Wall clock time and date at job start Mon Mar 30 2020 03:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99867 * 2 1 4 4 H 1.48497 * 109.47193 * 270.00039 * 3 2 1 5 5 H 1.48500 * 109.47114 * 30.00473 * 3 2 1 6 6 H 1.48507 * 109.47004 * 150.00498 * 3 2 1 7 7 C 1.37882 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99566 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.46614 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99876 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47243 * 180.02562 * 11 10 9 13 13 O 1.21227 * 120.00041 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99776 * 180.02562 * 12 11 10 15 15 C 1.47057 * 125.40825 * 180.02562 * 14 12 11 16 16 C 1.54105 * 103.99235 * 179.97438 * 15 14 12 17 17 N 1.47394 * 103.70056 * 0.10684 * 16 15 14 18 18 C 1.33947 * 109.21036 * 359.88525 * 17 16 15 19 19 O 1.21536 * 123.04157 * 180.09266 * 18 17 16 20 20 H 0.97003 * 119.99851 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46693 * 60.00388 * 9 7 2 22 22 H 1.09000 * 109.47324 * 300.00204 * 9 7 2 23 23 H 1.00904 * 111.00411 * 303.95692 * 10 9 7 24 24 H 1.09004 * 109.47201 * 59.99705 * 11 10 9 25 25 H 1.09001 * 109.47448 * 300.00234 * 11 10 9 26 26 H 1.09002 * 110.54831 * 298.59337 * 15 14 12 27 27 H 1.08997 * 110.54826 * 61.25812 * 15 14 12 28 28 H 1.08996 * 110.55034 * 118.66113 * 16 15 14 29 29 H 1.09001 * 110.54910 * 241.47819 * 16 15 14 30 30 H 0.97000 * 125.37712 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 6 2.5149 -6.0259 -0.0005 13 8 3.7004 -5.7727 -0.0001 14 7 2.0997 -7.3081 -0.0014 15 6 2.9774 -8.4880 -0.0004 16 6 2.0001 -9.6795 -0.0015 17 7 0.6715 -9.0412 -0.0057 18 6 0.8220 -7.7103 -0.0043 19 8 -0.1159 -6.9373 -0.0055 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 2.8406 -3.5486 -0.7819 24 1 0.8807 -4.9812 -0.8914 25 1 0.8801 -4.9818 0.8886 26 1 3.5991 -8.5032 -0.8957 27 1 3.5982 -8.5022 0.8954 28 1 2.1370 -10.2858 -0.8968 29 1 2.1333 -10.2844 0.8955 30 1 -0.1771 -9.5110 -0.0076 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308519758.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:51 Heat of formation + Delta-G solvation = -41.393927 kcal Electronic energy + Delta-G solvation = -15466.004758 eV Core-core repulsion = 12683.267138 eV Total energy + Delta-G solvation = -2782.737620 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.87823 -38.74801 -36.77682 -34.83743 -33.90963 -32.29425 -29.57738 -28.00309 -25.39980 -23.37010 -23.13893 -21.26315 -19.42280 -17.99776 -17.28795 -16.99303 -16.10728 -15.49254 -15.13125 -14.71367 -14.49452 -14.09884 -13.95075 -13.60091 -13.00823 -12.72049 -12.54843 -12.27143 -11.44878 -11.27302 -10.70744 -10.68704 -10.40759 -10.06719 -9.83191 -9.81253 -9.38305 -9.12101 -8.42793 -7.28413 -5.97006 -3.98813 2.05580 2.16963 3.15623 3.37569 3.41055 3.43059 3.49074 3.95389 4.47648 4.52025 4.55128 4.88741 5.15202 5.23339 5.29839 5.38420 5.43723 5.97758 6.13994 6.50364 6.63794 6.86351 7.26238 7.45274 7.82058 7.95340 8.13218 8.19465 8.41344 8.63119 9.10252 9.65534 11.14197 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.063157 B = 0.005174 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.232396 B = 5410.335006 C = 5820.349414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.513 4.513 8 H 0.064 0.936 9 C 0.196 3.804 10 N -0.679 5.679 11 C 0.056 3.944 12 C 0.545 3.455 13 O -0.485 6.485 14 N -0.586 5.586 15 C 0.080 3.920 16 C 0.093 3.907 17 N -0.734 5.734 18 C 0.698 3.302 19 O -0.544 6.544 20 H 0.261 0.739 21 H -0.010 1.010 22 H 0.031 0.969 23 H 0.336 0.664 24 H 0.063 0.937 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.030 -22.004 -0.900 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.312 5.312 11 C -0.076 4.076 12 C 0.336 3.664 13 O -0.354 6.354 14 N -0.335 5.335 15 C -0.043 4.043 16 C -0.032 4.032 17 N -0.397 5.397 18 C 0.398 3.602 19 O -0.418 6.418 20 H 0.071 0.929 21 H 0.008 0.992 22 H 0.049 0.951 23 H 0.153 0.847 24 H 0.081 0.919 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 3.209 -21.096 -0.207 21.339 hybrid contribution -0.270 0.361 -0.881 0.990 sum 2.938 -20.734 -1.088 20.970 Atomic orbital electron populations 1.69975 1.06076 1.26780 1.50910 1.24990 0.94887 0.99363 0.95350 0.86450 0.79800 0.82877 0.78003 1.20734 1.21259 1.19716 1.21177 0.93654 0.90020 1.50336 0.91758 1.19600 0.90426 0.86851 0.96178 1.60544 1.20855 0.99778 1.49990 1.21876 0.93361 0.88428 1.03921 1.21413 0.90809 0.81117 0.73037 1.90698 1.17815 1.82250 1.44629 1.46470 1.08174 1.08069 1.70826 1.22585 0.93986 0.82523 1.05205 1.22512 0.81442 0.95476 1.03807 1.45281 1.09433 1.05490 1.79531 1.15970 0.83221 0.83488 0.77555 1.91080 1.40860 1.55279 1.54570 0.92914 0.99212 0.95071 0.84679 0.91910 0.87529 0.88649 0.88553 0.89291 0.89257 0.72411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.29 55.43 0.74 -26.92 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.51 -15.24 9.32 -34.44 -0.32 -15.56 16 8 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.20 5.44 5.44 -4.97 -0.03 5.42 16 10 N -0.68 -16.22 6.11 -116.33 -0.71 -16.93 16 11 C 0.06 1.15 4.45 -4.98 -0.02 1.12 16 12 C 0.55 9.68 7.83 -10.99 -0.09 9.59 16 13 O -0.48 -9.60 16.51 5.60 0.09 -9.51 16 14 N -0.59 -7.95 3.00 -120.14 -0.36 -8.31 16 15 C 0.08 0.66 7.20 -3.16 -0.02 0.63 16 16 C 0.09 0.45 8.08 -2.98 -0.02 0.43 16 17 N -0.73 -5.98 6.39 -64.47 -0.41 -6.39 16 18 C 0.70 9.40 8.51 -88.40 -0.75 8.65 16 19 O -0.54 -9.59 15.00 5.33 0.08 -9.51 16 20 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 21 H -0.01 -0.29 8.14 -51.93 -0.42 -0.71 16 22 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.34 7.84 8.42 -39.29 -0.33 7.51 16 24 H 0.06 1.29 7.57 -51.93 -0.39 0.89 16 25 H 0.11 2.23 7.58 -51.93 -0.39 1.83 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.43 2.58 8.96 -40.82 -0.37 2.21 16 LS Contribution 264.95 15.07 3.99 3.99 Total: -1.00 -36.07 264.95 -6.52 -42.59 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -3.56 Total: 1.81 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -1.35 Total: 11.83 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.75 Total: -58.56 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.17 Total: -19.03 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -36.07 -6.52 -42.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308519758.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.193 kcal (2) G-P(sol) polarization free energy of solvation -36.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds