Wall clock time and date at job start Mon Mar 30 2020 03:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47962 * 111.00037 * 2 1 4 4 C 1.53935 * 86.30001 * 222.47236 * 3 2 1 5 5 N 1.46503 * 113.73471 * 138.02919 * 4 3 2 6 6 C 1.34771 * 120.00270 * 154.99776 * 5 4 3 7 7 O 1.21432 * 120.00142 * 359.97438 * 6 5 4 8 8 C 1.48837 * 119.99874 * 179.97438 * 6 5 4 9 9 O 1.21499 * 119.99956 * 359.97438 * 8 6 5 10 10 N 1.34771 * 119.99874 * 179.97438 * 8 6 5 11 11 C 1.36124 * 120.00046 * 179.97438 * 10 8 6 12 12 H 1.08004 * 119.99831 * 0.02562 * 11 10 8 13 13 C 1.39581 * 119.99793 * 179.97438 * 11 10 8 14 14 N 1.31011 * 120.00719 * 0.02562 * 13 11 10 15 15 Si 1.86811 * 119.99636 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.46839 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46905 * 120.00045 * 15 13 11 18 18 H 1.48498 * 109.47299 * 240.00263 * 15 13 11 19 19 C 1.48187 * 111.07743 * 260.70938 * 2 1 3 20 20 H 1.08997 * 109.47192 * 60.00266 * 1 2 3 21 21 H 1.09005 * 109.47086 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47437 * 300.00082 * 1 2 3 23 23 H 1.09002 * 113.76087 * 108.09701 * 3 2 1 24 24 H 1.09005 * 113.75858 * 336.84163 * 3 2 1 25 25 H 1.09005 * 113.73320 * 269.19614 * 4 3 2 26 26 H 0.97008 * 119.99634 * 334.99105 * 5 4 3 27 27 H 0.96995 * 120.00271 * 359.97438 * 10 8 6 28 28 H 0.96995 * 120.00406 * 179.97438 * 14 13 11 29 29 H 1.09005 * 113.65869 * 23.13541 * 19 2 1 30 30 H 1.09002 * 113.92722 * 251.82174 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0214 0.8825 -1.0373 5 7 3.2485 1.8204 -2.1396 6 6 4.4120 1.7926 -2.8192 7 8 5.2724 0.9905 -2.5175 8 6 4.6424 2.7451 -3.9394 9 8 3.7814 3.5474 -4.2415 10 7 5.8061 2.7177 -4.6186 11 6 6.0167 3.5885 -5.6435 12 1 5.2513 4.3016 -5.9121 13 6 7.2221 3.5604 -6.3466 14 7 8.1508 2.6957 -6.0206 15 14 7.5113 4.7559 -7.7527 16 1 6.3171 5.6228 -7.9188 17 1 8.6960 5.5986 -7.4501 18 1 7.7509 3.9969 -9.0064 19 6 2.0019 -0.2232 -1.3646 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 2.4459 1.6803 0.9483 24 1 1.3003 2.1201 -0.3924 25 1 3.9474 0.5117 -0.5975 26 1 2.5613 2.4614 -2.3804 27 1 6.4937 2.0775 -4.3772 28 1 8.9883 2.6760 -6.5095 29 1 1.3025 0.0447 -2.1566 30 1 2.4509 -1.2060 -1.5085 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307621085.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:56 Heat of formation + Delta-G solvation = -61.341113 kcal Electronic energy + Delta-G solvation = -15349.412845 eV Core-core repulsion = 12565.810250 eV Total energy + Delta-G solvation = -2783.602595 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.66070 -40.51498 -38.92322 -36.42985 -35.00966 -33.43890 -30.73499 -27.93428 -27.18578 -25.68208 -23.68754 -21.45003 -21.03404 -20.32995 -18.71970 -17.95285 -17.14541 -16.77435 -16.55764 -16.34037 -15.76868 -15.65706 -14.93502 -14.57853 -14.14363 -13.82465 -13.72300 -13.63283 -12.98536 -12.80905 -12.57431 -12.31656 -12.12648 -12.07893 -11.81235 -11.67930 -10.33763 -10.28348 -10.20759 -9.89867 -8.66437 -6.11459 0.57282 1.41785 1.46162 1.57446 1.77545 2.28734 2.34946 2.86084 3.14149 3.27690 3.48005 3.82208 3.99047 4.08494 4.15710 4.43512 4.52588 4.63544 4.76912 4.90323 5.00476 5.24304 5.25226 5.32398 5.67691 5.93271 6.14521 6.37310 6.80352 7.00176 7.27304 7.79079 8.49567 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.074775 B = 0.005075 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.366080 B = 5515.851940 C = 5729.018896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.491 5.491 3 C 0.006 3.994 4 C 0.106 3.894 5 N -0.684 5.684 6 C 0.522 3.478 7 O -0.564 6.564 8 C 0.389 3.611 9 O -0.617 6.617 10 N -0.511 5.511 11 C -0.345 4.345 12 H 0.100 0.900 13 C -0.004 4.004 14 N -0.896 5.896 15 Si 1.010 2.990 16 H -0.263 1.263 17 H -0.266 1.266 18 H -0.266 1.266 19 C -0.009 4.009 20 H 0.042 0.958 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.109 0.891 24 H 0.092 0.908 25 H 0.109 0.891 26 H 0.417 0.583 27 H 0.401 0.599 28 H 0.289 0.711 29 H 0.083 0.917 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.868 -2.819 8.204 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.214 5.214 3 C -0.123 4.123 4 C 0.001 3.999 5 N -0.337 5.337 6 C 0.305 3.695 7 O -0.443 6.443 8 C 0.174 3.826 9 O -0.507 6.507 10 N -0.144 5.144 11 C -0.475 4.475 12 H 0.117 0.883 13 C -0.208 4.208 14 N -0.533 5.533 15 Si 0.831 3.169 16 H -0.187 1.187 17 H -0.191 1.191 18 H -0.191 1.191 19 C -0.138 4.138 20 H 0.061 0.939 21 H 0.096 0.904 22 H 0.101 0.899 23 H 0.127 0.873 24 H 0.110 0.890 25 H 0.127 0.873 26 H 0.255 0.745 27 H 0.235 0.765 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.484 -3.396 8.725 14.056 hybrid contribution 0.071 0.764 -1.207 1.430 sum -10.413 -2.632 7.518 13.110 Atomic orbital electron populations 1.22930 0.87615 1.03300 1.02110 1.68488 1.11001 1.18256 1.23608 1.24420 0.95879 0.92173 0.99858 1.23178 0.99454 0.90269 0.87046 1.45638 1.16933 1.37859 1.33270 1.20124 0.82906 0.83371 0.83074 1.90684 1.44923 1.40238 1.68433 1.19608 0.85066 0.89670 0.88276 1.90545 1.45076 1.43498 1.71556 1.41677 1.14401 1.30933 1.27414 1.20031 1.02762 1.14918 1.09791 0.88257 1.26544 0.93921 0.99077 1.01305 1.69550 1.07294 1.35081 1.41400 0.84637 0.78822 0.77221 0.76202 1.18721 1.19088 1.19083 1.24588 0.96943 1.00438 0.91869 0.93948 0.90448 0.89931 0.87274 0.88962 0.87257 0.74545 0.76468 0.90071 0.89850 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.16 9.65 127.69 1.23 1.07 16 2 N -0.49 -9.95 6.56 -931.54 -6.11 -16.06 16 3 C 0.01 0.11 7.73 86.41 0.67 0.78 16 4 C 0.11 2.78 4.43 46.45 0.21 2.99 16 5 N -0.68 -22.15 5.36 -447.32 -2.40 -24.54 16 6 C 0.52 22.41 7.87 87.08 0.69 23.10 16 7 O -0.56 -26.39 16.07 -3.50 -0.06 -26.45 16 8 C 0.39 19.72 7.82 87.08 0.68 20.40 16 9 O -0.62 -33.01 16.03 -3.71 -0.06 -33.07 16 10 N -0.51 -27.88 5.25 -308.87 -1.62 -29.50 16 11 C -0.35 -19.31 9.67 84.35 0.82 -18.50 16 12 H 0.10 5.71 7.15 -2.91 -0.02 5.69 16 13 C 0.00 -0.21 5.51 85.14 0.47 0.26 16 14 N -0.90 -47.93 13.03 21.76 0.28 -47.65 16 15 Si 1.01 40.41 29.56 68.60 2.03 42.44 16 16 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 17 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 18 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 19 C -0.01 -0.20 7.78 86.36 0.67 0.48 16 20 H 0.04 0.61 7.62 -2.39 -0.02 0.59 16 21 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 22 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.09 1.51 7.90 -2.38 -0.02 1.50 16 25 H 0.11 3.28 7.46 -2.38 -0.02 3.26 16 26 H 0.42 12.41 8.19 -92.70 -0.76 11.65 16 27 H 0.40 22.16 7.35 -92.71 -0.68 21.48 16 28 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 29 H 0.08 1.78 7.62 -2.38 -0.02 1.76 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -64.67 267.79 -2.77 -67.44 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: -0.26 Total: 36.83 kcal Atomic # 6 Polarization: 25.14 SS G_CDS: 5.43 Total: 30.57 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -9.85 Total: -117.76 kcal Atomic # 8 Polarization: -59.41 SS G_CDS: -0.12 Total: -59.52 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -64.67 -2.77 -67.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307621085.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.097 kcal (2) G-P(sol) polarization free energy of solvation -64.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds