Wall clock time and date at job start Mon Mar 30 2020 03:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48501 * 109.46912 * 270.00223 * 3 2 1 5 5 H 1.48500 * 109.47310 * 30.00364 * 3 2 1 6 6 H 1.48497 * 109.47072 * 150.00867 * 3 2 1 7 7 C 1.37873 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00124 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47271 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99931 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99892 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99744 * 180.02562 * 11 10 9 14 14 N 1.46497 * 109.46959 * 180.02562 * 13 11 10 15 15 C 1.47057 * 125.40952 * 90.00267 * 14 13 11 16 16 C 1.54105 * 103.99235 * 179.97438 * 15 14 13 17 17 N 1.47394 * 103.70056 * 0.10684 * 16 15 14 18 18 C 1.33947 * 109.21036 * 359.88525 * 17 16 15 19 19 O 1.21594 * 123.03846 * 180.09410 * 18 17 16 20 20 H 0.97011 * 119.99715 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46816 * 60.00682 * 9 7 2 22 22 H 1.09001 * 109.47364 * 300.00944 * 9 7 2 23 23 H 0.97002 * 120.00215 * 0.02562 * 10 9 7 24 24 H 1.09000 * 109.47267 * 60.00131 * 13 11 10 25 25 H 1.09001 * 109.47569 * 300.00596 * 13 11 10 26 26 H 1.09002 * 110.54831 * 298.59477 * 15 14 13 27 27 H 1.08997 * 110.54826 * 61.25951 * 15 14 13 28 28 H 1.08996 * 110.55034 * 118.66113 * 16 15 14 29 29 H 1.09001 * 110.54910 * 241.47819 * 16 15 14 30 30 H 0.97000 * 125.37712 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6998 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5612 -5.1049 0.0000 13 6 2.7328 -6.0288 0.0006 14 7 2.0003 -7.2975 0.0005 15 6 1.5748 -8.0356 -1.1982 16 6 0.8577 -9.2782 -0.6356 17 7 0.9540 -9.1054 0.8250 18 6 1.6109 -7.9690 1.0920 19 8 1.8337 -7.5822 2.2231 20 1 -0.4850 0.8402 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6245 -2.5570 0.8896 23 1 3.1566 -3.4355 -0.0002 24 1 3.3594 -5.9707 0.8906 25 1 3.3597 -5.9715 -0.8893 26 1 0.8872 -7.4348 -1.7935 27 1 2.4392 -8.3287 -1.7939 28 1 -0.1852 -9.2941 -0.9518 29 1 1.3677 -10.1891 -0.9494 30 1 0.5990 -9.7184 1.4877 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382899791.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:49 Heat of formation + Delta-G solvation = -50.178142 kcal Electronic energy + Delta-G solvation = -15472.968273 eV Core-core repulsion = 12689.849741 eV Total energy + Delta-G solvation = -2783.118532 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.90166 -38.55737 -36.17743 -34.28837 -33.78957 -32.31117 -29.37701 -28.18645 -26.42614 -23.02885 -22.67964 -20.70445 -19.53938 -17.68400 -17.34201 -16.39985 -16.10350 -15.44491 -15.15085 -14.62810 -14.34522 -13.95000 -13.70942 -13.59589 -12.94812 -12.46124 -12.31208 -12.14280 -11.93136 -11.40117 -10.96890 -10.86296 -10.30795 -10.08440 -9.52661 -9.38345 -9.17285 -8.72283 -8.36258 -7.87245 -6.15065 -4.22079 2.54473 3.25405 3.28231 3.31781 3.34525 3.35649 3.86535 4.18724 4.34015 4.40659 4.81505 4.93746 5.21036 5.24466 5.33118 5.46909 5.51935 5.67852 5.92049 6.66312 7.10604 7.32319 7.44441 7.53583 7.56100 7.67926 7.98421 8.61404 8.70214 8.79642 9.10394 9.44478 10.95206 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.063998 B = 0.005056 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.410962 B = 5536.453249 C = 5572.685718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.711 5.711 11 C 0.478 3.522 12 O -0.547 6.547 13 C 0.131 3.869 14 N -0.614 5.614 15 C 0.093 3.907 16 C 0.096 3.904 17 N -0.745 5.745 18 C 0.705 3.295 19 O -0.585 6.585 20 H 0.266 0.734 21 H 0.026 0.974 22 H 0.026 0.974 23 H 0.391 0.609 24 H 0.110 0.890 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.782 -16.911 -4.700 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.361 5.361 11 C 0.261 3.739 12 O -0.425 6.425 13 C 0.005 3.995 14 N -0.351 5.351 15 C -0.031 4.031 16 C -0.029 4.029 17 N -0.407 5.407 18 C 0.406 3.594 19 O -0.463 6.463 20 H 0.075 0.925 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.224 0.776 24 H 0.128 0.872 25 H 0.124 0.876 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 4.947 -16.566 -4.143 17.779 hybrid contribution 0.560 0.798 0.094 0.979 sum 5.506 -15.769 -4.049 17.186 Atomic orbital electron populations 1.69984 1.06149 1.27287 1.48938 1.24959 0.94909 0.99481 0.94697 0.86401 0.79647 0.82609 0.78170 1.20479 1.21018 1.19706 1.21231 0.93289 0.90427 1.53171 0.91823 1.19098 0.88317 0.81925 0.97689 1.46433 1.11156 1.06004 1.72457 1.21012 0.90127 0.84776 0.77994 1.90658 1.16762 1.84781 1.50290 1.21094 0.92963 0.80354 1.05087 1.46509 1.60164 1.22359 1.06075 1.22385 0.99547 0.92061 0.89060 1.22358 1.01633 0.97971 0.80923 1.45084 1.62214 1.25405 1.07978 1.15794 0.78466 0.80608 0.84563 1.90960 1.62625 1.71609 1.21084 0.92461 0.95599 0.95587 0.77649 0.87214 0.87601 0.89681 0.90087 0.90023 0.90150 0.73164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 8 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 9 C 0.25 6.76 5.43 -5.19 -0.03 6.74 16 10 N -0.71 -15.11 5.55 -61.47 -0.34 -15.45 16 11 C 0.48 9.78 7.90 -10.99 -0.09 9.70 16 12 O -0.55 -13.68 16.43 5.56 0.09 -13.59 16 13 C 0.13 1.92 6.48 -5.20 -0.03 1.89 16 14 N -0.61 -9.05 2.44 -180.19 -0.44 -9.49 16 15 C 0.09 0.94 7.67 -3.16 -0.02 0.91 16 16 C 0.10 0.78 8.08 -2.98 -0.02 0.76 16 17 N -0.74 -8.81 6.39 -64.46 -0.41 -9.22 16 18 C 0.71 11.85 8.60 -88.40 -0.76 11.08 16 19 O -0.59 -12.48 17.53 5.28 0.09 -12.39 16 20 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 21 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.39 6.92 8.32 -40.82 -0.34 6.58 16 24 H 0.11 1.55 7.92 -51.93 -0.41 1.14 16 25 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.43 4.14 8.96 -40.82 -0.37 3.78 16 LS Contribution 269.49 15.07 4.06 4.06 Total: -1.00 -37.93 269.49 -6.22 -44.15 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -3.61 Total: 4.11 kcal Atomic # 6 Polarization: 18.94 SS G_CDS: -1.37 Total: 17.56 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.46 Total: -59.88 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: 0.18 Total: -25.98 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -37.93 -6.22 -44.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382899791.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.030 kcal (2) G-P(sol) polarization free energy of solvation -37.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds