Wall clock time and date at job start Mon Mar 30 2020 03:44:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09000 * 109.46837 * 2 1
4 4 C 1.50693 * 109.46915 * 240.00078 * 2 1 3
5 5 H 1.08005 * 119.99854 * 239.99900 * 4 2 1
6 6 C 1.37878 * 120.00083 * 59.99957 * 4 2 1
7 7 N 1.31511 * 119.99935 * 0.02562 * 6 4 2
8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2
9 9 H 1.48508 * 109.47177 * 359.97438 * 8 6 4
10 10 H 1.48498 * 109.47276 * 120.00245 * 8 6 4
11 11 H 1.48507 * 109.47088 * 240.00288 * 8 6 4
12 12 N 1.46901 * 109.47021 * 120.00193 * 2 1 3
13 13 C 1.46905 * 110.99870 * 274.99736 * 12 2 1
14 14 C 1.53867 * 113.59614 * 252.61046 * 13 12 2
15 15 C 1.53327 * 86.92992 * 220.35253 * 14 13 12
16 16 C 1.52596 * 120.57427 * 149.65811 * 15 14 13
17 17 S 1.81504 * 89.77067 * 93.93366 * 16 15 14
18 18 C 1.52594 * 120.57246 * 260.66577 * 15 14 13
19 19 C 1.53331 * 87.57516 * 25.16012 * 15 14 13
20 20 H 1.08993 * 109.47190 * 59.99909 * 1 2 3
21 21 H 1.08996 * 109.47234 * 180.02562 * 1 2 3
22 22 H 1.09007 * 109.47106 * 300.00284 * 1 2 3
23 23 H 0.97003 * 119.99872 * 179.97438 * 7 6 4
24 24 H 1.00901 * 111.00067 * 38.94911 * 12 2 1
25 25 H 1.09007 * 112.83649 * 23.85829 * 13 12 2
26 26 H 1.08997 * 113.63900 * 334.85796 * 14 13 12
27 27 H 1.09000 * 113.63816 * 105.84169 * 14 13 12
28 28 H 1.09005 * 113.16682 * 209.15561 * 16 15 14
29 29 H 1.09002 * 113.16376 * 338.70946 * 16 15 14
30 30 H 1.09002 * 113.16434 * 21.29064 * 18 15 14
31 31 H 1.09000 * 113.17232 * 150.77957 * 18 15 14
32 32 H 1.09000 * 113.63401 * 220.33499 * 19 15 14
33 33 H 1.08998 * 113.72167 * 89.36144 * 19 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2304
5 1 2.6532 -1.5885 -1.1313
6 6 1.6992 -0.2393 -2.4827
7 7 0.9435 0.8303 -2.6033
8 14 2.3212 -1.1203 -4.0079
9 1 3.1464 -2.2871 -3.6037
10 1 1.1659 -1.5866 -4.8160
11 1 3.1466 -0.1874 -4.8165
12 7 2.0197 -0.6925 1.1994
13 6 2.0825 0.2226 2.3469
14 6 3.5162 0.6176 2.7419
15 6 3.0632 0.4833 4.2005
16 6 4.0512 0.0620 5.2845
17 16 4.3777 1.8085 5.6554
18 6 2.6831 1.7185 5.0120
19 6 1.9845 -0.4886 3.7079
20 1 -0.3633 0.5138 -0.8899
21 1 -0.3633 -1.0276 0.0005
22 1 -0.3634 0.5139 0.8900
23 1 0.7095 1.1619 -3.4844
24 1 1.4495 -1.4979 1.4100
25 1 1.4060 1.0716 2.2485
26 1 4.2679 -0.1151 2.4486
27 1 3.7826 1.6360 2.4589
28 1 3.5801 -0.4709 6.1104
29 1 4.9217 -0.4627 4.8907
30 1 2.4141 2.5732 4.3914
31 1 1.9409 1.5131 5.7834
32 1 1.0209 -0.3583 4.2006
33 1 2.3099 -1.5285 3.6821
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000642818187.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:44:59
Heat of formation + Delta-G solvation = 39.579377 kcal
Electronic energy + Delta-G solvation = -13870.598453 eV
Core-core repulsion = 11637.665314 eV
Total energy + Delta-G solvation = -2232.933140 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 227.104 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-39.64767 -35.48893 -32.81245 -30.92500 -27.25519 -26.42449 -25.57188 -25.10270
-21.32184 -20.00835 -18.22664 -16.46590 -16.26988 -15.41852 -15.09523 -14.60730
-14.59130 -13.40242 -13.12822 -13.01794 -12.48526 -12.18625 -11.94828 -11.57809
-11.32393 -11.01703 -10.93616 -10.80377 -10.65074 -10.32664 -10.17990 -10.12318
-9.81822 -9.58940 -8.92733 -8.35751 -7.78771 -7.26785 -5.97815 -4.00802
1.79836 1.93171 3.32227 3.40100 3.45215 4.21764 4.43442 4.45585
4.88392 4.94882 5.20089 5.22765 5.33959 5.39648 5.40905 5.60484
5.64213 5.78767 5.92616 6.09604 6.37679 6.53368 6.62053 6.69777
6.83179 7.10820 7.39435 7.74414 7.90758 8.29537 8.54343 8.63255
9.06889 9.64728 11.09371
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.052752 B = 0.005504 C = 0.005374
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 530.655611 B = 5086.099646 C = 5209.092422
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.209 3.791
3 H 0.034 0.966
4 C -0.493 4.493
5 H 0.063 0.937
6 C 0.054 3.946
7 N -0.898 5.898
8 Si 0.896 3.104
9 H -0.273 1.273
10 H -0.286 1.286
11 H -0.285 1.285
12 N -0.671 5.671
13 C 0.068 3.932
14 C -0.090 4.090
15 C -0.094 4.094
16 C -0.063 4.063
17 S -0.308 6.308
18 C -0.055 4.055
19 C -0.122 4.122
20 H 0.088 0.912
21 H 0.027 0.973
22 H 0.004 0.996
23 H 0.259 0.741
24 H 0.327 0.673
25 H 0.065 0.935
26 H 0.095 0.905
27 H 0.067 0.933
28 H 0.100 0.900
29 H 0.095 0.905
30 H 0.096 0.904
31 H 0.102 0.898
32 H 0.065 0.935
33 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.589 -1.016 13.791 13.919
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.102 3.898
3 H 0.052 0.948
4 C -0.532 4.532
5 H 0.081 0.919
6 C -0.146 4.146
7 N -0.538 5.538
8 Si 0.724 3.276
9 H -0.197 1.197
10 H -0.212 1.212
11 H -0.212 1.212
12 N -0.301 5.301
13 C -0.044 4.044
14 C -0.128 4.128
15 C -0.096 4.096
16 C -0.211 4.211
17 S -0.081 6.081
18 C -0.204 4.204
19 C -0.163 4.163
20 H 0.107 0.893
21 H 0.046 0.954
22 H 0.023 0.977
23 H 0.068 0.932
24 H 0.144 0.856
25 H 0.083 0.917
26 H 0.114 0.886
27 H 0.086 0.914
28 H 0.119 0.881
29 H 0.114 0.886
30 H 0.115 0.885
31 H 0.121 0.879
32 H 0.084 0.916
33 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 3.214 0.118 14.001 14.366
hybrid contribution -1.489 -0.890 -0.941 1.973
sum 1.725 -0.771 13.060 13.196
Atomic orbital electron populations
1.22446 1.00786 0.99141 1.00421 1.19229 0.89491 0.94434 0.86676
0.94839 1.21195 1.30037 1.12364 0.89625 0.91926 1.24954 0.95365
0.95210 0.99065 1.69892 1.37469 1.23243 1.23203 0.86470 0.78493
0.79674 0.82921 1.19743 1.21248 1.21165 1.60898 1.57570 1.08569
1.03051 1.22821 0.96028 0.95968 0.89545 1.22861 0.98581 1.02216
0.89167 1.22467 0.96871 0.94892 0.95377 1.24248 1.01898 0.94415
1.00535 1.88864 1.19747 1.11591 1.87918 1.24088 0.94641 1.00956
1.00682 1.23170 0.97183 0.98853 0.97074 0.89345 0.95369 0.97718
0.93159 0.85563 0.91742 0.88609 0.91433 0.88121 0.88586 0.88531
0.87917 0.91610 0.88826
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.96 8.93 37.16 0.33 -3.63 16
2 C 0.21 5.13 2.43 -68.87 -0.17 4.96 16
3 H 0.03 0.91 7.84 -51.93 -0.41 0.51 16
4 C -0.49 -13.47 8.84 -34.44 -0.30 -13.78 16
5 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16
6 C 0.05 1.50 5.30 -17.82 -0.09 1.40 16
7 N -0.90 -25.59 11.32 55.43 0.63 -24.96 16
8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16
9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16
11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
12 N -0.67 -13.46 6.29 -100.00 -0.63 -14.09 16
13 C 0.07 1.11 3.84 -66.81 -0.26 0.85 16
14 C -0.09 -1.36 7.58 -26.11 -0.20 -1.56 16
15 C -0.09 -1.14 0.93 -154.58 -0.14 -1.29 16
16 C -0.06 -0.69 7.69 36.95 0.28 -0.41 16
17 S -0.31 -4.01 24.79 -107.50 -2.66 -6.68 16
18 C -0.06 -0.64 7.69 36.95 0.28 -0.35 16
19 C -0.12 -1.53 7.36 -26.11 -0.19 -1.72 16
20 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16
21 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16
22 H 0.00 0.08 7.74 -51.92 -0.40 -0.32 16
23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16
24 H 0.33 6.18 8.29 -39.29 -0.33 5.85 16
25 H 0.06 1.14 7.49 -51.93 -0.39 0.75 16
26 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16
27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16
28 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16
29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16
30 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16
31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16
32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16
LS Contribution 280.66 15.07 4.23 4.23
Total: -1.00 -28.16 280.66 -9.10 -37.27
By element:
Atomic # 1 Polarization: 8.58 SS G_CDS: -5.19 Total: 3.39 kcal
Atomic # 6 Polarization: -15.06 SS G_CDS: -0.46 Total: -15.52 kcal
Atomic # 7 Polarization: -39.06 SS G_CDS: 0.00 Total: -39.06 kcal
Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal
Atomic # 16 Polarization: -4.01 SS G_CDS: -2.66 Total: -6.68 kcal
Total LS contribution 4.23 Total: 4.23 kcal
Total: -28.16 -9.10 -37.27 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000642818187.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.845 kcal
(2) G-P(sol) polarization free energy of solvation -28.164 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.681 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.579 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds