Wall clock time and date at job start Mon Mar 30 2020 03:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 115.55300 * 2 1 4 4 O 1.21293 * 120.00210 * 126.84392 * 3 2 1 5 5 N 1.34770 * 119.99996 * 306.85168 * 3 2 1 6 6 C 1.37102 * 120.00083 * 174.53171 * 5 3 2 7 7 H 1.07995 * 119.99887 * 24.47776 * 6 5 3 8 8 C 1.38955 * 119.99956 * 204.19133 * 6 5 3 9 9 N 1.31415 * 119.99851 * 12.30325 * 8 6 5 10 10 Si 1.86796 * 120.00105 * 192.29573 * 8 6 5 11 11 H 1.48504 * 109.47030 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46924 * 120.00109 * 10 8 6 13 13 H 1.48497 * 109.47558 * 240.00670 * 10 8 6 14 14 C 1.46498 * 120.00089 * 354.53319 * 5 3 2 15 15 C 1.53006 * 117.49668 * 308.29246 * 14 5 3 16 16 C 1.53005 * 117.50020 * 239.63264 * 14 5 3 17 17 C 1.53001 * 117.49947 * 214.32611 * 2 1 3 18 18 C 1.53006 * 117.49718 * 145.66961 * 2 1 3 19 19 H 1.08999 * 117.50114 * 215.00491 * 18 2 1 20 20 F 1.39896 * 117.49748 * 0.02562 * 18 2 1 21 21 H 1.08999 * 109.46971 * 56.61655 * 1 2 3 22 22 H 1.08998 * 109.47303 * 176.61867 * 1 2 3 23 23 H 1.09004 * 109.47285 * 296.61837 * 1 2 3 24 24 H 0.97001 * 119.99620 * 184.96103 * 9 8 6 25 25 H 1.08997 * 115.55257 * 93.95927 * 14 5 3 26 26 H 1.08996 * 117.49866 * 0.02562 * 15 14 5 27 27 H 1.09004 * 117.49648 * 145.01805 * 15 14 5 28 28 H 1.08996 * 117.50009 * 214.97539 * 16 14 5 29 29 H 1.09001 * 117.49434 * 359.97438 * 16 14 5 30 30 H 1.09002 * 117.49525 * 359.97438 * 17 2 1 31 31 H 1.08997 * 117.49988 * 144.97420 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.0099 1.6351 0.8406 5 7 1.8391 2.2695 -0.9339 6 6 2.3453 3.5419 -0.8683 7 1 3.2770 3.7265 -0.3543 8 6 1.6626 4.5931 -1.4681 9 7 0.4280 4.4221 -1.8845 10 14 2.4997 6.2491 -1.6825 11 1 3.8784 6.1815 -1.1346 12 1 2.5575 6.5913 -3.1264 13 1 1.7291 7.2910 -0.9572 14 6 0.9277 1.8989 -2.0193 15 6 1.2626 0.6419 -2.8249 16 6 1.4476 2.0257 -3.4528 17 6 2.2364 -1.1208 -0.7653 18 6 2.2364 -1.1208 0.7654 19 1 3.1713 -0.8748 1.2690 20 9 1.4339 -2.0674 1.4112 21 1 -0.3633 0.5655 -0.8581 22 1 -0.3634 -1.0258 -0.0606 23 1 -0.3634 0.4605 0.9188 24 1 -0.0237 5.1320 -2.3672 25 1 -0.1255 2.1190 -1.8447 26 1 2.1607 0.0905 -2.5469 27 1 0.4296 0.0352 -3.1804 28 1 0.7364 2.3287 -4.2211 29 1 2.4676 2.3852 -3.5881 30 1 1.6111 -1.8584 -1.2684 31 1 3.1711 -0.8746 -1.2691 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706784893.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:00 Heat of formation + Delta-G solvation = -18.197469 kcal Electronic energy + Delta-G solvation = -16515.049135 eV Core-core repulsion = 13713.397428 eV Total energy + Delta-G solvation = -2801.651708 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.28254 -39.38030 -36.34428 -35.54552 -33.02090 -31.10052 -28.31046 -25.34961 -22.71588 -22.49709 -21.18082 -20.87640 -18.22837 -16.98800 -16.63037 -15.38278 -15.18302 -14.97097 -14.37543 -14.10986 -13.72665 -13.45103 -13.02989 -12.64085 -12.04606 -11.86931 -11.77293 -11.63703 -11.12953 -11.10574 -10.75389 -10.50067 -10.34741 -9.97673 -9.67019 -9.41672 -9.34427 -8.86345 -8.43405 -7.73321 -6.31642 -3.93328 3.12354 3.24763 3.30714 3.53689 3.99754 4.09459 4.37269 4.68498 4.81629 4.96041 5.11901 5.16966 5.42649 5.61462 5.77208 5.82850 5.93305 6.05620 6.13069 6.23200 6.26534 6.36303 6.44620 6.62843 6.68478 6.88404 7.18866 7.54555 8.08604 8.44133 9.12895 9.37548 9.91868 10.71659 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.038859 B = 0.009491 C = 0.008519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.379728 B = 2949.564343 C = 3285.907851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.138 4.138 3 C 0.489 3.511 4 O -0.584 6.584 5 N -0.412 5.412 6 C -0.311 4.311 7 H 0.099 0.901 8 C 0.040 3.960 9 N -0.870 5.870 10 Si 0.920 3.080 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.282 1.282 14 C 0.134 3.866 15 C -0.221 4.221 16 C -0.162 4.162 17 C -0.171 4.171 18 C 0.035 3.965 19 H 0.138 0.862 20 F -0.188 7.188 21 H 0.081 0.919 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.266 0.734 25 H 0.117 0.883 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.887 -7.617 -2.905 8.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.142 4.142 3 C 0.276 3.724 4 O -0.469 6.469 5 N -0.129 5.129 6 C -0.438 4.438 7 H 0.117 0.883 8 C -0.164 4.164 9 N -0.508 5.508 10 Si 0.746 3.254 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.208 1.208 14 C 0.029 3.971 15 C -0.258 4.258 16 C -0.199 4.199 17 C -0.208 4.208 18 C -0.001 4.001 19 H 0.155 0.845 20 F -0.168 7.168 21 H 0.100 0.900 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.135 0.865 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.676 -7.322 -2.521 7.773 hybrid contribution 0.112 0.843 -0.337 0.914 sum -0.564 -6.480 -2.857 7.104 Atomic orbital electron populations 1.21380 0.90517 1.01867 1.03512 1.22142 0.96812 0.91278 1.03983 1.18838 0.85862 0.84875 0.82799 1.90525 1.36251 1.79967 1.40147 1.42976 1.40437 1.09720 1.19808 1.19645 1.06026 0.81665 1.36455 0.88338 1.25239 0.94603 0.99114 0.97464 1.69922 1.09536 1.34495 1.36860 0.85968 0.79641 0.81855 0.77892 1.19285 1.20671 1.20752 1.21211 0.94689 0.95788 0.85411 1.23734 1.03365 0.91881 1.06854 1.22877 1.02102 0.97650 0.97318 1.23772 1.03228 1.00550 0.93296 1.22262 0.95351 0.90792 0.91734 0.84507 1.92739 1.75752 1.65559 1.82755 0.90029 0.92445 0.92062 0.92341 0.86550 0.88806 0.89407 0.89712 0.89447 0.87508 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 8.94 37.16 0.33 -1.67 16 2 C -0.14 -2.62 1.34 -155.66 -0.21 -2.83 16 3 C 0.49 11.84 6.86 -10.99 -0.08 11.77 16 4 O -0.58 -16.13 16.13 5.55 0.09 -16.04 16 5 N -0.41 -10.26 2.92 -107.73 -0.32 -10.58 16 6 C -0.31 -8.47 9.11 -14.93 -0.14 -8.61 16 7 H 0.10 2.84 7.41 -52.49 -0.39 2.45 16 8 C 0.04 1.04 5.04 -17.46 -0.09 0.95 16 9 N -0.87 -22.36 10.83 55.50 0.60 -21.76 16 10 Si 0.92 20.45 29.57 -169.99 -5.03 15.42 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 C 0.13 2.87 2.02 -67.93 -0.14 2.73 16 15 C -0.22 -3.79 7.77 -26.69 -0.21 -4.00 16 16 C -0.16 -3.17 9.62 -26.69 -0.26 -3.42 16 17 C -0.17 -2.64 7.17 -26.69 -0.19 -2.83 16 18 C 0.03 0.60 7.35 -26.69 -0.20 0.41 16 19 H 0.14 2.39 7.80 -51.93 -0.40 1.98 16 20 F -0.19 -3.21 16.95 2.25 0.04 -3.17 16 21 H 0.08 1.42 4.69 -51.93 -0.24 1.17 16 22 H 0.06 0.86 7.83 -51.93 -0.41 0.45 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 24 H 0.27 6.50 8.32 -40.82 -0.34 6.16 16 25 H 0.12 2.64 6.64 -51.93 -0.35 2.29 16 26 H 0.09 1.58 4.99 -51.93 -0.26 1.32 16 27 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 29 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 30 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.11 1.63 7.43 -51.93 -0.39 1.25 16 LS Contribution 258.77 15.07 3.90 3.90 Total: -1.00 -29.20 258.77 -5.56 -34.76 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -3.68 Total: 4.97 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.17 Total: -7.50 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.29 Total: -32.34 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.09 Total: -16.04 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.04 Total: -3.17 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.20 -5.56 -34.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706784893.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.560 kcal (2) G-P(sol) polarization free energy of solvation -29.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds