Wall clock time and date at job start Mon Mar 30 2020 03:15:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86800 * 120.00070 * 2 1
4 4 H 1.48501 * 109.46912 * 270.00223 * 3 2 1
5 5 H 1.48500 * 109.47310 * 30.00364 * 3 2 1
6 6 H 1.48497 * 109.47072 * 150.00867 * 3 2 1
7 7 C 1.37873 * 119.99788 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00052 * 179.97438 * 7 2 1
9 9 C 1.50700 * 120.00124 * 359.97438 * 7 2 1
10 10 N 1.46500 * 109.47271 * 180.02562 * 9 7 2
11 11 C 1.34780 * 119.99931 * 179.97438 * 10 9 7
12 12 O 1.21281 * 119.99892 * 0.02562 * 11 10 9
13 13 C 1.50697 * 119.99744 * 180.02562 * 11 10 9
14 14 N 1.46497 * 109.46959 * 180.02562 * 13 11 10
15 15 C 1.47057 * 125.40952 * 90.00267 * 14 13 11
16 16 C 1.54105 * 103.99235 * 179.97438 * 15 14 13
17 17 N 1.47394 * 103.70056 * 0.10684 * 16 15 14
18 18 C 1.33947 * 109.21036 * 359.88525 * 17 16 15
19 19 O 1.21594 * 123.03846 * 180.09410 * 18 17 16
20 20 H 0.97011 * 119.99715 * 359.97438 * 1 2 3
21 21 H 1.09003 * 109.46816 * 60.00682 * 9 7 2
22 22 H 1.09001 * 109.47364 * 300.00944 * 9 7 2
23 23 H 0.97002 * 120.00215 * 0.02562 * 10 9 7
24 24 H 1.09000 * 109.47267 * 60.00131 * 13 11 10
25 25 H 1.09001 * 109.47569 * 300.00596 * 13 11 10
26 26 H 1.09002 * 110.54831 * 298.59477 * 15 14 13
27 27 H 1.08997 * 110.54826 * 61.25951 * 15 14 13
28 28 H 1.08996 * 110.55034 * 118.66113 * 16 15 14
29 29 H 1.09001 * 110.54910 * 241.47819 * 16 15 14
30 30 H 0.97000 * 125.37712 * 179.97438 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4467 2.6527 0.7001
6 1 3.5468 1.4401 0.6998
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2509 -2.4991 -0.0005
10 7 2.2029 -3.6127 -0.0005
11 6 1.7536 -4.8834 0.0000
12 8 0.5612 -5.1049 0.0000
13 6 2.7328 -6.0288 0.0006
14 7 2.0003 -7.2975 0.0005
15 6 1.5748 -8.0356 -1.1982
16 6 0.8577 -9.2782 -0.6356
17 7 0.9540 -9.1054 0.8250
18 6 1.6109 -7.9690 1.0920
19 8 1.8337 -7.5822 2.2231
20 1 -0.4850 0.8402 0.0004
21 1 0.6240 -2.5567 -0.8904
22 1 0.6245 -2.5570 0.8896
23 1 3.1566 -3.4355 -0.0002
24 1 3.3594 -5.9707 0.8906
25 1 3.3597 -5.9715 -0.8893
26 1 0.8872 -7.4348 -1.7935
27 1 2.4392 -8.3287 -1.7939
28 1 -0.1852 -9.2941 -0.9518
29 1 1.3677 -10.1891 -0.9494
30 1 0.5990 -9.7184 1.4877
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000382899791.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:15:49
Heat of formation + Delta-G solvation = -50.178142 kcal
Electronic energy + Delta-G solvation = -15472.968273 eV
Core-core repulsion = 12689.849741 eV
Total energy + Delta-G solvation = -2783.118532 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.106 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-40.90166 -38.55737 -36.17743 -34.28837 -33.78957 -32.31117 -29.37701 -28.18645
-26.42614 -23.02885 -22.67964 -20.70445 -19.53938 -17.68400 -17.34201 -16.39985
-16.10350 -15.44491 -15.15085 -14.62810 -14.34522 -13.95000 -13.70942 -13.59589
-12.94812 -12.46124 -12.31208 -12.14280 -11.93136 -11.40117 -10.96890 -10.86296
-10.30795 -10.08440 -9.52661 -9.38345 -9.17285 -8.72283 -8.36258 -7.87245
-6.15065 -4.22079 2.54473 3.25405 3.28231 3.31781 3.34525 3.35649
3.86535 4.18724 4.34015 4.40659 4.81505 4.93746 5.21036 5.24466
5.33118 5.46909 5.51935 5.67852 5.92049 6.66312 7.10604 7.32319
7.44441 7.53583 7.56100 7.67926 7.98421 8.61404 8.70214 8.79642
9.10394 9.44478 10.95206
Molecular weight = 227.11amu
Principal moments of inertia in cm(-1)
A = 0.063998 B = 0.005056 C = 0.005023
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 437.410962 B = 5536.453249 C = 5572.685718
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.886 5.886
2 C 0.063 3.937
3 Si 0.905 3.095
4 H -0.279 1.279
5 H -0.285 1.285
6 H -0.272 1.272
7 C -0.543 4.543
8 H 0.064 0.936
9 C 0.250 3.750
10 N -0.711 5.711
11 C 0.478 3.522
12 O -0.547 6.547
13 C 0.131 3.869
14 N -0.614 5.614
15 C 0.093 3.907
16 C 0.096 3.904
17 N -0.745 5.745
18 C 0.705 3.295
19 O -0.585 6.585
20 H 0.266 0.734
21 H 0.026 0.974
22 H 0.026 0.974
23 H 0.391 0.609
24 H 0.110 0.890
25 H 0.106 0.894
26 H 0.085 0.915
27 H 0.081 0.919
28 H 0.082 0.918
29 H 0.080 0.920
30 H 0.427 0.573
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.782 -16.911 -4.700 18.480
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.524 5.524
2 C -0.140 4.140
3 Si 0.732 3.268
4 H -0.205 1.205
5 H -0.210 1.210
6 H -0.197 1.197
7 C -0.581 4.581
8 H 0.082 0.918
9 C 0.130 3.870
10 N -0.361 5.361
11 C 0.261 3.739
12 O -0.425 6.425
13 C 0.005 3.995
14 N -0.351 5.351
15 C -0.031 4.031
16 C -0.029 4.029
17 N -0.407 5.407
18 C 0.406 3.594
19 O -0.463 6.463
20 H 0.075 0.925
21 H 0.044 0.956
22 H 0.044 0.956
23 H 0.224 0.776
24 H 0.128 0.872
25 H 0.124 0.876
26 H 0.103 0.897
27 H 0.099 0.901
28 H 0.100 0.900
29 H 0.099 0.901
30 H 0.268 0.732
Dipole moment (debyes) X Y Z Total
from point charges 4.947 -16.566 -4.143 17.779
hybrid contribution 0.560 0.798 0.094 0.979
sum 5.506 -15.769 -4.049 17.186
Atomic orbital electron populations
1.69984 1.06149 1.27287 1.48938 1.24959 0.94909 0.99481 0.94697
0.86401 0.79647 0.82609 0.78170 1.20479 1.21018 1.19706 1.21231
0.93289 0.90427 1.53171 0.91823 1.19098 0.88317 0.81925 0.97689
1.46433 1.11156 1.06004 1.72457 1.21012 0.90127 0.84776 0.77994
1.90658 1.16762 1.84781 1.50290 1.21094 0.92963 0.80354 1.05087
1.46509 1.60164 1.22359 1.06075 1.22385 0.99547 0.92061 0.89060
1.22358 1.01633 0.97971 0.80923 1.45084 1.62214 1.25405 1.07978
1.15794 0.78466 0.80608 0.84563 1.90960 1.62625 1.71609 1.21084
0.92461 0.95599 0.95587 0.77649 0.87214 0.87601 0.89681 0.90087
0.90023 0.90150 0.73164
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16
2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16
3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16
4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16
7 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16
8 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16
9 C 0.25 6.76 5.43 -5.19 -0.03 6.74 16
10 N -0.71 -15.11 5.55 -61.47 -0.34 -15.45 16
11 C 0.48 9.78 7.90 -10.99 -0.09 9.70 16
12 O -0.55 -13.68 16.43 5.56 0.09 -13.59 16
13 C 0.13 1.92 6.48 -5.20 -0.03 1.89 16
14 N -0.61 -9.05 2.44 -180.19 -0.44 -9.49 16
15 C 0.09 0.94 7.67 -3.16 -0.02 0.91 16
16 C 0.10 0.78 8.08 -2.98 -0.02 0.76 16
17 N -0.74 -8.81 6.39 -64.46 -0.41 -9.22 16
18 C 0.71 11.85 8.60 -88.40 -0.76 11.08 16
19 O -0.59 -12.48 17.53 5.28 0.09 -12.39 16
20 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16
21 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16
22 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
23 H 0.39 6.92 8.32 -40.82 -0.34 6.58 16
24 H 0.11 1.55 7.92 -51.93 -0.41 1.14 16
25 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16
26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.43 4.14 8.96 -40.82 -0.37 3.78 16
LS Contribution 269.49 15.07 4.06 4.06
Total: -1.00 -37.93 269.49 -6.22 -44.15
By element:
Atomic # 1 Polarization: 7.72 SS G_CDS: -3.61 Total: 4.11 kcal
Atomic # 6 Polarization: 18.94 SS G_CDS: -1.37 Total: 17.56 kcal
Atomic # 7 Polarization: -59.42 SS G_CDS: -0.46 Total: -59.88 kcal
Atomic # 8 Polarization: -26.16 SS G_CDS: 0.18 Total: -25.98 kcal
Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal
Total LS contribution 4.06 Total: 4.06 kcal
Total: -37.93 -6.22 -44.15 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000382899791.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.030 kcal
(2) G-P(sol) polarization free energy of solvation -37.931 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.962 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.178 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds