Wall clock time and date at job start Mon Mar 30 2020 03:46:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.47962 * 111.00037 * 2 1
4 4 C 1.53935 * 86.30001 * 222.47236 * 3 2 1
5 5 N 1.46503 * 113.73471 * 138.02919 * 4 3 2
6 6 C 1.34771 * 120.00270 * 154.99776 * 5 4 3
7 7 O 1.21432 * 120.00142 * 359.97438 * 6 5 4
8 8 C 1.48837 * 119.99874 * 179.97438 * 6 5 4
9 9 O 1.21499 * 119.99956 * 359.97438 * 8 6 5
10 10 N 1.34771 * 119.99874 * 179.97438 * 8 6 5
11 11 C 1.36124 * 120.00046 * 179.97438 * 10 8 6
12 12 H 1.08004 * 119.99831 * 0.02562 * 11 10 8
13 13 C 1.39581 * 119.99793 * 179.97438 * 11 10 8
14 14 N 1.31011 * 120.00719 * 0.02562 * 13 11 10
15 15 Si 1.86811 * 119.99636 * 180.02562 * 13 11 10
16 16 H 1.48505 * 109.46839 * 0.02562 * 15 13 11
17 17 H 1.48503 * 109.46905 * 120.00045 * 15 13 11
18 18 H 1.48498 * 109.47299 * 240.00263 * 15 13 11
19 19 C 1.48187 * 111.07743 * 260.70938 * 2 1 3
20 20 H 1.08997 * 109.47192 * 60.00266 * 1 2 3
21 21 H 1.09005 * 109.47086 * 179.97438 * 1 2 3
22 22 H 1.08992 * 109.47437 * 300.00082 * 1 2 3
23 23 H 1.09002 * 113.76087 * 108.09701 * 3 2 1
24 24 H 1.09005 * 113.75858 * 336.84163 * 3 2 1
25 25 H 1.09005 * 113.73320 * 269.19614 * 4 3 2
26 26 H 0.97008 * 119.99634 * 334.99105 * 5 4 3
27 27 H 0.96995 * 120.00271 * 359.97438 * 10 8 6
28 28 H 0.96995 * 120.00406 * 179.97438 * 14 13 11
29 29 H 1.09005 * 113.65869 * 23.13541 * 19 2 1
30 30 H 1.09002 * 113.92722 * 251.82174 * 19 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9992 1.3813 0.0000
4 6 3.0214 0.8825 -1.0373
5 7 3.2485 1.8204 -2.1396
6 6 4.4120 1.7926 -2.8192
7 8 5.2724 0.9905 -2.5175
8 6 4.6424 2.7451 -3.9394
9 8 3.7814 3.5474 -4.2415
10 7 5.8061 2.7177 -4.6186
11 6 6.0167 3.5885 -5.6435
12 1 5.2513 4.3016 -5.9121
13 6 7.2221 3.5604 -6.3466
14 7 8.1508 2.6957 -6.0206
15 14 7.5113 4.7559 -7.7527
16 1 6.3171 5.6228 -7.9188
17 1 8.6960 5.5986 -7.4501
18 1 7.7509 3.9969 -9.0064
19 6 2.0019 -0.2232 -1.3646
20 1 -0.3633 0.5138 -0.8900
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3634 0.5138 0.8899
23 1 2.4459 1.6803 0.9483
24 1 1.3003 2.1201 -0.3924
25 1 3.9474 0.5117 -0.5975
26 1 2.5613 2.4614 -2.3804
27 1 6.4937 2.0775 -4.3772
28 1 8.9883 2.6760 -6.5095
29 1 1.3025 0.0447 -2.1566
30 1 2.4509 -1.2060 -1.5085
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307621085.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:56
Heat of formation + Delta-G solvation = -61.341113 kcal
Electronic energy + Delta-G solvation = -15349.412845 eV
Core-core repulsion = 12565.810250 eV
Total energy + Delta-G solvation = -2783.602595 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.106 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-41.66070 -40.51498 -38.92322 -36.42985 -35.00966 -33.43890 -30.73499 -27.93428
-27.18578 -25.68208 -23.68754 -21.45003 -21.03404 -20.32995 -18.71970 -17.95285
-17.14541 -16.77435 -16.55764 -16.34037 -15.76868 -15.65706 -14.93502 -14.57853
-14.14363 -13.82465 -13.72300 -13.63283 -12.98536 -12.80905 -12.57431 -12.31656
-12.12648 -12.07893 -11.81235 -11.67930 -10.33763 -10.28348 -10.20759 -9.89867
-8.66437 -6.11459 0.57282 1.41785 1.46162 1.57446 1.77545 2.28734
2.34946 2.86084 3.14149 3.27690 3.48005 3.82208 3.99047 4.08494
4.15710 4.43512 4.52588 4.63544 4.76912 4.90323 5.00476 5.24304
5.25226 5.32398 5.67691 5.93271 6.14521 6.37310 6.80352 7.00176
7.27304 7.79079 8.49567
Molecular weight = 227.11amu
Principal moments of inertia in cm(-1)
A = 0.074775 B = 0.005075 C = 0.004886
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 374.366080 B = 5515.851940 C = 5729.018896
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.011 4.011
2 N -0.491 5.491
3 C 0.006 3.994
4 C 0.106 3.894
5 N -0.684 5.684
6 C 0.522 3.478
7 O -0.564 6.564
8 C 0.389 3.611
9 O -0.617 6.617
10 N -0.511 5.511
11 C -0.345 4.345
12 H 0.100 0.900
13 C -0.004 4.004
14 N -0.896 5.896
15 Si 1.010 2.990
16 H -0.263 1.263
17 H -0.266 1.266
18 H -0.266 1.266
19 C -0.009 4.009
20 H 0.042 0.958
21 H 0.077 0.923
22 H 0.082 0.918
23 H 0.109 0.891
24 H 0.092 0.908
25 H 0.109 0.891
26 H 0.417 0.583
27 H 0.401 0.599
28 H 0.289 0.711
29 H 0.083 0.917
30 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.868 -2.819 8.204 13.906
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 N -0.214 5.214
3 C -0.123 4.123
4 C 0.001 3.999
5 N -0.337 5.337
6 C 0.305 3.695
7 O -0.443 6.443
8 C 0.174 3.826
9 O -0.507 6.507
10 N -0.144 5.144
11 C -0.475 4.475
12 H 0.117 0.883
13 C -0.208 4.208
14 N -0.533 5.533
15 Si 0.831 3.169
16 H -0.187 1.187
17 H -0.191 1.191
18 H -0.191 1.191
19 C -0.138 4.138
20 H 0.061 0.939
21 H 0.096 0.904
22 H 0.101 0.899
23 H 0.127 0.873
24 H 0.110 0.890
25 H 0.127 0.873
26 H 0.255 0.745
27 H 0.235 0.765
28 H 0.099 0.901
29 H 0.102 0.898
30 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -10.484 -3.396 8.725 14.056
hybrid contribution 0.071 0.764 -1.207 1.430
sum -10.413 -2.632 7.518 13.110
Atomic orbital electron populations
1.22930 0.87615 1.03300 1.02110 1.68488 1.11001 1.18256 1.23608
1.24420 0.95879 0.92173 0.99858 1.23178 0.99454 0.90269 0.87046
1.45638 1.16933 1.37859 1.33270 1.20124 0.82906 0.83371 0.83074
1.90684 1.44923 1.40238 1.68433 1.19608 0.85066 0.89670 0.88276
1.90545 1.45076 1.43498 1.71556 1.41677 1.14401 1.30933 1.27414
1.20031 1.02762 1.14918 1.09791 0.88257 1.26544 0.93921 0.99077
1.01305 1.69550 1.07294 1.35081 1.41400 0.84637 0.78822 0.77221
0.76202 1.18721 1.19088 1.19083 1.24588 0.96943 1.00438 0.91869
0.93948 0.90448 0.89931 0.87274 0.88962 0.87257 0.74545 0.76468
0.90071 0.89850 0.88944
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.01 -0.16 9.65 127.69 1.23 1.07 16
2 N -0.49 -9.95 6.56 -931.54 -6.11 -16.06 16
3 C 0.01 0.11 7.73 86.41 0.67 0.78 16
4 C 0.11 2.78 4.43 46.45 0.21 2.99 16
5 N -0.68 -22.15 5.36 -447.32 -2.40 -24.54 16
6 C 0.52 22.41 7.87 87.08 0.69 23.10 16
7 O -0.56 -26.39 16.07 -3.50 -0.06 -26.45 16
8 C 0.39 19.72 7.82 87.08 0.68 20.40 16
9 O -0.62 -33.01 16.03 -3.71 -0.06 -33.07 16
10 N -0.51 -27.88 5.25 -308.87 -1.62 -29.50 16
11 C -0.35 -19.31 9.67 84.35 0.82 -18.50 16
12 H 0.10 5.71 7.15 -2.91 -0.02 5.69 16
13 C 0.00 -0.21 5.51 85.14 0.47 0.26 16
14 N -0.90 -47.93 13.03 21.76 0.28 -47.65 16
15 Si 1.01 40.41 29.56 68.60 2.03 42.44 16
16 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16
17 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16
18 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16
19 C -0.01 -0.20 7.78 86.36 0.67 0.48 16
20 H 0.04 0.61 7.62 -2.39 -0.02 0.59 16
21 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16
22 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16
23 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16
24 H 0.09 1.51 7.90 -2.38 -0.02 1.50 16
25 H 0.11 3.28 7.46 -2.38 -0.02 3.26 16
26 H 0.42 12.41 8.19 -92.70 -0.76 11.65 16
27 H 0.40 22.16 7.35 -92.71 -0.68 21.48 16
28 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16
29 H 0.08 1.78 7.62 -2.38 -0.02 1.76 16
30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16
Total: -1.00 -64.67 267.79 -2.77 -67.44
By element:
Atomic # 1 Polarization: 37.09 SS G_CDS: -0.26 Total: 36.83 kcal
Atomic # 6 Polarization: 25.14 SS G_CDS: 5.43 Total: 30.57 kcal
Atomic # 7 Polarization: -107.91 SS G_CDS: -9.85 Total: -117.76 kcal
Atomic # 8 Polarization: -59.41 SS G_CDS: -0.12 Total: -59.52 kcal
Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal
Total: -64.67 -2.77 -67.44 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307621085.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.097 kcal
(2) G-P(sol) polarization free energy of solvation -64.672 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.574 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.767 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.438 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.341 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds