Wall clock time and date at job start Mon Mar 30 2020 03:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86803 * 120.00102 * 2 1 4 4 H 1.48504 * 109.47462 * 240.00152 * 3 2 1 5 5 H 1.48503 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47162 * 119.99857 * 3 2 1 7 7 C 1.40044 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00117 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99847 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00380 * 180.02562 * 9 7 2 12 12 C 1.47031 * 125.64646 * 0.02562 * 11 9 7 13 13 C 1.54327 * 107.26879 * 181.04030 * 12 11 9 14 14 C 1.55156 * 102.94181 * 22.19441 * 13 12 11 15 15 H 1.08999 * 111.00338 * 82.57390 * 14 13 12 16 16 N 1.46505 * 111.00112 * 206.38508 * 14 13 12 17 17 C 1.34774 * 119.99975 * 205.00175 * 16 14 13 18 18 N 1.34775 * 119.99826 * 179.97438 * 17 16 14 19 19 O 1.21588 * 119.99961 * 359.97438 * 17 16 14 20 20 C 1.47422 * 125.65218 * 179.97438 * 11 9 7 21 21 H 0.97001 * 120.00225 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.88059 * 61.62395 * 12 11 9 23 23 H 1.08994 * 109.87878 * 300.45675 * 12 11 9 24 24 H 1.09001 * 110.71763 * 140.55775 * 13 12 11 25 25 H 1.08997 * 110.71798 * 263.82943 * 13 12 11 26 26 H 0.96997 * 119.99911 * 24.99737 * 16 14 13 27 27 H 0.96993 * 120.00398 * 0.02562 * 18 17 16 28 28 H 0.97007 * 119.99277 * 179.97438 * 18 17 16 29 29 H 1.09000 * 110.36378 * 37.05323 * 20 11 9 30 30 H 1.09001 * 110.46274 * 274.77499 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6965 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4804 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 3.4121 -3.7924 0.0000 13 6 3.7230 -5.3037 -0.0270 14 6 2.4228 -5.9156 -0.6123 15 1 2.4183 -5.8555 -1.7006 16 7 2.2459 -7.2993 -0.1648 17 6 1.5161 -8.1584 -0.9035 18 7 1.3538 -9.4315 -0.4920 19 8 1.0040 -7.7848 -1.9411 20 6 1.3411 -4.9907 0.0000 21 1 -0.4850 0.8400 -0.0004 22 1 3.8286 -3.3443 0.9021 23 1 3.8324 -3.3116 -0.8833 24 1 4.5733 -5.5110 -0.6767 25 1 3.9058 -5.6779 0.9803 26 1 2.6542 -7.5972 0.6631 27 1 1.7619 -9.7294 0.3359 28 1 0.8281 -10.0496 -1.0236 29 1 0.4415 -5.0002 -0.6154 30 1 1.1069 -5.3026 1.0178 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690744603.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:27 Heat of formation + Delta-G solvation = -66.898029 kcal Electronic energy + Delta-G solvation = -15658.929291 eV Core-core repulsion = 12875.085730 eV Total energy + Delta-G solvation = -2783.843561 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.91713 -38.21300 -35.88562 -33.93450 -33.13741 -32.45618 -29.56771 -28.12804 -25.92058 -22.79552 -21.34205 -20.66375 -19.12236 -18.33386 -17.35841 -16.47861 -15.67516 -15.50202 -14.93731 -14.33102 -14.24074 -13.61097 -13.32974 -13.02940 -12.77781 -11.90819 -11.59730 -11.24653 -11.14678 -11.09409 -10.81338 -10.49823 -10.34931 -10.20707 -10.18200 -9.73226 -8.94382 -8.83395 -7.63013 -7.18825 -6.18347 -4.63679 2.89253 3.16831 3.21519 3.23550 3.26126 4.09595 4.40717 4.56693 4.68589 4.89396 5.16490 5.26721 5.70576 5.78017 5.78860 5.96659 6.30725 6.38726 6.45648 6.58971 6.65701 6.78540 6.89432 7.38364 7.44701 7.96891 8.10407 8.41128 8.65843 9.02614 9.49749 10.59086 10.77803 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.057643 B = 0.005961 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.635465 B = 4696.305249 C = 5019.626571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.086 3.914 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.571 3.429 10 O -0.574 6.574 11 N -0.644 5.644 12 C 0.123 3.877 13 C -0.138 4.138 14 C 0.146 3.854 15 H 0.103 0.897 16 N -0.732 5.732 17 C 0.703 3.297 18 N -0.871 5.871 19 O -0.590 6.590 20 C 0.106 3.894 21 H 0.269 0.731 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.395 0.605 27 H 0.395 0.605 28 H 0.413 0.587 29 H 0.069 0.931 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.040 -13.873 2.536 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.377 3.623 10 O -0.456 6.456 11 N -0.385 5.385 12 C -0.002 4.002 13 C -0.176 4.176 14 C 0.040 3.960 15 H 0.121 0.879 16 N -0.387 5.387 17 C 0.401 3.599 18 N -0.439 5.439 19 O -0.467 6.467 20 C -0.019 4.019 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.229 0.771 27 H 0.222 0.778 28 H 0.244 0.756 29 H 0.087 0.913 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.754 -13.169 1.661 15.372 hybrid contribution 0.714 0.141 0.691 1.003 sum 8.468 -13.028 2.352 15.715 Atomic orbital electron populations 1.70013 1.07100 1.27474 1.35055 1.25737 0.94634 1.00328 0.92636 0.86407 0.79797 0.80941 0.79450 1.19219 1.20533 1.19264 1.20844 0.93564 0.88906 1.54212 0.91229 1.18061 0.86698 0.81160 0.76339 1.90619 1.13912 1.85781 1.55304 1.48671 1.04572 1.04559 1.80741 1.21550 0.84436 0.93020 1.01191 1.22943 0.96925 0.96591 1.01170 1.22098 0.95237 0.78346 1.00329 0.87881 1.45010 1.55933 1.11152 1.26643 1.16012 0.79391 0.80948 0.83501 1.42988 1.60150 1.11402 1.29368 1.91002 1.53398 1.77337 1.24975 1.22121 0.96497 0.84231 0.99072 0.91971 0.92460 0.92371 0.90309 0.90852 0.77122 0.77796 0.75558 0.91272 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.43 11.83 55.55 0.66 -22.77 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.25 29.56 -169.99 -5.02 15.23 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.54 -15.43 9.06 -35.63 -0.32 -15.75 16 8 H 0.07 1.81 7.16 -52.48 -0.38 1.43 16 9 C 0.57 16.90 7.78 -12.99 -0.10 16.80 16 10 O -0.57 -19.44 15.28 5.20 0.08 -19.36 16 11 N -0.64 -15.18 3.33 -172.16 -0.57 -15.75 16 12 C 0.12 2.20 6.05 -3.06 -0.02 2.18 16 13 C -0.14 -1.80 6.60 -24.90 -0.16 -1.96 16 14 C 0.15 2.29 3.42 -65.77 -0.23 2.06 16 15 H 0.10 1.83 7.54 -51.93 -0.39 1.44 16 16 N -0.73 -8.95 5.20 -56.57 -0.29 -9.25 16 17 C 0.70 9.77 8.84 -86.92 -0.77 9.00 16 18 N -0.87 -7.39 8.88 27.63 0.25 -7.14 16 19 O -0.59 -11.42 16.82 5.29 0.09 -11.33 16 20 C 0.11 2.19 6.60 -2.52 -0.02 2.17 16 21 H 0.27 7.45 8.29 -40.82 -0.34 7.11 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.80 8.00 -51.93 -0.42 0.38 16 26 H 0.40 3.37 8.58 -40.82 -0.35 3.02 16 27 H 0.39 1.94 8.84 -40.82 -0.36 1.58 16 28 H 0.41 3.10 8.93 -40.82 -0.36 2.74 16 29 H 0.07 1.65 8.04 -51.93 -0.42 1.23 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 264.02 15.07 3.98 3.98 Total: -1.00 -38.89 264.02 -6.06 -44.94 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -3.50 Total: 4.60 kcal Atomic # 6 Polarization: 18.57 SS G_CDS: -1.71 Total: 16.86 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.04 Total: -54.91 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: 0.17 Total: -30.69 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -38.89 -6.06 -44.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690744603.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.955 kcal (2) G-P(sol) polarization free energy of solvation -38.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds