Wall clock time and date at job start Mon Mar 30 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.50699 * 109.47681 * 340.26414 * 3 2 1 5 5 C 1.37485 * 120.15896 * 264.72727 * 4 3 2 6 6 C 1.38927 * 120.54523 * 179.78871 * 5 4 3 7 7 C 1.38728 * 120.23864 * 0.48402 * 6 5 4 8 8 C 1.37849 * 120.10879 * 359.74759 * 7 6 5 9 9 C 1.40607 * 120.01154 * 0.02562 * 8 7 6 10 10 C 1.41398 * 120.29621 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99760 * 154.58111 * 10 9 8 12 12 C 1.39944 * 119.99759 * 334.58307 * 10 9 8 13 13 N 1.30826 * 120.00401 * 342.84102 * 12 10 9 14 14 Si 1.86804 * 119.99730 * 162.84251 * 12 10 9 15 15 H 1.48505 * 109.46973 * 94.65024 * 14 12 10 16 16 H 1.48499 * 109.47035 * 214.64551 * 14 12 10 17 17 H 1.48498 * 109.47393 * 334.65250 * 14 12 10 18 18 C 1.51420 * 109.69329 * 179.77061 * 7 6 5 19 19 C 1.54315 * 105.18388 * 17.25436 * 18 7 6 20 20 C 1.51453 * 130.13357 * 180.19161 * 6 5 4 21 21 H 1.09002 * 109.47118 * 100.26593 * 3 2 1 22 22 H 1.09001 * 109.46954 * 220.26112 * 3 2 1 23 23 H 1.08003 * 119.72934 * 0.02562 * 5 4 3 24 24 H 1.08001 * 120.00013 * 179.97438 * 8 7 6 25 25 H 0.96991 * 120.00408 * 180.02562 * 13 12 10 26 26 H 1.09004 * 110.30084 * 136.18199 * 18 7 6 27 27 H 1.08996 * 110.29946 * 258.22617 * 18 7 6 28 28 H 1.09000 * 110.81289 * 91.74882 * 19 18 7 29 29 H 1.08999 * 110.80678 * 215.26291 * 19 18 7 30 30 H 1.09003 * 110.29450 * 44.07123 * 20 6 5 31 31 H 1.09005 * 110.37977 * 281.97727 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1111 -1.3364 0.4798 5 6 3.4445 -1.5152 1.8015 6 6 3.9049 -2.7456 2.2534 7 6 4.0429 -3.8070 1.3707 8 6 3.7184 -3.6468 0.0406 9 6 3.2472 -2.4061 -0.4240 10 6 2.9132 -2.2350 -1.7872 11 1 2.1974 -1.4801 -2.0771 12 6 3.5101 -3.0440 -2.7607 13 7 4.5986 -3.7125 -2.4782 14 14 2.7526 -3.1692 -4.4637 15 1 3.4084 -2.1926 -5.3701 16 1 2.9473 -4.5432 -4.9923 17 1 1.3001 -2.8711 -4.3826 18 6 4.5632 -5.0214 2.1104 19 6 4.3120 -4.7236 3.6036 20 6 4.3243 -3.1810 3.6420 21 1 2.9713 0.1840 -1.0112 22 1 2.9710 0.7851 0.6642 23 1 3.3440 -0.6934 2.4951 24 1 3.8269 -4.4741 -0.6451 25 1 5.0125 -4.2729 -3.1530 26 1 4.0158 -5.9133 1.8054 27 1 5.6292 -5.1503 1.9231 28 1 3.3430 -5.1111 3.9181 29 1 5.1125 -5.1327 4.2200 30 1 3.6138 -2.8156 4.3835 31 1 5.3265 -2.8163 3.8676 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308526825.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:55 Heat of formation + Delta-G solvation = 23.024759 kcal Electronic energy + Delta-G solvation = -14833.047417 eV Core-core repulsion = 12463.952464 eV Total energy + Delta-G solvation = -2369.094953 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.79329 -36.30309 -35.10096 -33.32887 -30.69500 -29.65713 -27.84904 -25.38428 -24.59273 -21.31905 -19.83040 -19.30804 -17.10014 -16.46269 -15.49935 -14.93019 -14.59470 -14.04030 -13.70617 -13.26363 -12.63399 -12.41039 -12.17157 -12.13995 -11.66807 -11.56171 -11.43492 -11.12825 -10.99161 -10.76044 -10.65388 -10.50223 -10.40665 -9.93834 -9.60695 -9.42021 -9.13561 -7.38954 -7.25038 -6.83584 -4.45238 2.63733 2.82882 3.03756 3.07961 3.15985 3.53913 3.58962 3.87438 4.48208 4.94808 5.32211 5.44797 5.55516 5.57390 5.95492 6.04076 6.13911 6.26006 6.30362 6.36353 6.41585 6.47958 6.55302 6.63128 6.75670 6.99463 7.23005 7.31684 7.54102 7.72228 7.93060 8.07217 8.17721 8.33370 8.51004 8.77899 8.86320 10.08533 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.010752 C = 0.007555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.062404 B = 2603.583258 C = 3705.440986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.231 3.769 3 C 0.037 3.963 4 C -0.211 4.211 5 C -0.060 4.060 6 C -0.223 4.223 7 C -0.078 4.078 8 C -0.147 4.147 9 C 0.127 3.873 10 C -0.459 4.459 11 H 0.079 0.921 12 C 0.079 3.921 13 N -0.786 5.786 14 Si 0.902 3.098 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.260 1.260 18 C -0.077 4.077 19 C -0.119 4.119 20 C -0.058 4.058 21 H 0.111 0.889 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.117 0.883 25 H 0.282 0.718 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.749 0.270 4.075 4.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.085 4.085 3 C -0.002 4.002 4 C -0.214 4.214 5 C -0.078 4.078 6 C -0.224 4.224 7 C -0.078 4.078 8 C -0.166 4.166 9 C 0.125 3.875 10 C -0.488 4.488 11 H 0.098 0.902 12 C -0.139 4.139 13 N -0.411 5.411 14 Si 0.726 3.274 15 H -0.194 1.194 16 H -0.200 1.200 17 H -0.184 1.184 18 C -0.114 4.114 19 C -0.157 4.157 20 C -0.096 4.096 21 H 0.129 0.871 22 H 0.111 0.889 23 H 0.107 0.893 24 H 0.135 0.865 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.227 0.121 3.958 4.146 hybrid contribution 0.254 -0.209 -0.878 0.937 sum 1.481 -0.087 3.080 3.419 Atomic orbital electron populations 1.81047 1.13501 1.10530 1.10499 1.29691 0.95610 0.91463 0.91737 1.17889 0.80614 0.97468 1.04273 1.19022 1.14436 0.93705 0.94210 1.19848 0.98931 0.94988 0.94032 1.19816 1.12812 0.95147 0.94636 1.20221 0.99129 0.94436 0.94043 1.20794 1.05258 0.98007 0.92540 1.17270 0.88332 0.89623 0.92319 1.19550 1.21919 1.16444 0.90861 0.90246 1.25885 0.93404 0.93508 1.01146 1.69813 1.13852 1.21554 1.35893 0.86390 0.80973 0.78564 0.81489 1.19374 1.19959 1.18399 1.20921 1.00085 0.96591 0.93779 1.22215 1.00634 0.96430 0.96381 1.20670 0.99465 0.94449 0.94975 0.87099 0.88883 0.89284 0.86513 0.90739 0.92320 0.91600 0.92002 0.92108 0.93081 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.36 18.54 42.16 0.78 -9.58 16 2 C 0.23 4.59 15.02 -20.76 -0.31 4.28 16 3 C 0.04 0.67 5.20 -30.67 -0.16 0.51 16 4 C -0.21 -4.58 5.14 -103.97 -0.53 -5.12 16 5 C -0.06 -1.24 9.65 -39.60 -0.38 -1.62 16 6 C -0.22 -4.69 6.16 -103.82 -0.64 -5.33 16 7 C -0.08 -1.74 6.12 -104.23 -0.64 -2.37 16 8 C -0.15 -3.63 8.69 -38.83 -0.34 -3.97 16 9 C 0.13 3.13 5.56 -106.87 -0.59 2.54 16 10 C -0.46 -11.28 8.15 -37.74 -0.31 -11.58 16 11 H 0.08 1.90 6.65 -52.49 -0.35 1.55 16 12 C 0.08 1.89 5.15 -17.34 -0.09 1.80 16 13 N -0.79 -19.21 10.98 55.55 0.61 -18.60 16 14 Si 0.90 18.11 29.59 -169.99 -5.03 13.08 16 15 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 16 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 18 C -0.08 -1.40 6.77 -26.84 -0.18 -1.58 16 19 C -0.12 -1.87 7.07 -25.36 -0.18 -2.05 16 20 C -0.06 -1.00 6.77 -26.83 -0.18 -1.18 16 21 H 0.11 1.92 7.06 -51.93 -0.37 1.55 16 22 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 23 H 0.09 1.61 8.06 -52.48 -0.42 1.18 16 24 H 0.12 3.02 6.20 -52.49 -0.33 2.69 16 25 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 269.04 15.07 4.05 4.05 Total: -1.00 -27.01 269.04 -7.67 -34.68 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -3.55 Total: 2.05 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -4.54 Total: -25.69 kcal Atomic # 7 Polarization: -29.57 SS G_CDS: 1.39 Total: -28.18 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.01 -7.67 -34.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308526825.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.710 kcal (2) G-P(sol) polarization free energy of solvation -27.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds