Wall clock time and date at job start Mon Mar 30 2020 03:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86803 * 120.00102 * 2 1 4 4 H 1.48504 * 109.47462 * 240.00152 * 3 2 1 5 5 H 1.48503 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47162 * 119.99857 * 3 2 1 7 7 C 1.40044 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00117 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99847 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00380 * 180.02562 * 9 7 2 12 12 C 1.47031 * 125.64646 * 0.02562 * 11 9 7 13 13 C 1.54327 * 107.26879 * 181.04030 * 12 11 9 14 14 C 1.55156 * 102.94181 * 22.19441 * 13 12 11 15 15 H 1.08999 * 111.00338 * 82.57390 * 14 13 12 16 16 N 1.46505 * 111.00112 * 206.38508 * 14 13 12 17 17 C 1.34774 * 119.99975 * 205.00175 * 16 14 13 18 18 N 1.34775 * 119.99826 * 179.97438 * 17 16 14 19 19 O 1.21588 * 119.99961 * 359.97438 * 17 16 14 20 20 C 1.47422 * 125.65218 * 179.97438 * 11 9 7 21 21 H 0.97001 * 120.00225 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.88059 * 61.62395 * 12 11 9 23 23 H 1.08994 * 109.87878 * 300.45675 * 12 11 9 24 24 H 1.09001 * 110.71763 * 140.55775 * 13 12 11 25 25 H 1.08997 * 110.71798 * 263.82943 * 13 12 11 26 26 H 0.96997 * 119.99911 * 24.99737 * 16 14 13 27 27 H 0.96993 * 120.00398 * 0.02562 * 18 17 16 28 28 H 0.97007 * 119.99277 * 179.97438 * 18 17 16 29 29 H 1.09000 * 110.36378 * 37.05323 * 20 11 9 30 30 H 1.09001 * 110.46274 * 274.77499 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6965 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2751 -2.4804 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 3.4121 -3.7924 0.0000 13 6 3.7230 -5.3037 -0.0270 14 6 2.4228 -5.9156 -0.6123 15 1 2.4183 -5.8555 -1.7006 16 7 2.2459 -7.2993 -0.1648 17 6 1.5161 -8.1584 -0.9035 18 7 1.3538 -9.4315 -0.4920 19 8 1.0040 -7.7848 -1.9411 20 6 1.3411 -4.9907 0.0000 21 1 -0.4850 0.8400 -0.0004 22 1 3.8286 -3.3443 0.9021 23 1 3.8324 -3.3116 -0.8833 24 1 4.5733 -5.5110 -0.6767 25 1 3.9058 -5.6779 0.9803 26 1 2.6542 -7.5972 0.6631 27 1 1.7619 -9.7294 0.3359 28 1 0.8281 -10.0496 -1.0236 29 1 0.4415 -5.0002 -0.6154 30 1 1.1069 -5.3026 1.0178 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690744603.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:27 Heat of formation + Delta-G solvation = -101.752373 kcal Electronic energy + Delta-G solvation = -15660.440689 eV Core-core repulsion = 12875.085730 eV Total energy + Delta-G solvation = -2785.354959 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.13871 -39.88271 -37.80153 -35.23218 -34.67090 -34.26557 -31.11390 -29.77180 -27.90174 -24.45841 -22.54776 -21.95181 -21.05707 -19.41406 -18.72834 -18.04026 -17.60416 -16.94633 -16.20058 -16.11276 -15.44012 -15.42706 -14.82099 -14.62271 -14.29974 -13.74399 -13.37745 -13.06932 -12.77294 -12.66581 -12.49689 -12.30563 -12.04599 -11.76138 -11.48877 -10.93000 -10.73979 -10.13253 -9.88330 -9.12660 -8.31027 -6.87752 1.40066 1.44424 1.56475 1.82288 2.14325 2.24877 2.43296 2.89695 3.54123 3.56463 3.69811 3.79893 4.10844 4.34696 4.47984 4.74619 4.86746 4.96275 4.98651 5.23724 5.30376 5.47794 5.63703 5.91825 6.01449 6.03639 6.36687 6.84225 7.12959 7.44736 7.66219 8.42549 8.65222 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.057643 B = 0.005961 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.635465 B = 4696.305249 C = 5019.626571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.025 3.975 3 Si 1.003 2.997 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.249 1.249 7 C -0.562 4.562 8 H 0.093 0.907 9 C 0.547 3.453 10 O -0.637 6.637 11 N -0.653 5.653 12 C 0.111 3.889 13 C -0.111 4.111 14 C 0.163 3.837 15 H 0.080 0.920 16 N -0.714 5.714 17 C 0.697 3.303 18 N -0.843 5.843 19 O -0.651 6.651 20 C 0.103 3.897 21 H 0.275 0.725 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.115 0.885 25 H 0.109 0.891 26 H 0.419 0.581 27 H 0.417 0.583 28 H 0.421 0.579 29 H 0.019 0.981 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.373 -14.555 3.567 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.190 4.190 3 Si 0.821 3.179 4 H -0.177 1.177 5 H -0.200 1.200 6 H -0.173 1.173 7 C -0.598 4.598 8 H 0.111 0.889 9 C 0.354 3.646 10 O -0.525 6.525 11 N -0.391 5.391 12 C -0.012 4.012 13 C -0.149 4.149 14 C 0.055 3.945 15 H 0.098 0.902 16 N -0.371 5.371 17 C 0.395 3.605 18 N -0.412 5.412 19 O -0.532 6.532 20 C -0.022 4.022 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.076 0.924 24 H 0.133 0.867 25 H 0.127 0.873 26 H 0.257 0.743 27 H 0.248 0.752 28 H 0.254 0.746 29 H 0.037 0.963 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.175 -13.973 2.759 18.103 hybrid contribution -0.358 0.227 0.394 0.579 sum 10.817 -13.745 3.153 17.773 Atomic orbital electron populations 1.70210 1.09811 1.29140 1.36304 1.27107 0.95537 1.05251 0.91083 0.85003 0.78137 0.74201 0.80524 1.17666 1.20013 1.17313 1.21378 0.94802 0.89270 1.54362 0.88858 1.18558 0.86369 0.83429 0.76209 1.90556 1.16523 1.87338 1.58069 1.48451 1.07426 1.04147 1.79088 1.21910 0.80598 0.97043 1.01639 1.22895 0.96018 0.92132 1.03894 1.21665 0.94740 0.79248 0.98874 0.90197 1.44659 1.55646 1.09429 1.27386 1.16298 0.79026 0.82321 0.82899 1.42702 1.59143 1.09391 1.29969 1.90975 1.55752 1.78726 1.27796 1.22244 0.96533 0.84461 0.98981 0.91511 0.91463 0.92442 0.86658 0.87291 0.74330 0.75211 0.74646 0.96277 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -52.25 11.83 21.83 0.26 -52.00 16 2 C 0.02 1.42 5.50 85.30 0.47 1.89 16 3 Si 1.00 41.30 29.56 68.60 2.03 43.33 16 4 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 7 C -0.56 -32.66 9.06 24.83 0.22 -32.43 16 8 H 0.09 4.77 7.16 -2.91 -0.02 4.75 16 9 C 0.55 33.80 7.78 86.36 0.67 34.47 16 10 O -0.64 -45.95 15.28 -4.31 -0.07 -46.02 16 11 N -0.65 -31.43 3.33 -816.82 -2.72 -34.14 16 12 C 0.11 3.78 6.05 86.73 0.52 4.31 16 13 C -0.11 -2.47 6.60 31.78 0.21 -2.26 16 14 C 0.16 4.89 3.42 46.39 0.16 5.05 16 15 H 0.08 2.84 7.54 -2.39 -0.02 2.83 16 16 N -0.71 -15.77 5.20 -451.14 -2.35 -18.12 16 17 C 0.70 18.44 8.84 179.06 1.58 20.03 16 18 N -0.84 -12.19 8.88 -184.75 -1.64 -13.83 16 19 O -0.65 -25.60 16.82 -3.99 -0.07 -25.66 16 20 C 0.10 4.39 6.60 86.86 0.57 4.96 16 21 H 0.28 15.75 8.29 -92.71 -0.77 14.98 16 22 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.11 1.73 8.00 -2.39 -0.02 1.71 16 26 H 0.42 5.37 8.58 -92.71 -0.80 4.58 16 27 H 0.42 2.57 8.84 -92.71 -0.82 1.75 16 28 H 0.42 5.42 8.93 -92.70 -0.83 4.59 16 29 H 0.02 0.97 8.04 -2.39 -0.02 0.95 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -92.93 264.02 -1.38 -94.31 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -1.25 Total: 16.12 kcal Atomic # 6 Polarization: 31.60 SS G_CDS: 4.42 Total: 36.02 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -6.45 Total: -118.09 kcal Atomic # 8 Polarization: -71.55 SS G_CDS: -0.13 Total: -71.68 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -92.93 -1.38 -94.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690744603.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.441 kcal (2) G-P(sol) polarization free energy of solvation -92.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds