Wall clock time and date at job start Mon Mar 30 2020 03:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99948 * 2 1 4 4 H 1.48501 * 109.47214 * 240.00024 * 3 2 1 5 5 H 1.48505 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47258 * 119.99716 * 3 2 1 7 7 C 1.38952 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00054 * 180.02562 * 7 2 1 9 9 N 1.37092 * 119.99714 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99635 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00269 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99715 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.46656 * 179.97438 * 12 10 9 14 14 C 1.46906 * 110.99573 * 179.97438 * 13 12 10 15 15 H 1.08997 * 110.43611 * 32.45551 * 14 13 12 16 16 C 1.54630 * 110.48360 * 155.00198 * 14 13 12 17 17 C 1.54473 * 101.76450 * 93.88016 * 16 14 13 18 18 N 1.46767 * 105.47618 * 25.41683 * 17 16 14 19 19 C 1.34417 * 111.29968 * 342.97827 * 18 17 16 20 20 O 1.21277 * 124.94483 * 180.45098 * 19 18 17 21 21 H 0.96997 * 119.99955 * 0.02562 * 1 2 3 22 22 H 0.96993 * 120.00778 * 0.02562 * 9 7 2 23 23 H 1.08990 * 109.47142 * 59.99633 * 12 10 9 24 24 H 1.09004 * 109.46726 * 299.99530 * 12 10 9 25 25 H 1.00896 * 111.00219 * 303.95295 * 13 12 10 26 26 H 1.09003 * 110.96285 * 211.99666 * 16 14 13 27 27 H 1.08997 * 110.97145 * 335.72229 * 16 14 13 28 28 H 1.09001 * 110.24591 * 144.41739 * 17 16 14 29 29 H 1.09001 * 110.24874 * 266.41064 * 17 16 14 30 30 H 0.97003 * 124.35078 * 162.98888 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0016 10 6 1.9975 -3.5578 0.0026 11 8 3.2104 -3.5578 0.0022 12 6 1.2439 -4.8630 0.0032 13 7 2.1986 -5.9795 0.0037 14 6 1.4983 -7.2708 0.0049 15 1 0.5591 -7.1950 -0.5429 16 6 2.3942 -8.3728 -0.6067 17 6 3.0635 -8.9690 0.6514 18 7 2.1377 -8.6917 1.7561 19 6 1.2513 -7.7379 1.4225 20 8 0.3807 -7.3129 2.1521 21 1 -0.4850 0.8400 -0.0004 22 1 0.3535 -2.3907 0.0016 23 1 0.6176 -4.9213 -0.8868 24 1 0.6170 -4.9201 0.8931 25 1 2.8335 -5.9127 -0.7776 26 1 1.7935 -9.1227 -1.1215 27 1 3.1376 -7.9432 -1.2782 28 1 3.1985 -10.0441 0.5333 29 1 4.0233 -8.4854 0.8332 30 1 2.1624 -9.1392 2.6163 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379644094.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:48 Heat of formation + Delta-G solvation = -98.096864 kcal Electronic energy + Delta-G solvation = -15413.926510 eV Core-core repulsion = 12628.730066 eV Total energy + Delta-G solvation = -2785.196444 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.36086 -40.06270 -37.58520 -36.26358 -35.59615 -33.28996 -31.35519 -28.75248 -27.23124 -25.47479 -22.89762 -21.20651 -21.10319 -19.93707 -18.41825 -17.91512 -17.11725 -16.87713 -16.57196 -15.98419 -15.78399 -15.30436 -14.82965 -14.67900 -14.43906 -13.98915 -13.56765 -13.38417 -13.28455 -12.86981 -12.44807 -12.39462 -12.20209 -12.10569 -11.51212 -11.08255 -10.37707 -10.05073 -10.03262 -9.46804 -8.47189 -5.97034 1.40025 1.41556 1.48282 1.53917 2.01450 2.29080 2.48465 2.92945 3.19494 3.37275 3.52051 3.62492 4.05171 4.24038 4.29486 4.42646 4.54746 4.58317 4.80505 4.99701 5.12581 5.39386 5.71863 5.87874 6.00163 6.05250 6.35650 6.56945 7.09809 7.28356 7.52659 8.06705 8.70193 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.057402 B = 0.005260 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.666605 B = 5321.782823 C = 5526.634224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.997 3.003 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.337 4.337 8 H 0.082 0.918 9 N -0.572 5.572 10 C 0.440 3.560 11 O -0.619 6.619 12 C 0.064 3.936 13 N -0.662 5.662 14 C 0.047 3.953 15 H 0.088 0.912 16 C -0.125 4.125 17 C 0.103 3.897 18 N -0.718 5.718 19 C 0.519 3.481 20 O -0.588 6.588 21 H 0.278 0.722 22 H 0.395 0.605 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.363 0.637 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 -17.759 -3.361 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.466 4.466 8 H 0.100 0.900 9 N -0.209 5.209 10 C 0.227 3.773 11 O -0.506 6.506 12 C -0.068 4.068 13 N -0.299 5.299 14 C -0.066 4.066 15 H 0.106 0.894 16 C -0.163 4.163 17 C -0.021 4.021 18 N -0.373 5.373 19 C 0.304 3.696 20 O -0.467 6.467 21 H 0.088 0.912 22 H 0.229 0.771 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.185 0.815 26 H 0.135 0.865 27 H 0.128 0.872 28 H 0.134 0.866 29 H 0.093 0.907 30 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 3.200 -17.331 -2.438 17.792 hybrid contribution -0.625 0.840 -0.183 1.063 sum 2.575 -16.491 -2.621 16.896 Atomic orbital electron populations 1.69684 1.07010 1.29476 1.50061 1.26118 0.96553 1.02624 0.96063 0.84932 0.77703 0.76293 0.79045 1.19278 1.19488 1.19808 1.19682 0.92819 0.83900 1.50224 0.89996 1.41940 1.09348 1.04817 1.64811 1.20677 0.88224 0.85923 0.82466 1.90473 1.15428 1.87900 1.56786 1.21582 0.94060 0.88436 1.02749 1.59700 1.18747 0.99068 1.52353 1.22355 0.99765 0.90905 0.93564 0.89409 1.22931 0.99307 0.96528 0.97484 1.22287 0.92367 1.02939 0.84463 1.46195 1.32585 1.39972 1.18535 1.21303 0.79924 0.78434 0.89957 1.90696 1.36685 1.60573 1.58758 0.91230 0.77101 0.90556 0.89810 0.81461 0.86521 0.87207 0.86620 0.90728 0.74603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.22 13.05 21.66 0.28 -50.94 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.34 -19.63 9.68 84.04 0.81 -18.81 16 8 H 0.08 5.02 7.16 -2.91 -0.02 5.00 16 9 N -0.57 -30.72 5.29 -306.97 -1.62 -32.34 16 10 C 0.44 21.84 7.82 87.66 0.69 22.53 16 11 O -0.62 -34.72 15.78 -3.07 -0.05 -34.77 16 12 C 0.06 2.41 6.02 85.56 0.51 2.93 16 13 N -0.66 -21.05 5.98 -495.58 -2.96 -24.01 16 14 C 0.05 1.13 3.26 44.91 0.15 1.28 16 15 H 0.09 1.97 7.82 -2.39 -0.02 1.95 16 16 C -0.12 -1.59 6.84 31.65 0.22 -1.37 16 17 C 0.10 1.28 7.78 86.83 0.68 1.95 16 18 N -0.72 -14.41 6.24 -459.81 -2.87 -17.28 16 19 C 0.52 15.29 8.06 87.90 0.71 16.00 16 20 O -0.59 -23.37 18.00 -3.02 -0.05 -23.43 16 21 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 22 H 0.40 20.44 7.90 -92.71 -0.73 19.71 16 23 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 24 H 0.08 3.37 8.12 -2.38 -0.02 3.35 16 25 H 0.36 10.74 7.75 -89.70 -0.70 10.05 16 26 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.11 1.17 7.56 -2.39 -0.02 1.16 16 28 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.41 7.05 8.96 -92.71 -0.83 6.22 16 Total: -1.00 -77.11 266.25 -2.08 -79.19 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: -1.06 Total: 33.72 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: 4.23 Total: 24.20 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -7.17 Total: -124.56 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: -0.10 Total: -58.19 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -77.11 -2.08 -79.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379644094.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.904 kcal (2) G-P(sol) polarization free energy of solvation -77.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds