Wall clock time and date at job start Mon Mar 30 2020 03:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00280 * 2 1 4 4 H 1.48498 * 109.47180 * 240.00452 * 3 2 1 5 5 H 1.48510 * 109.47018 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47432 * 120.00003 * 3 2 1 7 7 C 1.38814 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00311 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99535 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.65034 * 0.05869 * 9 7 2 11 11 C 1.54902 * 104.83430 * 155.82410 * 10 9 7 12 12 H 1.09003 * 111.04002 * 278.92062 * 11 10 9 13 13 C 1.50700 * 111.00676 * 155.08245 * 11 10 9 14 14 N 1.34777 * 119.99675 * 68.08146 * 13 11 10 15 15 O 1.21283 * 119.99803 * 247.80270 * 13 11 10 16 16 C 1.55160 * 101.58026 * 37.00619 * 11 10 9 17 17 H 1.09001 * 110.72026 * 82.86724 * 16 11 10 18 18 C 1.50708 * 110.71994 * 206.13388 * 16 11 10 19 19 N 1.34768 * 119.99665 * 180.02562 * 18 16 11 20 20 O 1.21282 * 119.99721 * 0.02562 * 18 16 11 21 21 C 1.47018 * 125.64743 * 180.02562 * 9 7 2 22 22 H 0.97004 * 119.99827 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.36456 * 36.97951 * 10 9 7 24 24 H 1.09000 * 110.36705 * 274.66555 * 10 9 7 25 25 H 0.97004 * 119.99652 * 179.72868 * 14 13 11 26 26 H 0.97000 * 119.99894 * 359.71837 * 14 13 11 27 27 H 0.96998 * 120.00873 * 0.02562 * 19 18 16 28 28 H 0.97007 * 119.99900 * 180.02562 * 19 18 16 29 29 H 1.09008 * 109.87965 * 61.68678 * 21 9 7 30 30 H 1.09001 * 109.88562 * 300.52793 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5332 -0.0012 11 6 -0.4015 -3.9318 -0.6142 12 1 -0.3518 -3.8975 -1.7026 13 6 -1.7253 -4.4858 -0.1541 14 7 -2.8744 -3.9109 -0.5610 15 8 -1.7567 -5.4519 0.5784 16 6 0.7784 -4.7523 -0.0293 17 1 0.5455 -5.0987 0.9776 18 6 1.1182 -5.9129 -0.9286 19 7 2.1192 -6.7521 -0.5965 20 8 0.4910 -6.0917 -1.9511 21 6 1.9317 -3.7275 -0.0005 22 1 -0.4850 0.8401 0.0004 23 1 -0.5990 -1.7583 -0.6164 24 1 -0.5278 -2.4875 1.0170 25 1 -3.7266 -4.2699 -0.2680 26 1 -2.8492 -3.1381 -1.1468 27 1 2.6207 -6.6093 0.2214 28 1 2.3382 -7.4989 -1.1756 29 1 2.5275 -3.8647 0.9019 30 1 2.5589 -3.8506 -0.8835 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693461132.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:50 Heat of formation + Delta-G solvation = -87.113656 kcal Electronic energy + Delta-G solvation = -16246.775777 eV Core-core repulsion = 13462.055601 eV Total energy + Delta-G solvation = -2784.720176 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.47872 -39.90334 -38.20927 -34.80073 -34.64924 -34.28298 -31.54579 -29.83814 -26.94778 -24.41181 -22.83334 -21.52382 -20.57278 -19.16142 -18.57783 -18.21065 -17.64424 -17.29120 -16.80023 -16.00951 -15.77490 -15.41156 -15.11399 -14.52861 -14.13760 -14.10675 -13.73249 -13.09360 -12.67904 -12.47861 -12.19610 -12.07167 -11.87404 -11.68326 -11.05866 -10.94418 -10.68715 -10.63074 -10.61397 -8.93037 -7.78192 -5.22335 1.52517 1.54871 1.60287 1.61711 1.64603 2.49569 2.54852 2.70777 3.35536 3.41071 3.64820 3.97108 4.05272 4.31899 4.36873 4.53465 4.57963 4.87179 5.12553 5.39773 5.50798 5.69845 5.92668 5.94184 6.24775 6.41084 6.45112 7.08546 7.34576 7.34713 7.73462 8.36989 9.25214 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.030165 B = 0.009166 C = 0.007455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.018348 B = 3054.196004 C = 3755.020192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.982 3.018 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.088 0.912 9 N -0.622 5.622 10 C 0.182 3.818 11 C -0.115 4.115 12 H 0.102 0.898 13 C 0.539 3.461 14 N -0.832 5.832 15 O -0.587 6.587 16 C -0.101 4.101 17 H 0.114 0.886 18 C 0.537 3.463 19 N -0.829 5.829 20 O -0.585 6.585 21 C 0.148 3.852 22 H 0.251 0.749 23 H 0.095 0.905 24 H -0.005 1.005 25 H 0.409 0.591 26 H 0.415 0.585 27 H 0.418 0.582 28 H 0.410 0.590 29 H 0.054 0.946 30 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 -8.082 -0.482 8.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.255 4.255 3 Si 0.810 3.190 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.370 4.370 8 H 0.106 0.894 9 N -0.348 5.348 10 C 0.056 3.944 11 C -0.138 4.138 12 H 0.120 0.880 13 C 0.324 3.676 14 N -0.394 5.394 15 O -0.468 6.468 16 C -0.123 4.123 17 H 0.132 0.868 18 C 0.322 3.678 19 N -0.393 5.393 20 O -0.465 6.465 21 C 0.023 3.977 22 H 0.060 0.940 23 H 0.112 0.888 24 H 0.013 0.987 25 H 0.241 0.759 26 H 0.245 0.755 27 H 0.249 0.751 28 H 0.242 0.758 29 H 0.072 0.928 30 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.707 -8.428 -0.621 8.480 hybrid contribution 0.195 0.871 0.086 0.897 sum 0.902 -7.557 -0.535 7.629 Atomic orbital electron populations 1.69902 1.06044 1.25429 1.58138 1.25595 0.96701 1.00848 1.02308 0.85103 0.77113 0.78691 0.78076 1.20402 1.22023 1.20560 1.19429 0.91253 0.83104 1.43171 0.89447 1.44659 1.02148 1.00911 1.87128 1.21593 0.85059 0.90950 0.96827 1.22548 0.91154 0.97935 1.02166 0.87987 1.20305 0.86871 0.81855 0.78551 1.43586 1.07744 1.35161 1.52957 1.90621 1.88454 1.28793 1.38936 1.22141 0.96328 0.93403 1.00407 0.86837 1.20273 0.79322 0.83207 0.85029 1.43544 1.35623 1.31107 1.29044 1.90663 1.53014 1.74895 1.27926 1.21335 0.93092 0.83649 0.99635 0.93968 0.88772 0.98673 0.75924 0.75467 0.75125 0.75784 0.92810 0.94769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.66 10.09 21.65 0.22 -52.44 16 2 C -0.06 -3.30 5.49 84.86 0.47 -2.83 16 3 Si 0.98 43.40 29.55 68.60 2.03 45.43 16 4 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.24 -12.76 10.27 84.03 0.86 -11.89 16 8 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.62 -30.47 3.39 -692.01 -2.35 -32.82 16 10 C 0.18 8.53 5.35 86.85 0.46 8.99 16 11 C -0.12 -4.59 2.53 -10.15 -0.03 -4.62 16 12 H 0.10 4.22 7.40 -2.39 -0.02 4.20 16 13 C 0.54 20.39 7.42 87.66 0.65 21.04 16 14 N -0.83 -23.94 8.87 -173.53 -1.54 -25.48 16 15 O -0.59 -24.96 16.55 -3.04 -0.05 -25.01 16 16 C -0.10 -3.65 2.47 -10.35 -0.03 -3.68 16 17 H 0.11 4.06 7.39 -2.39 -0.02 4.05 16 18 C 0.54 18.08 7.27 87.66 0.64 18.72 16 19 N -0.83 -18.41 8.87 -173.53 -1.54 -19.95 16 20 O -0.58 -23.95 16.54 -3.04 -0.05 -24.00 16 21 C 0.15 5.74 6.83 86.73 0.59 6.33 16 22 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 23 H 0.09 4.85 5.87 -2.39 -0.01 4.83 16 24 H 0.00 -0.24 8.03 -2.39 -0.02 -0.26 16 25 H 0.41 9.71 8.93 -92.71 -0.83 8.88 16 26 H 0.41 10.59 8.83 -92.71 -0.82 9.77 16 27 H 0.42 6.78 8.83 -92.71 -0.82 5.96 16 28 H 0.41 7.47 8.93 -92.70 -0.83 6.64 16 29 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.03 1.30 7.81 -2.39 -0.02 1.29 16 Total: -1.00 -71.00 259.11 -1.73 -72.73 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: -2.07 Total: 29.48 kcal Atomic # 6 Polarization: 28.44 SS G_CDS: 3.62 Total: 32.06 kcal Atomic # 7 Polarization: -125.48 SS G_CDS: -5.21 Total: -130.69 kcal Atomic # 8 Polarization: -48.91 SS G_CDS: -0.10 Total: -49.01 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -71.00 -1.73 -72.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693461132.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.379 kcal (2) G-P(sol) polarization free energy of solvation -71.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds