Wall clock time and date at job start Mon Mar 30 2020 03:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48501 * 109.46912 * 270.00223 * 3 2 1 5 5 H 1.48500 * 109.47310 * 30.00364 * 3 2 1 6 6 H 1.48497 * 109.47072 * 150.00867 * 3 2 1 7 7 C 1.37873 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00124 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47271 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99931 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99892 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99744 * 180.02562 * 11 10 9 14 14 N 1.46497 * 109.46959 * 180.02562 * 13 11 10 15 15 C 1.47057 * 125.40952 * 90.00267 * 14 13 11 16 16 C 1.54105 * 103.99235 * 179.97438 * 15 14 13 17 17 N 1.47394 * 103.70056 * 0.10684 * 16 15 14 18 18 C 1.33947 * 109.21036 * 359.88525 * 17 16 15 19 19 O 1.21594 * 123.03846 * 180.09410 * 18 17 16 20 20 H 0.97011 * 119.99715 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46816 * 60.00682 * 9 7 2 22 22 H 1.09001 * 109.47364 * 300.00944 * 9 7 2 23 23 H 0.97002 * 120.00215 * 0.02562 * 10 9 7 24 24 H 1.09000 * 109.47267 * 60.00131 * 13 11 10 25 25 H 1.09001 * 109.47569 * 300.00596 * 13 11 10 26 26 H 1.09002 * 110.54831 * 298.59477 * 15 14 13 27 27 H 1.08997 * 110.54826 * 61.25951 * 15 14 13 28 28 H 1.08996 * 110.55034 * 118.66113 * 16 15 14 29 29 H 1.09001 * 110.54910 * 241.47819 * 16 15 14 30 30 H 0.97000 * 125.37712 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6998 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 0.0000 12 8 0.5612 -5.1049 0.0000 13 6 2.7328 -6.0288 0.0006 14 7 2.0003 -7.2975 0.0005 15 6 1.5748 -8.0356 -1.1982 16 6 0.8577 -9.2782 -0.6356 17 7 0.9540 -9.1054 0.8250 18 6 1.6109 -7.9690 1.0920 19 8 1.8337 -7.5822 2.2231 20 1 -0.4850 0.8402 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6245 -2.5570 0.8896 23 1 3.1566 -3.4355 -0.0002 24 1 3.3594 -5.9707 0.8906 25 1 3.3597 -5.9715 -0.8893 26 1 0.8872 -7.4348 -1.7935 27 1 2.4392 -8.3287 -1.7939 28 1 -0.1852 -9.2941 -0.9518 29 1 1.3677 -10.1891 -0.9494 30 1 0.5990 -9.7184 1.4877 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382899791.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:49 Heat of formation + Delta-G solvation = -82.667606 kcal Electronic energy + Delta-G solvation = -15474.377122 eV Core-core repulsion = 12689.849741 eV Total energy + Delta-G solvation = -2784.527381 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.01697 -40.25600 -37.41820 -36.18423 -35.00476 -34.34875 -30.59470 -29.58986 -28.06931 -24.72164 -23.81008 -22.15978 -21.07918 -19.14515 -18.65277 -17.87332 -17.42753 -16.89620 -16.87632 -16.27920 -15.88146 -15.15661 -15.00026 -14.73464 -14.59876 -14.12099 -14.01543 -13.18667 -13.11244 -12.93834 -12.81218 -12.67698 -12.23047 -11.49894 -11.43440 -11.11536 -10.80766 -10.33678 -9.85377 -9.49330 -8.29518 -6.46625 1.42943 1.46379 1.48239 1.57897 1.71890 2.06056 2.34944 2.65957 3.05488 3.07526 3.60620 3.95172 3.95989 4.22454 4.36818 4.57102 4.66859 4.97170 5.01688 5.09156 5.21769 5.47309 5.56206 5.70254 5.83676 6.17769 6.49071 6.64578 6.88174 7.22891 7.46925 7.53597 8.82904 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.063998 B = 0.005056 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.410962 B = 5536.453249 C = 5572.685718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.988 3.012 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.555 4.555 8 H 0.087 0.913 9 C 0.267 3.733 10 N -0.704 5.704 11 C 0.472 3.528 12 O -0.599 6.599 13 C 0.143 3.857 14 N -0.620 5.620 15 C 0.085 3.915 16 C 0.097 3.903 17 N -0.735 5.735 18 C 0.688 3.312 19 O -0.645 6.645 20 H 0.268 0.732 21 H -0.010 1.010 22 H -0.022 1.022 23 H 0.411 0.589 24 H 0.117 0.883 25 H 0.162 0.838 26 H 0.072 0.928 27 H 0.124 0.876 28 H 0.092 0.908 29 H 0.124 0.876 30 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.141 -17.687 -6.077 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.593 4.593 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.355 5.355 11 C 0.258 3.742 12 O -0.481 6.481 13 C 0.016 3.984 14 N -0.357 5.357 15 C -0.037 4.037 16 C -0.027 4.027 17 N -0.397 5.397 18 C 0.388 3.612 19 O -0.527 6.527 20 H 0.077 0.923 21 H 0.008 0.992 22 H -0.004 1.004 23 H 0.248 0.752 24 H 0.135 0.865 25 H 0.179 0.821 26 H 0.090 0.910 27 H 0.142 0.858 28 H 0.111 0.889 29 H 0.142 0.858 30 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 7.340 -17.415 -5.574 19.704 hybrid contribution -0.254 0.946 0.489 1.095 sum 7.086 -16.469 -5.085 18.636 Atomic orbital electron populations 1.70155 1.08420 1.28574 1.50084 1.26111 0.95766 1.04071 0.93791 0.85116 0.78416 0.76716 0.78712 1.19268 1.21170 1.17886 1.21640 0.94440 0.90433 1.52805 0.89480 1.18518 0.88759 0.84541 0.93781 1.46157 1.11338 1.05346 1.72678 1.22228 0.90572 0.85607 0.75770 1.90629 1.19598 1.85553 1.52302 1.21177 0.91337 0.77836 1.08029 1.46721 1.59708 1.22058 1.07178 1.22778 1.01244 0.91963 0.87748 1.22703 1.02880 0.98901 0.78178 1.45120 1.60495 1.23908 1.10159 1.16284 0.78864 0.81843 0.84253 1.90901 1.64993 1.73353 1.23477 0.92277 0.99210 1.00418 0.75239 0.86479 0.82058 0.91002 0.85794 0.88939 0.85826 0.72244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.99 42.64 29.54 68.60 2.03 44.67 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 7 C -0.56 -30.57 9.28 25.60 0.24 -30.33 16 8 H 0.09 4.28 7.60 -2.91 -0.02 4.25 16 9 C 0.27 15.04 5.43 85.63 0.46 15.51 16 10 N -0.70 -30.15 5.55 -466.78 -2.59 -32.74 16 11 C 0.47 19.45 7.90 87.66 0.69 20.15 16 12 O -0.60 -31.14 16.43 -3.03 -0.05 -31.19 16 13 C 0.14 3.89 6.48 85.63 0.55 4.44 16 14 N -0.62 -17.21 2.44 -842.72 -2.06 -19.27 16 15 C 0.08 1.44 7.67 86.65 0.66 2.11 16 16 C 0.10 1.26 8.08 86.58 0.70 1.96 16 17 N -0.74 -16.26 6.39 -476.58 -3.04 -19.30 16 18 C 0.69 22.72 8.60 179.57 1.55 24.27 16 19 O -0.64 -28.11 17.53 -4.01 -0.07 -28.18 16 20 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 21 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 22 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 23 H 0.41 14.03 8.32 -92.71 -0.77 13.26 16 24 H 0.12 3.11 7.92 -2.39 -0.02 3.09 16 25 H 0.16 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.44 7.93 8.96 -92.71 -0.83 7.10 16 Total: -1.00 -88.34 269.49 -0.61 -88.95 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -0.43 Total: 15.44 kcal Atomic # 6 Polarization: 33.35 SS G_CDS: 5.32 Total: 38.67 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -7.41 Total: -128.37 kcal Atomic # 8 Polarization: -59.25 SS G_CDS: -0.12 Total: -59.37 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -88.34 -0.61 -88.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382899791.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.284 kcal (2) G-P(sol) polarization free energy of solvation -88.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds