Wall clock time and date at job start Mon Mar 30 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.50699 * 109.47681 * 340.26414 * 3 2 1 5 5 C 1.37485 * 120.15896 * 264.72727 * 4 3 2 6 6 C 1.38927 * 120.54523 * 179.78871 * 5 4 3 7 7 C 1.38728 * 120.23864 * 0.48402 * 6 5 4 8 8 C 1.37849 * 120.10879 * 359.74759 * 7 6 5 9 9 C 1.40607 * 120.01154 * 0.02562 * 8 7 6 10 10 C 1.41398 * 120.29621 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99760 * 154.58111 * 10 9 8 12 12 C 1.39944 * 119.99759 * 334.58307 * 10 9 8 13 13 N 1.30826 * 120.00401 * 342.84102 * 12 10 9 14 14 Si 1.86804 * 119.99730 * 162.84251 * 12 10 9 15 15 H 1.48505 * 109.46973 * 94.65024 * 14 12 10 16 16 H 1.48499 * 109.47035 * 214.64551 * 14 12 10 17 17 H 1.48498 * 109.47393 * 334.65250 * 14 12 10 18 18 C 1.51420 * 109.69329 * 179.77061 * 7 6 5 19 19 C 1.54315 * 105.18388 * 17.25436 * 18 7 6 20 20 C 1.51453 * 130.13357 * 180.19161 * 6 5 4 21 21 H 1.09002 * 109.47118 * 100.26593 * 3 2 1 22 22 H 1.09001 * 109.46954 * 220.26112 * 3 2 1 23 23 H 1.08003 * 119.72934 * 0.02562 * 5 4 3 24 24 H 1.08001 * 120.00013 * 179.97438 * 8 7 6 25 25 H 0.96991 * 120.00408 * 180.02562 * 13 12 10 26 26 H 1.09004 * 110.30084 * 136.18199 * 18 7 6 27 27 H 1.08996 * 110.29946 * 258.22617 * 18 7 6 28 28 H 1.09000 * 110.81289 * 91.74882 * 19 18 7 29 29 H 1.08999 * 110.80678 * 215.26291 * 19 18 7 30 30 H 1.09003 * 110.29450 * 44.07123 * 20 6 5 31 31 H 1.09005 * 110.37977 * 281.97727 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1111 -1.3364 0.4798 5 6 3.4445 -1.5152 1.8015 6 6 3.9049 -2.7456 2.2534 7 6 4.0429 -3.8070 1.3707 8 6 3.7184 -3.6468 0.0406 9 6 3.2472 -2.4061 -0.4240 10 6 2.9132 -2.2350 -1.7872 11 1 2.1974 -1.4801 -2.0771 12 6 3.5101 -3.0440 -2.7607 13 7 4.5986 -3.7125 -2.4782 14 14 2.7526 -3.1692 -4.4637 15 1 3.4084 -2.1926 -5.3701 16 1 2.9473 -4.5432 -4.9923 17 1 1.3001 -2.8711 -4.3826 18 6 4.5632 -5.0214 2.1104 19 6 4.3120 -4.7236 3.6036 20 6 4.3243 -3.1810 3.6420 21 1 2.9713 0.1840 -1.0112 22 1 2.9710 0.7851 0.6642 23 1 3.3440 -0.6934 2.4951 24 1 3.8269 -4.4741 -0.6451 25 1 5.0125 -4.2729 -3.1530 26 1 4.0158 -5.9133 1.8054 27 1 5.6292 -5.1503 1.9231 28 1 3.3430 -5.1111 3.9181 29 1 5.1125 -5.1327 4.2200 30 1 3.6138 -2.8156 4.3835 31 1 5.3265 -2.8163 3.8676 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308526825.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:55 Heat of formation + Delta-G solvation = 10.723250 kcal Electronic energy + Delta-G solvation = -14833.580851 eV Core-core repulsion = 12463.952464 eV Total energy + Delta-G solvation = -2369.628387 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.39991 -37.87516 -36.73429 -35.02643 -32.28718 -31.26034 -29.44827 -26.89627 -26.26785 -22.96071 -21.27331 -20.97059 -18.83755 -18.04701 -17.14837 -16.30996 -16.20486 -15.59307 -15.33665 -14.81722 -14.30617 -14.04154 -13.79001 -13.53815 -13.30477 -13.13658 -13.04477 -12.75720 -12.53786 -12.31607 -12.17309 -11.92419 -11.82852 -11.44801 -11.26981 -11.09040 -10.84171 -9.12372 -8.95393 -8.57885 -6.27329 0.94565 1.12488 1.38263 1.47365 1.53419 1.96595 1.99124 2.20111 2.74722 3.37211 3.84472 3.93696 4.04969 4.31094 4.48844 4.58002 4.73295 4.79165 4.88836 5.01064 5.04554 5.11708 5.11943 5.22853 5.23924 5.47988 5.48426 5.63123 5.82947 6.02004 6.19911 6.36200 6.43031 6.72743 6.78044 6.98262 7.11687 8.35518 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.010752 C = 0.007555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.062404 B = 2603.583258 C = 3705.440986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.248 3.752 3 C 0.042 3.958 4 C -0.213 4.213 5 C -0.070 4.070 6 C -0.228 4.228 7 C -0.097 4.097 8 C -0.182 4.182 9 C 0.095 3.905 10 C -0.487 4.487 11 H 0.077 0.923 12 C 0.043 3.957 13 N -0.819 5.819 14 Si 0.963 3.037 15 H -0.257 1.257 16 H -0.270 1.270 17 H -0.269 1.269 18 C -0.080 4.080 19 C -0.110 4.110 20 C -0.058 4.058 21 H 0.116 0.884 22 H 0.139 0.861 23 H 0.123 0.877 24 H 0.091 0.909 25 H 0.286 0.714 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.185 0.972 5.684 6.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.068 4.068 3 C 0.003 3.997 4 C -0.216 4.216 5 C -0.088 4.088 6 C -0.229 4.229 7 C -0.097 4.097 8 C -0.201 4.201 9 C 0.092 3.908 10 C -0.517 4.517 11 H 0.095 0.905 12 C -0.173 4.173 13 N -0.445 5.445 14 Si 0.785 3.215 15 H -0.182 1.182 16 H -0.195 1.195 17 H -0.194 1.194 18 C -0.117 4.117 19 C -0.147 4.147 20 C -0.095 4.095 21 H 0.134 0.866 22 H 0.157 0.843 23 H 0.141 0.859 24 H 0.109 0.891 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.670 0.827 5.576 5.879 hybrid contribution 0.155 -0.424 -1.242 1.322 sum 1.825 0.404 4.334 4.720 Atomic orbital electron populations 1.81059 1.14645 1.11698 1.11853 1.29987 0.95842 0.90367 0.90599 1.18061 0.79185 0.96847 1.05657 1.19406 1.13297 0.94492 0.94404 1.20297 0.98119 0.96146 0.94215 1.20482 1.11020 0.94773 0.96604 1.20721 0.98585 0.96887 0.93556 1.20792 1.07891 0.97817 0.93629 1.17636 0.89362 0.90598 0.93168 1.19701 1.22816 1.17568 0.91571 0.90473 1.26550 0.93487 0.93070 1.04195 1.69874 1.14962 1.22573 1.37080 0.85466 0.79412 0.78824 0.77755 1.18170 1.19464 1.19360 1.21025 1.00155 0.95077 0.95430 1.22234 1.02305 0.95621 0.94519 1.20763 1.00672 0.95324 0.92728 0.86588 0.84286 0.85897 0.89054 0.90359 0.92260 0.91097 0.91321 0.88878 0.91250 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -21.94 18.54 20.01 0.37 -21.57 16 2 C 0.25 9.51 15.02 89.44 1.34 10.86 16 3 C 0.04 1.41 5.20 28.04 0.15 1.56 16 4 C -0.21 -9.07 5.14 -19.44 -0.10 -9.17 16 5 C -0.07 -2.74 9.65 22.26 0.21 -2.52 16 6 C -0.23 -9.12 6.16 -19.34 -0.12 -9.24 16 7 C -0.10 -4.32 6.12 -19.61 -0.12 -4.44 16 8 C -0.18 -9.32 8.69 22.76 0.20 -9.12 16 9 C 0.09 4.76 5.56 -21.32 -0.12 4.64 16 10 C -0.49 -24.65 8.15 23.46 0.19 -24.46 16 11 H 0.08 3.78 6.65 -2.91 -0.02 3.76 16 12 C 0.04 2.08 5.15 85.26 0.44 2.52 16 13 N -0.82 -41.59 10.98 21.83 0.24 -41.35 16 14 Si 0.96 38.04 29.59 68.60 2.03 40.07 16 15 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 16 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 17 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 18 C -0.08 -2.82 6.77 30.52 0.21 -2.61 16 19 C -0.11 -3.06 7.07 31.49 0.22 -2.83 16 20 C -0.06 -1.76 6.77 30.53 0.21 -1.56 16 21 H 0.12 3.87 7.06 -2.39 -0.02 3.85 16 22 H 0.14 3.42 8.05 -2.39 -0.02 3.40 16 23 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 24 H 0.09 5.02 6.20 -2.91 -0.02 5.00 16 25 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 26 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -59.93 269.04 6.49 -53.44 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.14 Total: 15.78 kcal Atomic # 6 Polarization: -49.08 SS G_CDS: 2.71 Total: -46.37 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: 0.61 Total: -62.91 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -59.93 6.49 -53.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308526825.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.163 kcal (2) G-P(sol) polarization free energy of solvation -59.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds