Wall clock time and date at job start Mon Mar 30 2020 03:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00083 * 2 1 4 4 H 1.48502 * 109.47128 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46952 * 300.00382 * 3 2 1 6 6 H 1.48505 * 109.46962 * 60.00030 * 3 2 1 7 7 C 1.38954 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99503 * 179.97438 * 7 2 1 9 9 N 1.37088 * 120.00398 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00323 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00034 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.46890 * 179.97438 * 12 10 9 14 14 C 1.46895 * 110.99750 * 179.97438 * 13 12 10 15 15 H 1.09001 * 110.54130 * 327.61339 * 14 13 12 16 16 C 1.54637 * 110.48453 * 205.00379 * 14 13 12 17 17 C 1.54480 * 101.79655 * 216.54243 * 16 14 13 18 18 N 1.46765 * 105.47306 * 25.39729 * 17 16 14 19 19 C 1.34412 * 111.30144 * 342.98128 * 18 17 16 20 20 O 1.21283 * 124.94095 * 180.41269 * 19 18 17 21 21 H 0.96998 * 120.00116 * 359.97438 * 1 2 3 22 22 H 0.97002 * 119.99986 * 359.97438 * 9 7 2 23 23 H 1.08997 * 109.46863 * 59.99597 * 12 10 9 24 24 H 1.08998 * 109.46708 * 299.99560 * 12 10 9 25 25 H 1.00903 * 110.99839 * 56.04736 * 13 12 10 26 26 H 1.09002 * 110.97169 * 98.40514 * 16 14 13 27 27 H 1.09003 * 110.96908 * 334.68049 * 16 14 13 28 28 H 1.09000 * 110.24248 * 144.39497 * 17 16 14 29 29 H 1.08995 * 110.24637 * 266.30774 * 17 16 14 30 30 H 0.97001 * 124.34735 * 162.96479 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 1.4979 -7.2708 0.0039 15 1 0.5581 -7.1957 0.5508 16 6 2.3942 -8.3719 0.6166 17 6 2.0301 -9.5957 -0.2530 18 7 1.5614 -9.0435 -1.5294 19 6 1.2498 -7.7412 -1.4130 20 8 0.8311 -7.0440 -2.3128 21 1 -0.4850 0.8400 0.0004 22 1 0.3534 -2.3907 0.0005 23 1 0.6173 -4.9212 -0.8880 24 1 0.6167 -4.9201 0.8920 25 1 2.8331 -5.9121 0.7840 26 1 2.1385 -8.5462 1.6618 27 1 3.4493 -8.1191 0.5122 28 1 2.9092 -10.2201 -0.4122 29 1 1.2383 -10.1743 0.2227 30 1 1.4863 -9.5529 -2.3515 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379644097.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:51 Heat of formation + Delta-G solvation = -98.229863 kcal Electronic energy + Delta-G solvation = -15376.306096 eV Core-core repulsion = 12591.103885 eV Total energy + Delta-G solvation = -2785.202211 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.31620 -40.06122 -37.47026 -36.34354 -35.66461 -33.28985 -31.30601 -28.79359 -27.16257 -25.41647 -22.94750 -21.10966 -21.03571 -19.92971 -18.43592 -17.75313 -17.60158 -16.77096 -16.34869 -15.98955 -15.81790 -15.20258 -14.75900 -14.66877 -14.62262 -13.96893 -13.55502 -13.37116 -13.15792 -12.84845 -12.63968 -12.40912 -12.10553 -12.02855 -11.52793 -11.08437 -10.36393 -10.03715 -10.02220 -9.40132 -8.47550 -5.97043 1.36654 1.41474 1.55586 1.57941 2.01901 2.28758 2.44717 2.93971 3.19357 3.38691 3.55203 3.64229 4.13008 4.19003 4.24929 4.40159 4.52395 4.62216 4.81291 5.00861 5.14467 5.39902 5.77789 5.90748 6.02969 6.06480 6.38420 6.57492 7.10322 7.32629 7.52975 8.07587 8.70430 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.064549 B = 0.005099 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.673869 B = 5489.888436 C = 5661.130031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.997 3.003 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.336 4.336 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.439 3.561 11 O -0.621 6.621 12 C 0.066 3.934 13 N -0.668 5.668 14 C 0.048 3.952 15 H 0.099 0.901 16 C -0.128 4.128 17 C 0.105 3.895 18 N -0.725 5.725 19 C 0.512 3.488 20 O -0.581 6.581 21 H 0.278 0.722 22 H 0.396 0.604 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.360 0.640 26 H 0.125 0.875 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.144 -19.331 4.345 19.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.820 3.180 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.465 4.465 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.508 6.508 12 C -0.066 4.066 13 N -0.303 5.303 14 C -0.065 4.065 15 H 0.117 0.883 16 C -0.166 4.166 17 C -0.018 4.018 18 N -0.380 5.380 19 C 0.297 3.703 20 O -0.460 6.460 21 H 0.088 0.912 22 H 0.229 0.771 23 H 0.104 0.896 24 H 0.095 0.905 25 H 0.182 0.818 26 H 0.143 0.857 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 0.698 -18.754 3.329 19.060 hybrid contribution -0.614 0.810 0.183 1.033 sum 0.084 -17.944 3.512 18.285 Atomic orbital electron populations 1.69692 1.06974 1.29334 1.50254 1.26112 0.96573 1.02581 0.96101 0.84815 0.78000 0.76761 0.78383 1.19673 1.19738 1.19219 1.19746 0.92775 0.83950 1.50029 0.90162 1.41939 1.09333 1.04790 1.64906 1.20745 0.88234 0.86044 0.82301 1.90470 1.15612 1.87941 1.56778 1.21579 0.94051 0.88302 1.02700 1.59695 1.19057 0.99530 1.52019 1.22380 0.99892 0.90566 0.93695 0.88316 1.22940 1.00249 0.91780 1.01610 1.22313 1.01744 0.95772 0.81997 1.46194 1.66857 1.10431 1.14555 1.21382 0.75336 0.82683 0.90851 1.90706 1.47883 1.60293 1.47146 0.91232 0.77069 0.89594 0.90472 0.81815 0.85708 0.89343 0.87628 0.88140 0.74532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.51 13.05 21.66 0.28 -51.23 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 1.00 44.12 29.55 68.60 2.03 46.14 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.34 -19.85 9.68 84.04 0.81 -19.04 16 8 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.57 -31.24 5.29 -306.98 -1.62 -32.86 16 10 C 0.44 22.41 7.82 87.66 0.69 23.10 16 11 O -0.62 -36.00 15.78 -3.05 -0.05 -36.05 16 12 C 0.07 2.55 5.99 85.56 0.51 3.06 16 13 N -0.67 -22.39 5.95 -495.51 -2.95 -25.33 16 14 C 0.05 1.14 3.26 44.93 0.15 1.29 16 15 H 0.10 2.02 7.83 -2.39 -0.02 2.00 16 16 C -0.13 -1.65 6.59 31.65 0.21 -1.45 16 17 C 0.11 0.98 7.78 86.83 0.68 1.66 16 18 N -0.72 -13.25 6.24 -459.75 -2.87 -16.12 16 19 C 0.51 15.00 8.06 87.92 0.71 15.71 16 20 O -0.58 -23.86 17.35 -3.04 -0.05 -23.91 16 21 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 22 H 0.40 20.66 7.90 -92.71 -0.73 19.92 16 23 H 0.09 3.54 7.49 -2.39 -0.02 3.52 16 24 H 0.08 2.46 8.08 -2.39 -0.02 2.44 16 25 H 0.36 11.36 8.07 -89.69 -0.72 10.64 16 26 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 1.31 8.04 -2.39 -0.02 1.29 16 28 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.42 6.39 8.96 -92.71 -0.83 5.55 16 Total: -1.00 -80.18 265.48 -2.10 -82.28 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -1.09 Total: 33.07 kcal Atomic # 6 Polarization: 19.79 SS G_CDS: 4.22 Total: 24.01 kcal Atomic # 7 Polarization: -118.38 SS G_CDS: -7.16 Total: -125.54 kcal Atomic # 8 Polarization: -59.86 SS G_CDS: -0.10 Total: -59.97 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -80.18 -2.10 -82.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379644097.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.950 kcal (2) G-P(sol) polarization free energy of solvation -80.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds