Wall clock time and date at job start Mon Mar 30 2020 03:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 5 5 H 1.08005 * 119.99854 * 239.99900 * 4 2 1 6 6 C 1.37878 * 120.00083 * 59.99957 * 4 2 1 7 7 N 1.31511 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47177 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47276 * 120.00245 * 8 6 4 11 11 H 1.48507 * 109.47088 * 240.00288 * 8 6 4 12 12 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 13 13 C 1.46905 * 110.99870 * 274.99736 * 12 2 1 14 14 C 1.53867 * 113.59614 * 252.61046 * 13 12 2 15 15 C 1.53327 * 86.92992 * 220.35253 * 14 13 12 16 16 C 1.52596 * 120.57427 * 149.65811 * 15 14 13 17 17 S 1.81504 * 89.77067 * 93.93366 * 16 15 14 18 18 C 1.52594 * 120.57246 * 260.66577 * 15 14 13 19 19 C 1.53331 * 87.57516 * 25.16012 * 15 14 13 20 20 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 21 21 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 23 23 H 0.97003 * 119.99872 * 179.97438 * 7 6 4 24 24 H 1.00901 * 111.00067 * 38.94911 * 12 2 1 25 25 H 1.09007 * 112.83649 * 23.85829 * 13 12 2 26 26 H 1.08997 * 113.63900 * 334.85796 * 14 13 12 27 27 H 1.09000 * 113.63816 * 105.84169 * 14 13 12 28 28 H 1.09005 * 113.16682 * 209.15561 * 16 15 14 29 29 H 1.09002 * 113.16376 * 338.70946 * 16 15 14 30 30 H 1.09002 * 113.16434 * 21.29064 * 18 15 14 31 31 H 1.09000 * 113.17232 * 150.77957 * 18 15 14 32 32 H 1.09000 * 113.63401 * 220.33499 * 19 15 14 33 33 H 1.08998 * 113.72167 * 89.36144 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1659 -1.5866 -4.8160 11 1 3.1466 -0.1874 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 3.5162 0.6176 2.7419 15 6 3.0632 0.4833 4.2005 16 6 4.0512 0.0620 5.2845 17 16 4.3777 1.8085 5.6554 18 6 2.6831 1.7185 5.0120 19 6 1.9845 -0.4886 3.7079 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 0.7095 1.1619 -3.4844 24 1 1.4495 -1.4979 1.4100 25 1 1.4060 1.0716 2.2485 26 1 4.2679 -0.1151 2.4486 27 1 3.7826 1.6360 2.4589 28 1 3.5801 -0.4709 6.1104 29 1 4.9217 -0.4627 4.8907 30 1 2.4141 2.5732 4.3914 31 1 1.9409 1.5131 5.7834 32 1 1.0209 -0.3583 4.2006 33 1 2.3099 -1.5285 3.6821 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642818187.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:59 Heat of formation + Delta-G solvation = 22.697769 kcal Electronic energy + Delta-G solvation = -13871.330495 eV Core-core repulsion = 11637.665314 eV Total energy + Delta-G solvation = -2233.665181 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.79759 -37.18768 -34.51588 -32.49191 -28.95802 -27.32748 -27.20781 -26.67054 -22.84119 -21.72447 -19.33564 -18.26768 -17.43016 -16.87752 -16.57416 -16.07127 -15.76534 -15.05461 -14.44968 -14.29896 -13.96344 -13.63878 -13.27077 -13.07155 -12.86864 -12.83042 -12.43454 -12.22474 -12.17534 -12.08463 -11.93929 -11.43270 -11.13632 -10.97643 -10.65354 -10.46850 -8.90877 -8.80034 -8.07541 -6.18181 0.89136 0.98514 1.42919 1.45109 1.57013 2.45939 3.20407 3.22168 3.42074 3.74419 3.83871 4.00973 4.09997 4.41841 4.47175 4.51229 4.69906 4.71456 4.77940 4.91023 4.92648 4.98530 5.10936 5.14602 5.30785 5.39361 5.54165 5.73203 5.90138 6.32941 6.71728 6.92189 7.01352 7.52336 8.98145 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.052752 B = 0.005504 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.655611 B = 5086.099646 C = 5209.092422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H -0.003 1.003 4 C -0.511 4.511 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.959 3.041 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.284 1.284 12 N -0.674 5.674 13 C 0.053 3.947 14 C -0.096 4.096 15 C -0.083 4.083 16 C -0.044 4.044 17 S -0.363 6.363 18 C -0.043 4.043 19 C -0.100 4.100 20 H 0.057 0.943 21 H 0.034 0.966 22 H 0.026 0.974 23 H 0.259 0.741 24 H 0.335 0.665 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.049 0.951 28 H 0.130 0.870 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 -2.378 15.075 15.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.015 0.985 4 C -0.550 4.550 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.210 1.210 12 N -0.304 5.304 13 C -0.057 4.057 14 C -0.134 4.134 15 C -0.085 4.085 16 C -0.192 4.192 17 S -0.137 6.137 18 C -0.191 4.191 19 C -0.140 4.140 20 H 0.076 0.924 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.069 0.931 24 H 0.153 0.847 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.068 0.932 28 H 0.148 0.852 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.149 0.851 32 H 0.107 0.893 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.922 -1.250 15.306 15.632 hybrid contribution -1.381 -0.432 -1.327 1.963 sum 1.541 -1.682 13.978 14.163 Atomic orbital electron populations 1.22243 0.99993 0.99300 0.99954 1.18944 0.89953 0.92485 0.87940 0.98507 1.21516 1.30053 1.12311 0.91124 0.92660 1.25719 0.95566 0.95899 1.01936 1.70022 1.38322 1.24382 1.23799 0.85494 0.78041 0.78616 0.79365 1.19194 1.20619 1.21049 1.60745 1.57327 1.09200 1.03080 1.22943 0.96628 0.95753 0.90408 1.22812 0.97685 1.00908 0.91996 1.22240 0.96930 0.95409 0.93900 1.24287 1.01621 0.92714 1.00557 1.89161 1.21893 1.14496 1.88138 1.24166 0.93840 1.00245 1.00846 1.23055 0.98372 0.98957 0.93612 0.92370 0.94725 0.95528 0.93140 0.84700 0.93118 0.89445 0.93182 0.85228 0.88321 0.89210 0.85091 0.89316 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.30 8.93 71.98 0.64 -6.65 16 2 C 0.22 10.71 2.43 44.17 0.11 10.81 16 3 H 0.00 -0.17 7.84 -2.39 -0.02 -0.19 16 4 C -0.51 -28.19 8.84 25.60 0.23 -27.96 16 5 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.36 5.30 84.66 0.45 0.81 16 7 N -0.92 -53.51 11.32 21.45 0.24 -53.27 16 8 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 N -0.67 -26.67 6.29 -470.30 -2.96 -29.63 16 13 C 0.05 1.70 3.84 45.50 0.17 1.88 16 14 C -0.10 -2.86 7.58 31.00 0.24 -2.62 16 15 C -0.08 -1.81 0.93 -52.23 -0.05 -1.86 16 16 C -0.04 -0.84 7.69 71.85 0.55 -0.28 16 17 S -0.36 -8.95 24.79 -56.49 -1.40 -10.35 16 18 C -0.04 -0.89 7.69 71.85 0.55 -0.33 16 19 C -0.10 -2.16 7.36 31.00 0.23 -1.93 16 20 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 21 H 0.03 1.53 8.13 -2.39 -0.02 1.51 16 22 H 0.03 1.08 7.74 -2.38 -0.02 1.06 16 23 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 24 H 0.33 12.17 8.29 -89.69 -0.74 11.43 16 25 H 0.05 1.77 7.49 -2.38 -0.02 1.75 16 26 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.13 1.81 8.14 -2.38 -0.02 1.79 16 29 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -61.21 280.66 1.37 -59.84 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.34 Total: 15.55 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 3.12 Total: -28.15 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -2.72 Total: -82.90 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.40 Total: -10.35 kcal Total: -61.21 1.37 -59.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642818187.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.536 kcal (2) G-P(sol) polarization free energy of solvation -61.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds