Wall clock time and date at job start Mon Mar 30 2020 03:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00083 * 2 1 4 4 H 1.48502 * 109.47128 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46952 * 300.00382 * 3 2 1 6 6 H 1.48505 * 109.46962 * 60.00030 * 3 2 1 7 7 C 1.38954 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99503 * 179.97438 * 7 2 1 9 9 N 1.37088 * 120.00398 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00323 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00034 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.46890 * 179.97438 * 12 10 9 14 14 C 1.46895 * 110.99750 * 179.97438 * 13 12 10 15 15 H 1.09001 * 110.54130 * 327.61339 * 14 13 12 16 16 C 1.54637 * 110.48453 * 205.00379 * 14 13 12 17 17 C 1.54480 * 101.79655 * 216.54243 * 16 14 13 18 18 N 1.46765 * 105.47306 * 25.39729 * 17 16 14 19 19 C 1.34412 * 111.30144 * 342.98128 * 18 17 16 20 20 O 1.21283 * 124.94095 * 180.41269 * 19 18 17 21 21 H 0.96998 * 120.00116 * 359.97438 * 1 2 3 22 22 H 0.97002 * 119.99986 * 359.97438 * 9 7 2 23 23 H 1.08997 * 109.46863 * 59.99597 * 12 10 9 24 24 H 1.08998 * 109.46708 * 299.99560 * 12 10 9 25 25 H 1.00903 * 110.99839 * 56.04736 * 13 12 10 26 26 H 1.09002 * 110.97169 * 98.40514 * 16 14 13 27 27 H 1.09003 * 110.96908 * 334.68049 * 16 14 13 28 28 H 1.09000 * 110.24248 * 144.39497 * 17 16 14 29 29 H 1.08995 * 110.24637 * 266.30774 * 17 16 14 30 30 H 0.97001 * 124.34735 * 162.96479 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 1.4979 -7.2708 0.0039 15 1 0.5581 -7.1957 0.5508 16 6 2.3942 -8.3719 0.6166 17 6 2.0301 -9.5957 -0.2530 18 7 1.5614 -9.0435 -1.5294 19 6 1.2498 -7.7412 -1.4130 20 8 0.8311 -7.0440 -2.3128 21 1 -0.4850 0.8400 0.0004 22 1 0.3534 -2.3907 0.0005 23 1 0.6173 -4.9212 -0.8880 24 1 0.6167 -4.9201 0.8920 25 1 2.8331 -5.9121 0.7840 26 1 2.1385 -8.5462 1.6618 27 1 3.4493 -8.1191 0.5122 28 1 2.9092 -10.2201 -0.4122 29 1 1.2383 -10.1743 0.2227 30 1 1.4863 -9.5529 -2.3515 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379644097.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:51 Heat of formation + Delta-G solvation = -66.326250 kcal Electronic energy + Delta-G solvation = -15374.922651 eV Core-core repulsion = 12591.103885 eV Total energy + Delta-G solvation = -2783.818767 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.29481 -38.11123 -36.34651 -34.89250 -33.73556 -31.18282 -30.27436 -27.58218 -25.56376 -23.70068 -22.19498 -20.00669 -19.18453 -17.83867 -17.38638 -16.73666 -15.92840 -15.10440 -14.87439 -14.43250 -14.21230 -13.73033 -13.57800 -13.44664 -13.36497 -12.58295 -12.18107 -11.84944 -11.60882 -11.41266 -11.19410 -10.99309 -10.29811 -10.16859 -9.89992 -9.46397 -9.17896 -8.39639 -8.07963 -7.90149 -6.35852 -3.76466 2.68290 3.20753 3.28517 3.30826 3.38456 3.97379 4.11595 4.25651 4.32489 4.40059 4.82230 4.96060 5.21008 5.21876 5.30048 5.33889 5.57814 5.72713 5.88461 6.12151 6.34340 6.74163 6.96816 7.12287 7.60673 7.61190 8.12271 8.33870 8.67419 9.23616 9.60711 10.12068 10.82139 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.064549 B = 0.005099 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.673869 B = 5489.888436 C = 5661.130031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.444 3.556 11 O -0.585 6.585 12 C 0.048 3.952 13 N -0.648 5.648 14 C 0.052 3.948 15 H 0.082 0.918 16 C -0.138 4.138 17 C 0.107 3.893 18 N -0.739 5.739 19 C 0.529 3.471 20 O -0.515 6.515 21 H 0.271 0.729 22 H 0.393 0.607 23 H 0.096 0.904 24 H 0.045 0.955 25 H 0.356 0.644 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 -17.983 3.148 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.230 3.770 11 O -0.469 6.469 12 C -0.084 4.084 13 N -0.282 5.282 14 C -0.062 4.062 15 H 0.100 0.900 16 C -0.176 4.176 17 C -0.018 4.018 18 N -0.396 5.396 19 C 0.313 3.687 20 O -0.389 6.389 21 H 0.080 0.920 22 H 0.226 0.774 23 H 0.114 0.886 24 H 0.063 0.937 25 H 0.178 0.822 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 0.728 -17.329 2.104 17.472 hybrid contribution -0.627 0.506 0.553 0.978 sum 0.101 -16.823 2.657 17.032 Atomic orbital electron populations 1.69627 1.05946 1.27995 1.50770 1.25267 0.95630 0.99706 0.97404 0.85795 0.79696 0.81150 0.77655 1.19227 1.20758 1.20807 1.19759 0.93399 0.82228 1.47372 0.87865 1.41852 1.09245 1.04568 1.64355 1.19743 0.88315 0.84673 0.84293 1.90510 1.13745 1.87097 1.55550 1.21820 0.94287 0.90525 1.01786 1.59828 1.18624 0.98433 1.51344 1.22201 0.98273 0.91454 0.94250 0.90024 1.22864 1.01638 0.93404 0.99712 1.21961 0.99628 0.96159 0.84074 1.46140 1.68931 1.11812 1.12755 1.20854 0.75812 0.81489 0.90544 1.90747 1.44626 1.58332 1.45158 0.91960 0.77411 0.88581 0.93691 0.82246 0.89068 0.88698 0.90287 0.91184 0.75383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.28 13.05 55.50 0.72 -24.56 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.57 29.55 -169.99 -5.02 16.54 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.30 -8.60 9.68 -14.94 -0.14 -8.74 16 8 H 0.10 3.11 7.16 -52.49 -0.38 2.74 16 9 N -0.56 -14.98 5.29 -10.96 -0.06 -15.04 16 10 C 0.44 11.08 7.82 -10.98 -0.09 10.99 16 11 O -0.58 -16.46 15.78 5.55 0.09 -16.37 16 12 C 0.05 0.93 5.99 -4.97 -0.03 0.90 16 13 N -0.65 -11.03 5.95 -107.97 -0.64 -11.68 16 14 C 0.05 0.67 3.26 -67.69 -0.22 0.45 16 15 H 0.08 0.94 7.83 -51.93 -0.41 0.54 16 16 C -0.14 -1.14 6.59 -25.09 -0.17 -1.30 16 17 C 0.11 0.72 7.78 -3.12 -0.02 0.70 16 18 N -0.74 -7.54 6.24 -59.18 -0.37 -7.91 16 19 C 0.53 7.92 8.06 -10.84 -0.09 7.83 16 20 O -0.52 -10.28 17.35 5.56 0.10 -10.18 16 21 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 22 H 0.39 10.02 7.90 -40.82 -0.32 9.70 16 23 H 0.10 1.94 7.49 -51.93 -0.39 1.55 16 24 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 25 H 0.36 5.75 8.07 -39.29 -0.32 5.43 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.84 8.04 -51.93 -0.42 0.42 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.41 3.49 8.96 -40.82 -0.37 3.13 16 LS Contribution 265.48 15.07 4.00 4.00 Total: -1.00 -35.63 265.48 -5.45 -41.09 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -3.42 Total: 12.78 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -0.85 Total: 11.31 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.35 Total: -59.18 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: 0.18 Total: -26.55 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -35.63 -5.45 -41.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379644097.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.237 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds