Wall clock time and date at job start Mon Mar 30 2020 03:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99867 * 2 1 4 4 H 1.48497 * 109.47193 * 270.00039 * 3 2 1 5 5 H 1.48500 * 109.47114 * 30.00473 * 3 2 1 6 6 H 1.48507 * 109.47004 * 150.00498 * 3 2 1 7 7 C 1.37882 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99566 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.46614 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99876 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47243 * 180.02562 * 11 10 9 13 13 O 1.21227 * 120.00041 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99776 * 180.02562 * 12 11 10 15 15 C 1.47057 * 125.40825 * 180.02562 * 14 12 11 16 16 C 1.54105 * 103.99235 * 179.97438 * 15 14 12 17 17 N 1.47394 * 103.70056 * 0.10684 * 16 15 14 18 18 C 1.33947 * 109.21036 * 359.88525 * 17 16 15 19 19 O 1.21536 * 123.04157 * 180.09266 * 18 17 16 20 20 H 0.97003 * 119.99851 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46693 * 60.00388 * 9 7 2 22 22 H 1.09000 * 109.47324 * 300.00204 * 9 7 2 23 23 H 1.00904 * 111.00411 * 303.95692 * 10 9 7 24 24 H 1.09004 * 109.47201 * 59.99705 * 11 10 9 25 25 H 1.09001 * 109.47448 * 300.00234 * 11 10 9 26 26 H 1.09002 * 110.54831 * 298.59337 * 15 14 12 27 27 H 1.08997 * 110.54826 * 61.25812 * 15 14 12 28 28 H 1.08996 * 110.55034 * 118.66113 * 16 15 14 29 29 H 1.09001 * 110.54910 * 241.47819 * 16 15 14 30 30 H 0.97000 * 125.37712 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 6 2.5149 -6.0259 -0.0005 13 8 3.7004 -5.7727 -0.0001 14 7 2.0997 -7.3081 -0.0014 15 6 2.9774 -8.4880 -0.0004 16 6 2.0001 -9.6795 -0.0015 17 7 0.6715 -9.0412 -0.0057 18 6 0.8220 -7.7103 -0.0043 19 8 -0.1159 -6.9373 -0.0055 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 2.8406 -3.5486 -0.7819 24 1 0.8807 -4.9812 -0.8914 25 1 0.8801 -4.9818 0.8886 26 1 3.5991 -8.5032 -0.8957 27 1 3.5982 -8.5022 0.8954 28 1 2.1370 -10.2858 -0.8968 29 1 2.1333 -10.2844 0.8955 30 1 -0.1771 -9.5110 -0.0076 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308519758.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:51 Heat of formation + Delta-G solvation = -72.138926 kcal Electronic energy + Delta-G solvation = -15467.337961 eV Core-core repulsion = 12683.267138 eV Total energy + Delta-G solvation = -2784.070823 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.91816 -40.10644 -37.85903 -36.78561 -34.95387 -34.46848 -30.59022 -29.68830 -27.14894 -24.78121 -23.98234 -23.26937 -20.64481 -19.03624 -18.75132 -18.24847 -17.77644 -16.89876 -16.61626 -16.29414 -15.75941 -15.32412 -15.09985 -14.95552 -14.84814 -14.32723 -13.47660 -13.42086 -13.28295 -13.13159 -12.69248 -12.64860 -12.09333 -11.66272 -11.56567 -11.20203 -10.94919 -10.68410 -10.08628 -9.29536 -8.23947 -6.36177 0.72869 1.13678 1.41573 1.44240 1.56575 2.01697 2.39854 2.62083 3.09083 3.25827 3.49492 3.59000 4.00094 4.06104 4.27519 4.44129 4.56691 4.72088 4.86972 4.98696 5.16472 5.39515 5.56009 5.78325 5.93041 5.98684 6.29289 6.52363 6.66246 6.81756 7.19933 7.34365 8.88139 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.063157 B = 0.005174 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.232396 B = 5410.335006 C = 5820.349414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.980 3.020 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.210 3.790 10 N -0.679 5.679 11 C 0.059 3.941 12 C 0.556 3.444 13 O -0.509 6.509 14 N -0.585 5.585 15 C 0.068 3.932 16 C 0.100 3.900 17 N -0.711 5.711 18 C 0.687 3.313 19 O -0.596 6.596 20 H 0.267 0.733 21 H -0.033 1.033 22 H 0.004 0.996 23 H 0.339 0.661 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.308 -23.588 -1.000 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.803 3.197 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.578 4.578 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.312 5.312 11 C -0.073 4.073 12 C 0.346 3.654 13 O -0.380 6.380 14 N -0.333 5.333 15 C -0.053 4.053 16 C -0.023 4.023 17 N -0.375 5.375 18 C 0.387 3.613 19 O -0.474 6.474 20 H 0.076 0.924 21 H -0.015 1.015 22 H 0.023 0.977 23 H 0.157 0.843 24 H 0.076 0.924 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 4.493 -22.801 -0.310 23.241 hybrid contribution -0.707 0.690 -0.847 1.301 sum 3.786 -22.111 -1.157 22.462 Atomic orbital electron populations 1.70103 1.07869 1.28214 1.51129 1.26000 0.95850 1.03511 0.94266 0.85236 0.78376 0.77470 0.78609 1.19445 1.20393 1.18946 1.21491 0.93856 0.91146 1.51289 0.91701 1.19258 0.90396 0.88298 0.93758 1.60393 1.20256 1.00377 1.50136 1.21756 0.94030 0.88255 1.03272 1.20553 0.89462 0.82231 0.73184 1.90684 1.18136 1.83113 1.46115 1.46199 1.09495 1.07979 1.69623 1.23083 0.94491 0.81212 1.06469 1.22876 0.78029 0.94093 1.07293 1.45250 1.11637 1.03470 1.77095 1.16270 0.82445 0.84953 0.77586 1.91048 1.42279 1.57106 1.56946 0.92423 1.01533 0.97746 0.84300 0.92368 0.88620 0.87409 0.87544 0.85788 0.85868 0.70910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.46 13.29 21.45 0.28 -58.18 16 2 C 0.00 0.12 5.46 84.66 0.46 0.59 16 3 Si 0.98 45.96 29.54 68.60 2.03 47.98 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.54 -32.73 9.32 25.60 0.24 -32.49 16 8 H 0.06 3.84 7.81 -2.91 -0.02 3.82 16 9 C 0.21 12.25 5.44 85.56 0.47 12.72 16 10 N -0.68 -33.71 6.11 -521.97 -3.19 -36.90 16 11 C 0.06 2.51 4.45 85.56 0.38 2.89 16 12 C 0.56 19.90 7.83 87.66 0.69 20.59 16 13 O -0.51 -20.14 16.51 -2.87 -0.05 -20.18 16 14 N -0.59 -15.31 3.00 -771.18 -2.32 -17.63 16 15 C 0.07 0.92 7.20 86.65 0.62 1.54 16 16 C 0.10 0.53 8.08 86.58 0.70 1.23 16 17 N -0.71 -9.59 6.39 -476.64 -3.04 -12.64 16 18 C 0.69 17.98 8.51 179.57 1.53 19.51 16 19 O -0.60 -21.57 15.00 -3.83 -0.06 -21.63 16 20 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 21 H -0.03 -2.03 8.14 -2.39 -0.02 -2.05 16 22 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 23 H 0.34 16.34 8.42 -89.69 -0.76 15.58 16 24 H 0.06 2.53 7.57 -2.38 -0.02 2.51 16 25 H 0.10 4.25 7.58 -2.39 -0.02 4.23 16 26 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.45 4.04 8.96 -92.71 -0.83 3.21 16 Total: -1.00 -80.86 264.95 -1.67 -82.54 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -0.41 Total: 10.07 kcal Atomic # 6 Polarization: 21.48 SS G_CDS: 5.08 Total: 26.56 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -8.27 Total: -125.34 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.10 Total: -41.82 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -80.86 -1.67 -82.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308519758.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.397 kcal (2) G-P(sol) polarization free energy of solvation -80.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds