 2 1 25 25 H 1.09005 * 113.73320 * 269.19614 * 4 3 2 26 26 H 0.97008 * 119.99634 * 334.99105 * 5 4 3 27 27 H 0.96995 * 120.00271 * 359.97438 * 10 8 6 28 28 H 0.96995 * 120.00406 * 179.97438 * 14 13 11 29 29 H 1.09005 * 113.65869 * 23.13541 * 19 2 1 30 30 H 1.09002 * 113.92722 * 251.82174 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0214 0.8825 -1.0373 5 7 3.2485 1.8204 -2.1396 6 6 4.4120 1.7926 -2.8192 7 8 5.2724 0.9905 -2.5175 8 6 4.6424 2.7451 -3.9394 9 8 3.7814 3.5474 -4.2415 10 7 5.8061 2.7177 -4.6186 11 6 6.0167 3.5885 -5.6435 12 1 5.2513 4.3016 -5.9121 13 6 7.2221 3.5604 -6.3466 14 7 8.1508 2.6957 -6.0206 15 14 7.5113 4.7559 -7.7527 16 1 6.3171 5.6228 -7.9188 17 1 8.6960 5.5986 -7.4501 18 1 7.7509 3.9969 -9.0064 19 6 2.0019 -0.2232 -1.3646 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 2.4459 1.6803 0.9483 24 1 1.3003 2.1201 -0.3924 25 1 3.9474 0.5117 -0.5975 26 1 2.5613 2.4614 -2.3804 27 1 6.4937 2.0775 -4.3772 28 1 8.9883 2.6760 -6.5095 29 1 1.3025 0.0447 -2.1566 30 1 2.4509 -1.2060 -1.5085 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307621085.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:56 Heat of formation + Delta-G solvation = -35.099151 kcal Electronic energy + Delta-G solvation = -15348.274908 eV Core-core repulsion = 12565.810250 eV Total energy + Delta-G solvation = -2782.464658 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.34805 -38.96786 -37.07485 -34.49712 -33.48113 -31.42567 -29.71472 -26.25387 -26.03567 -24.25274 -22.27789 -20.18148 -19.44925 -18.34455 -17.05082 -16.47718 -15.69092 -15.41980 -15.13717 -14.64184 -14.44491 -13.91309 -13.36802 -13.03178 -12.85222 -12.65671 -12.60879 -11.83220 -11.79458 -11.25047 -11.17261 -10.84121 -10.55003 -10.42917 -10.38790 -9.75798 -9.14211 -8.79613 -8.29395 -8.25381 -6.69782 -4.02070 2.38379 3.12034 3.13910 3.20034 3.31195 3.83162 4.04994 4.18182 4.53652 4.76558 4.91518 4.98768 5.09268 5.17172 5.28206 5.30013 5.53978 5.65252 5.71455 5.93033 6.07465 6.09205 6.71294 6.80068 7.28551 7.64504 7.83118 8.29140 8.57773 8.93216 9.28837 9.82027 10.45024 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.074775 B = 0.005075 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.366080 B = 5515.851940 C = 5729.018896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.483 5.483 3 C -0.008 4.008 4 C 0.121 3.879 5 N -0.708 5.708 6 C 0.516 3.484 7 O -0.543 6.543 8 C 0.392 3.608 9 O -0.599 6.599 10 N -0.498 5.498 11 C -0.306 4.306 12 H 0.113 0.887 13 C 0.031 3.969 14 N -0.867 5.867 15 Si 0.939 3.061 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.014 4.014 20 H 0.036 0.964 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.097 0.903 24 H 0.076 0.924 25 H 0.125 0.875 26 H 0.410 0.590 27 H 0.405 0.595 28 H 0.281 0.719 29 H 0.076 0.924 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.854 -3.098 7.912 13.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 N -0.205 5.205 3 C -0.137 4.137 4 C 0.015 3.985 5 N -0.361 5.361 6 C 0.300 3.700 7 O -0.419 6.419 8 C 0.177 3.823 9 O -0.488 6.488 10 N -0.132 5.132 11 C -0.436 4.436 12 H 0.131 0.869 13 C -0.176 4.176 14 N -0.505 5.505 15 Si 0.764 3.236 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.203 1.203 19 C -0.144 4.144 20 H 0.055 0.945 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.115 0.885 24 H 0.094 0.906 25 H 0.142 0.858 26 H 0.246 0.754 27 H 0.240 0.760 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.431 -3.663 8.399 13.149 hybrid contribution -0.150 0.904 -1.221 1.527 sum -9.581 -2.759 7.177 12.285 Atomic orbital electron populations 1.22854 0.89303 1.02498 1.01156 1.68469 1.09278 1.18150 1.24617 1.24410 0.96976 0.91851 1.00479 1.22870 0.98902 0.89633 0.87118 1.45700 1.18724 1.37925 1.33766 1.20758 0.81602 0.84142 0.83465 1.90690 1.43827 1.39559 1.67873 1.18941 0.85850 0.89620 0.87933 1.90578 1.44715 1.42652 1.70833 1.41582 1.13912 1.30776 1.26908 1.19944 1.01855 1.13765 1.08086 0.86893 1.25597 0.94947 0.97703 0.99327 1.69486 1.06752 1.33993 1.40301 0.85666 0.78876 0.79543 0.79517 1.18700 1.20250 1.20253 1.24636 0.97499 1.01393 0.90851 0.94537 0.91063 0.91293 0.88471 0.90601 0.85761 0.75408 0.75970 0.90906 0.90614 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.65 60.06 0.58 0.50 16 2 N -0.48 -5.49 6.56 -245.79 -1.61 -7.11 16 3 C -0.01 -0.08 7.73 -2.77 -0.02 -0.11 16 4 C 0.12 1.68 4.43 -69.33 -0.31 1.37 16 5 N -0.71 -11.80 5.36 -55.34 -0.30 -12.09 16 6 C 0.52 11.04 7.87 -11.87 -0.09 10.94 16 7 O -0.54 -12.57 16.07 5.43 0.09 -12.48 16 8 C 0.39 9.79 7.82 -11.87 -0.09 9.69 16 9 O -0.60 -15.88 16.03 5.37 0.09 -15.79 16 10 N -0.50 -13.23 5.25 -11.59 -0.06 -13.29 16 11 C -0.31 -8.37 9.67 -15.15 -0.15 -8.52 16 12 H 0.11 3.16 7.15 -52.48 -0.38 2.78 16 13 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 14 N -0.87 -23.10 13.03 55.53 0.72 -22.37 16 15 Si 0.94 19.89 29.56 -169.99 -5.02 14.86 16 16 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 19 C -0.01 -0.17 7.78 -2.65 -0.02 -0.19 16 20 H 0.04 0.32 7.62 -51.93 -0.40 -0.08 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.08 0.75 7.90 -51.93 -0.41 0.34 16 25 H 0.12 1.90 7.46 -51.93 -0.39 1.51 16 26 H 0.41 6.40 8.19 -40.82 -0.33 6.07 16 27 H 0.40 10.84 7.35 -40.82 -0.30 10.54 16 28 H 0.28 6.89 8.30 -40.82 -0.34 6.56 16 29 H 0.08 0.89 7.62 -51.93 -0.40 0.50 16 30 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 267.79 15.07 4.04 4.04 Total: -1.00 -30.15 267.79 -5.68 -35.83 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -3.42 Total: 14.01 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: -0.20 Total: 14.40 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -1.25 Total: -54.87 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: 0.17 Total: -28.27 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.15 -5.68 -35.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307621085.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.732 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds