Wall clock time and date at job start Mon Mar 30 2020 03:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 5 5 H 1.08005 * 119.99854 * 239.99900 * 4 2 1 6 6 C 1.37878 * 120.00083 * 59.99957 * 4 2 1 7 7 N 1.31511 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47177 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47276 * 120.00245 * 8 6 4 11 11 H 1.48507 * 109.47088 * 240.00288 * 8 6 4 12 12 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 13 13 C 1.46905 * 110.99870 * 274.99736 * 12 2 1 14 14 C 1.53867 * 113.59614 * 252.61046 * 13 12 2 15 15 C 1.53327 * 86.92992 * 220.35253 * 14 13 12 16 16 C 1.52596 * 120.57427 * 149.65811 * 15 14 13 17 17 S 1.81504 * 89.77067 * 93.93366 * 16 15 14 18 18 C 1.52594 * 120.57246 * 260.66577 * 15 14 13 19 19 C 1.53331 * 87.57516 * 25.16012 * 15 14 13 20 20 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 21 21 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 23 23 H 0.97003 * 119.99872 * 179.97438 * 7 6 4 24 24 H 1.00901 * 111.00067 * 38.94911 * 12 2 1 25 25 H 1.09007 * 112.83649 * 23.85829 * 13 12 2 26 26 H 1.08997 * 113.63900 * 334.85796 * 14 13 12 27 27 H 1.09000 * 113.63816 * 105.84169 * 14 13 12 28 28 H 1.09005 * 113.16682 * 209.15561 * 16 15 14 29 29 H 1.09002 * 113.16376 * 338.70946 * 16 15 14 30 30 H 1.09002 * 113.16434 * 21.29064 * 18 15 14 31 31 H 1.09000 * 113.17232 * 150.77957 * 18 15 14 32 32 H 1.09000 * 113.63401 * 220.33499 * 19 15 14 33 33 H 1.08998 * 113.72167 * 89.36144 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1659 -1.5866 -4.8160 11 1 3.1466 -0.1874 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 3.5162 0.6176 2.7419 15 6 3.0632 0.4833 4.2005 16 6 4.0512 0.0620 5.2845 17 16 4.3777 1.8085 5.6554 18 6 2.6831 1.7185 5.0120 19 6 1.9845 -0.4886 3.7079 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 0.7095 1.1619 -3.4844 24 1 1.4495 -1.4979 1.4100 25 1 1.4060 1.0716 2.2485 26 1 4.2679 -0.1151 2.4486 27 1 3.7826 1.6360 2.4589 28 1 3.5801 -0.4709 6.1104 29 1 4.9217 -0.4627 4.8907 30 1 2.4141 2.5732 4.3914 31 1 1.9409 1.5131 5.7834 32 1 1.0209 -0.3583 4.2006 33 1 2.3099 -1.5285 3.6821 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642818187.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:59 Heat of formation + Delta-G solvation = 39.579377 kcal Electronic energy + Delta-G solvation = -13870.598453 eV Core-core repulsion = 11637.665314 eV Total energy + Delta-G solvation = -2232.933140 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.64767 -35.48893 -32.81245 -30.92500 -27.25519 -26.42449 -25.57188 -25.10270 -21.32184 -20.00835 -18.22664 -16.46590 -16.26988 -15.41852 -15.09523 -14.60730 -14.59130 -13.40242 -13.12822 -13.01794 -12.48526 -12.18625 -11.94828 -11.57809 -11.32393 -11.01703 -10.93616 -10.80377 -10.65074 -10.32664 -10.17990 -10.12318 -9.81822 -9.58940 -8.92733 -8.35751 -7.78771 -7.26785 -5.97815 -4.00802 1.79836 1.93171 3.32227 3.40100 3.45215 4.21764 4.43442 4.45585 4.88392 4.94882 5.20089 5.22765 5.33959 5.39648 5.40905 5.60484 5.64213 5.78767 5.92616 6.09604 6.37679 6.53368 6.62053 6.69777 6.83179 7.10820 7.39435 7.74414 7.90758 8.29537 8.54343 8.63255 9.06889 9.64728 11.09371 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.052752 B = 0.005504 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.655611 B = 5086.099646 C = 5209.092422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.209 3.791 3 H 0.034 0.966 4 C -0.493 4.493 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.671 5.671 13 C 0.068 3.932 14 C -0.090 4.090 15 C -0.094 4.094 16 C -0.063 4.063 17 S -0.308 6.308 18 C -0.055 4.055 19 C -0.122 4.122 20 H 0.088 0.912 21 H 0.027 0.973 22 H 0.004 0.996 23 H 0.259 0.741 24 H 0.327 0.673 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 -1.016 13.791 13.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.052 0.948 4 C -0.532 4.532 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.301 5.301 13 C -0.044 4.044 14 C -0.128 4.128 15 C -0.096 4.096 16 C -0.211 4.211 17 S -0.081 6.081 18 C -0.204 4.204 19 C -0.163 4.163 20 H 0.107 0.893 21 H 0.046 0.954 22 H 0.023 0.977 23 H 0.068 0.932 24 H 0.144 0.856 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.214 0.118 14.001 14.366 hybrid contribution -1.489 -0.890 -0.941 1.973 sum 1.725 -0.771 13.060 13.196 Atomic orbital electron populations 1.22446 1.00786 0.99141 1.00421 1.19229 0.89491 0.94434 0.86676 0.94839 1.21195 1.30037 1.12364 0.89625 0.91926 1.24954 0.95365 0.95210 0.99065 1.69892 1.37469 1.23243 1.23203 0.86470 0.78493 0.79674 0.82921 1.19743 1.21248 1.21165 1.60898 1.57570 1.08569 1.03051 1.22821 0.96028 0.95968 0.89545 1.22861 0.98581 1.02216 0.89167 1.22467 0.96871 0.94892 0.95377 1.24248 1.01898 0.94415 1.00535 1.88864 1.19747 1.11591 1.87918 1.24088 0.94641 1.00956 1.00682 1.23170 0.97183 0.98853 0.97074 0.89345 0.95369 0.97718 0.93159 0.85563 0.91742 0.88609 0.91433 0.88121 0.88586 0.88531 0.87917 0.91610 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 8.93 37.16 0.33 -3.63 16 2 C 0.21 5.13 2.43 -68.87 -0.17 4.96 16 3 H 0.03 0.91 7.84 -51.93 -0.41 0.51 16 4 C -0.49 -13.47 8.84 -34.44 -0.30 -13.78 16 5 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.40 16 7 N -0.90 -25.59 11.32 55.43 0.63 -24.96 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.67 -13.46 6.29 -100.00 -0.63 -14.09 16 13 C 0.07 1.11 3.84 -66.81 -0.26 0.85 16 14 C -0.09 -1.36 7.58 -26.11 -0.20 -1.56 16 15 C -0.09 -1.14 0.93 -154.58 -0.14 -1.29 16 16 C -0.06 -0.69 7.69 36.95 0.28 -0.41 16 17 S -0.31 -4.01 24.79 -107.50 -2.66 -6.68 16 18 C -0.06 -0.64 7.69 36.95 0.28 -0.35 16 19 C -0.12 -1.53 7.36 -26.11 -0.19 -1.72 16 20 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 21 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 22 H 0.00 0.08 7.74 -51.92 -0.40 -0.32 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.33 6.18 8.29 -39.29 -0.33 5.85 16 25 H 0.06 1.14 7.49 -51.93 -0.39 0.75 16 26 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 280.66 15.07 4.23 4.23 Total: -1.00 -28.16 280.66 -9.10 -37.27 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.19 Total: 3.39 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -0.46 Total: -15.52 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.00 Total: -39.06 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -4.01 SS G_CDS: -2.66 Total: -6.68 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.16 -9.10 -37.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642818187.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.845 kcal (2) G-P(sol) polarization free energy of solvation -28.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds