Wall clock time and date at job start Mon Mar 30 2020 03:44:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09000 * 109.46837 * 2 1
4 4 C 1.50693 * 109.46915 * 240.00078 * 2 1 3
5 5 H 1.08005 * 119.99854 * 239.99900 * 4 2 1
6 6 C 1.37878 * 120.00083 * 59.99957 * 4 2 1
7 7 N 1.31511 * 119.99935 * 0.02562 * 6 4 2
8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2
9 9 H 1.48508 * 109.47177 * 359.97438 * 8 6 4
10 10 H 1.48498 * 109.47276 * 120.00245 * 8 6 4
11 11 H 1.48507 * 109.47088 * 240.00288 * 8 6 4
12 12 N 1.46901 * 109.47021 * 120.00193 * 2 1 3
13 13 C 1.46905 * 110.99870 * 274.99736 * 12 2 1
14 14 C 1.53867 * 113.59614 * 252.61046 * 13 12 2
15 15 C 1.53327 * 86.92992 * 220.35253 * 14 13 12
16 16 C 1.52596 * 120.57427 * 149.65811 * 15 14 13
17 17 S 1.81504 * 89.77067 * 93.93366 * 16 15 14
18 18 C 1.52594 * 120.57246 * 260.66577 * 15 14 13
19 19 C 1.53331 * 87.57516 * 25.16012 * 15 14 13
20 20 H 1.08993 * 109.47190 * 59.99909 * 1 2 3
21 21 H 1.08996 * 109.47234 * 180.02562 * 1 2 3
22 22 H 1.09007 * 109.47106 * 300.00284 * 1 2 3
23 23 H 0.97003 * 119.99872 * 179.97438 * 7 6 4
24 24 H 1.00901 * 111.00067 * 38.94911 * 12 2 1
25 25 H 1.09007 * 112.83649 * 23.85829 * 13 12 2
26 26 H 1.08997 * 113.63900 * 334.85796 * 14 13 12
27 27 H 1.09000 * 113.63816 * 105.84169 * 14 13 12
28 28 H 1.09005 * 113.16682 * 209.15561 * 16 15 14
29 29 H 1.09002 * 113.16376 * 338.70946 * 16 15 14
30 30 H 1.09002 * 113.16434 * 21.29064 * 18 15 14
31 31 H 1.09000 * 113.17232 * 150.77957 * 18 15 14
32 32 H 1.09000 * 113.63401 * 220.33499 * 19 15 14
33 33 H 1.08998 * 113.72167 * 89.36144 * 19 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2304
5 1 2.6532 -1.5885 -1.1313
6 6 1.6992 -0.2393 -2.4827
7 7 0.9435 0.8303 -2.6033
8 14 2.3212 -1.1203 -4.0079
9 1 3.1464 -2.2871 -3.6037
10 1 1.1659 -1.5866 -4.8160
11 1 3.1466 -0.1874 -4.8165
12 7 2.0197 -0.6925 1.1994
13 6 2.0825 0.2226 2.3469
14 6 3.5162 0.6176 2.7419
15 6 3.0632 0.4833 4.2005
16 6 4.0512 0.0620 5.2845
17 16 4.3777 1.8085 5.6554
18 6 2.6831 1.7185 5.0120
19 6 1.9845 -0.4886 3.7079
20 1 -0.3633 0.5138 -0.8899
21 1 -0.3633 -1.0276 0.0005
22 1 -0.3634 0.5139 0.8900
23 1 0.7095 1.1619 -3.4844
24 1 1.4495 -1.4979 1.4100
25 1 1.4060 1.0716 2.2485
26 1 4.2679 -0.1151 2.4486
27 1 3.7826 1.6360 2.4589
28 1 3.5801 -0.4709 6.1104
29 1 4.9217 -0.4627 4.8907
30 1 2.4141 2.5732 4.3914
31 1 1.9409 1.5131 5.7834
32 1 1.0209 -0.3583 4.2006
33 1 2.3099 -1.5285 3.6821
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000642818187.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:44:59
Heat of formation + Delta-G solvation = 22.697769 kcal
Electronic energy + Delta-G solvation = -13871.330495 eV
Core-core repulsion = 11637.665314 eV
Total energy + Delta-G solvation = -2233.665181 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 227.104 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-40.79759 -37.18768 -34.51588 -32.49191 -28.95802 -27.32748 -27.20781 -26.67054
-22.84119 -21.72447 -19.33564 -18.26768 -17.43016 -16.87752 -16.57416 -16.07127
-15.76534 -15.05461 -14.44968 -14.29896 -13.96344 -13.63878 -13.27077 -13.07155
-12.86864 -12.83042 -12.43454 -12.22474 -12.17534 -12.08463 -11.93929 -11.43270
-11.13632 -10.97643 -10.65354 -10.46850 -8.90877 -8.80034 -8.07541 -6.18181
0.89136 0.98514 1.42919 1.45109 1.57013 2.45939 3.20407 3.22168
3.42074 3.74419 3.83871 4.00973 4.09997 4.41841 4.47175 4.51229
4.69906 4.71456 4.77940 4.91023 4.92648 4.98530 5.10936 5.14602
5.30785 5.39361 5.54165 5.73203 5.90138 6.32941 6.71728 6.92189
7.01352 7.52336 8.98145
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.052752 B = 0.005504 C = 0.005374
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 530.655611 B = 5086.099646 C = 5209.092422
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.216 3.784
3 H -0.003 1.003
4 C -0.511 4.511
5 H 0.055 0.945
6 C 0.007 3.993
7 N -0.925 5.925
8 Si 0.959 3.041
9 H -0.268 1.268
10 H -0.280 1.280
11 H -0.284 1.284
12 N -0.674 5.674
13 C 0.053 3.947
14 C -0.096 4.096
15 C -0.083 4.083
16 C -0.044 4.044
17 S -0.363 6.363
18 C -0.043 4.043
19 C -0.100 4.100
20 H 0.057 0.943
21 H 0.034 0.966
22 H 0.026 0.974
23 H 0.259 0.741
24 H 0.335 0.665
25 H 0.051 0.949
26 H 0.087 0.913
27 H 0.049 0.951
28 H 0.130 0.870
29 H 0.098 0.902
30 H 0.089 0.911
31 H 0.131 0.869
32 H 0.088 0.912
33 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.292 -2.378 15.075 15.316
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.107 3.893
3 H 0.015 0.985
4 C -0.550 4.550
5 H 0.073 0.927
6 C -0.191 4.191
7 N -0.565 5.565
8 Si 0.785 3.215
9 H -0.192 1.192
10 H -0.206 1.206
11 H -0.210 1.210
12 N -0.304 5.304
13 C -0.057 4.057
14 C -0.134 4.134
15 C -0.085 4.085
16 C -0.192 4.192
17 S -0.137 6.137
18 C -0.191 4.191
19 C -0.140 4.140
20 H 0.076 0.924
21 H 0.053 0.947
22 H 0.045 0.955
23 H 0.069 0.931
24 H 0.153 0.847
25 H 0.069 0.931
26 H 0.106 0.894
27 H 0.068 0.932
28 H 0.148 0.852
29 H 0.117 0.883
30 H 0.108 0.892
31 H 0.149 0.851
32 H 0.107 0.893
33 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 2.922 -1.250 15.306 15.632
hybrid contribution -1.381 -0.432 -1.327 1.963
sum 1.541 -1.682 13.978 14.163
Atomic orbital electron populations
1.22243 0.99993 0.99300 0.99954 1.18944 0.89953 0.92485 0.87940
0.98507 1.21516 1.30053 1.12311 0.91124 0.92660 1.25719 0.95566
0.95899 1.01936 1.70022 1.38322 1.24382 1.23799 0.85494 0.78041
0.78616 0.79365 1.19194 1.20619 1.21049 1.60745 1.57327 1.09200
1.03080 1.22943 0.96628 0.95753 0.90408 1.22812 0.97685 1.00908
0.91996 1.22240 0.96930 0.95409 0.93900 1.24287 1.01621 0.92714
1.00557 1.89161 1.21893 1.14496 1.88138 1.24166 0.93840 1.00245
1.00846 1.23055 0.98372 0.98957 0.93612 0.92370 0.94725 0.95528
0.93140 0.84700 0.93118 0.89445 0.93182 0.85228 0.88321 0.89210
0.85091 0.89316 0.87694
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -7.30 8.93 71.98 0.64 -6.65 16
2 C 0.22 10.71 2.43 44.17 0.11 10.81 16
3 H 0.00 -0.17 7.84 -2.39 -0.02 -0.19 16
4 C -0.51 -28.19 8.84 25.60 0.23 -27.96 16
5 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16
6 C 0.01 0.36 5.30 84.66 0.45 0.81 16
7 N -0.92 -53.51 11.32 21.45 0.24 -53.27 16
8 Si 0.96 43.99 29.54 68.60 2.03 46.01 16
9 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16
10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16
12 N -0.67 -26.67 6.29 -470.30 -2.96 -29.63 16
13 C 0.05 1.70 3.84 45.50 0.17 1.88 16
14 C -0.10 -2.86 7.58 31.00 0.24 -2.62 16
15 C -0.08 -1.81 0.93 -52.23 -0.05 -1.86 16
16 C -0.04 -0.84 7.69 71.85 0.55 -0.28 16
17 S -0.36 -8.95 24.79 -56.49 -1.40 -10.35 16
18 C -0.04 -0.89 7.69 71.85 0.55 -0.33 16
19 C -0.10 -2.16 7.36 31.00 0.23 -1.93 16
20 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16
21 H 0.03 1.53 8.13 -2.39 -0.02 1.51 16
22 H 0.03 1.08 7.74 -2.38 -0.02 1.06 16
23 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16
24 H 0.33 12.17 8.29 -89.69 -0.74 11.43 16
25 H 0.05 1.77 7.49 -2.38 -0.02 1.75 16
26 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16
27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16
28 H 0.13 1.81 8.14 -2.38 -0.02 1.79 16
29 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16
30 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16
31 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16
32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16
33 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16
Total: -1.00 -61.21 280.66 1.37 -59.84
By element:
Atomic # 1 Polarization: 15.21 SS G_CDS: 0.34 Total: 15.55 kcal
Atomic # 6 Polarization: -31.27 SS G_CDS: 3.12 Total: -28.15 kcal
Atomic # 7 Polarization: -80.18 SS G_CDS: -2.72 Total: -82.90 kcal
Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal
Atomic # 16 Polarization: -8.95 SS G_CDS: -1.40 Total: -10.35 kcal
Total: -61.21 1.37 -59.84 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000642818187.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.536 kcal
(2) G-P(sol) polarization free energy of solvation -61.208 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.328 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.838 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.698 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds