Wall clock time and date at job start Mon Mar 30 2020 03:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99948 * 2 1 4 4 H 1.48501 * 109.47214 * 240.00024 * 3 2 1 5 5 H 1.48505 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47258 * 119.99716 * 3 2 1 7 7 C 1.38952 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00054 * 180.02562 * 7 2 1 9 9 N 1.37092 * 119.99714 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99635 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00269 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99715 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46656 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99573 * 179.97438 * 13 12 10 15 15 H 1.08997 * 110.43611 * 32.45551 * 14 13 12 16 16 C 1.54630 * 110.48360 * 155.00198 * 14 13 12 17 17 C 1.54473 * 101.76450 * 93.88016 * 16 14 13 18 18 N 1.46767 * 105.47618 * 25.41683 * 17 16 14 19 19 C 1.34417 * 111.29968 * 342.97827 * 18 17 16 20 20 O 1.21277 * 124.94483 * 180.45098 * 19 18 17 21 21 H 0.96997 * 119.99955 * 0.02562 * 1 2 3 22 22 H 0.96993 * 120.00778 * 0.02562 * 9 7 2 23 23 H 1.08990 * 109.47142 * 59.99633 * 12 10 9 24 24 H 1.09004 * 109.46726 * 299.99530 * 12 10 9 25 25 H 1.00896 * 111.00219 * 303.95295 * 13 12 10 26 26 H 1.09003 * 110.96285 * 211.99666 * 16 14 13 27 27 H 1.08997 * 110.97145 * 335.72229 * 16 14 13 28 28 H 1.09001 * 110.24591 * 144.41739 * 17 16 14 29 29 H 1.09001 * 110.24874 * 266.41064 * 17 16 14 30 30 H 0.97003 * 124.35078 * 162.98888 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9975 -3.5578 0.0026 11 8 3.2104 -3.5578 0.0022 12 6 1.2439 -4.8630 0.0032 13 7 2.1986 -5.9795 0.0037 14 6 1.4983 -7.2708 0.0049 15 1 0.5591 -7.1950 -0.5429 16 6 2.3942 -8.3728 -0.6067 17 6 3.0635 -8.9690 0.6514 18 7 2.1377 -8.6917 1.7561 19 6 1.2513 -7.7379 1.4225 20 8 0.3807 -7.3129 2.1521 21 1 -0.4850 0.8400 -0.0004 22 1 0.3535 -2.3907 0.0016 23 1 0.6176 -4.9213 -0.8868 24 1 0.6170 -4.9201 0.8931 25 1 2.8335 -5.9127 -0.7776 26 1 1.7935 -9.1227 -1.1215 27 1 3.1376 -7.9432 -1.2782 28 1 3.1985 -10.0441 0.5333 29 1 4.0233 -8.4854 0.8332 30 1 2.1624 -9.1392 2.6163 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379644094.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:48 Heat of formation + Delta-G solvation = -67.275821 kcal Electronic energy + Delta-G solvation = -15412.590009 eV Core-core repulsion = 12628.730066 eV Total energy + Delta-G solvation = -2783.859943 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.31340 -38.13856 -36.42730 -34.77410 -33.74634 -31.21087 -30.31076 -27.53115 -25.65691 -23.74864 -22.10966 -20.13799 -19.22844 -17.87427 -17.35245 -16.49995 -15.74706 -15.51564 -14.93402 -14.38830 -14.15310 -13.73471 -13.64667 -13.45900 -13.20634 -12.64912 -12.22050 -11.80962 -11.60968 -11.40675 -11.28123 -10.98361 -10.41460 -10.18055 -9.91215 -9.46883 -9.12421 -8.45371 -8.13946 -7.93007 -6.37864 -3.78926 2.63721 3.22846 3.28342 3.32748 3.35762 3.94186 4.10973 4.27697 4.32255 4.41309 4.74889 5.05091 5.22300 5.29440 5.31587 5.42539 5.59585 5.72405 5.85061 6.07275 6.29785 6.77360 6.98536 7.05969 7.55409 7.58304 8.09017 8.32140 8.64546 9.20728 9.57739 10.08846 10.79800 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.057402 B = 0.005260 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.666605 B = 5321.782823 C = 5526.634224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.442 3.558 11 O -0.586 6.586 12 C 0.047 3.953 13 N -0.648 5.648 14 C 0.051 3.949 15 H 0.080 0.920 16 C -0.137 4.137 17 C 0.108 3.892 18 N -0.731 5.731 19 C 0.535 3.465 20 O -0.530 6.530 21 H 0.272 0.728 22 H 0.393 0.607 23 H 0.048 0.952 24 H 0.094 0.906 25 H 0.357 0.643 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.304 -16.668 -2.402 16.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.228 3.772 11 O -0.470 6.470 12 C -0.085 4.085 13 N -0.285 5.285 14 C -0.063 4.063 15 H 0.098 0.902 16 C -0.175 4.175 17 C -0.017 4.017 18 N -0.387 5.387 19 C 0.320 3.680 20 O -0.404 6.404 21 H 0.082 0.918 22 H 0.226 0.774 23 H 0.066 0.934 24 H 0.112 0.888 25 H 0.179 0.821 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 2.598 -16.184 -1.462 16.456 hybrid contribution -0.481 0.603 -0.498 0.918 sum 2.117 -15.581 -1.960 15.846 Atomic orbital electron populations 1.69611 1.05948 1.28273 1.50381 1.25272 0.95630 0.99727 0.97282 0.85907 0.78741 0.80440 0.79039 1.19930 1.20976 1.19888 1.19657 0.93339 0.82233 1.47788 0.87957 1.41843 1.09275 1.04553 1.64142 1.19730 0.88308 0.84656 0.84525 1.90510 1.13700 1.87093 1.55728 1.21820 0.94238 0.90476 1.01958 1.59827 1.18599 0.98339 1.51693 1.22239 0.98419 0.91401 0.94239 0.90197 1.22844 0.99613 0.97775 0.97295 1.21978 0.93434 1.00421 0.85824 1.46109 1.33565 1.41623 1.17412 1.20787 0.80016 0.77978 0.89259 1.90735 1.34137 1.58439 1.57115 0.91801 0.77361 0.93397 0.88825 0.82072 0.89509 0.88576 0.90604 0.90549 0.75419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.09 13.05 55.50 0.72 -24.36 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.30 -8.58 9.68 -14.93 -0.14 -8.72 16 8 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 9 N -0.56 -14.76 5.29 -10.96 -0.06 -14.81 16 10 C 0.44 10.82 7.82 -10.98 -0.09 10.73 16 11 O -0.59 -16.13 15.78 5.55 0.09 -16.04 16 12 C 0.05 0.90 6.02 -4.97 -0.03 0.87 16 13 N -0.65 -10.63 5.98 -107.99 -0.65 -11.28 16 14 C 0.05 0.65 3.26 -67.72 -0.22 0.43 16 15 H 0.08 0.98 7.82 -51.93 -0.41 0.57 16 16 C -0.14 -1.13 6.84 -25.10 -0.17 -1.30 16 17 C 0.11 0.86 7.78 -3.12 -0.02 0.84 16 18 N -0.73 -8.01 6.24 -59.20 -0.37 -8.37 16 19 C 0.54 8.08 8.06 -10.86 -0.09 7.99 16 20 O -0.53 -10.32 18.00 5.56 0.10 -10.22 16 21 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 22 H 0.39 9.95 7.90 -40.82 -0.32 9.63 16 23 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 24 H 0.09 1.85 8.12 -51.93 -0.42 1.43 16 25 H 0.36 5.54 7.75 -39.29 -0.30 5.23 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.10 0.70 7.56 -51.93 -0.39 0.31 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.41 3.77 8.96 -40.82 -0.37 3.40 16 LS Contribution 266.25 15.07 4.01 4.01 Total: -1.00 -34.79 266.25 -5.44 -40.23 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -3.41 Total: 13.11 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: -0.86 Total: 11.36 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.35 Total: -58.83 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: 0.19 Total: -26.26 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.79 -5.44 -40.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379644094.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.046 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds