Wall clock time and date at job start Mon Mar 30 2020 03:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 115.55300 * 2 1 4 4 O 1.21293 * 120.00210 * 126.84392 * 3 2 1 5 5 N 1.34770 * 119.99996 * 306.85168 * 3 2 1 6 6 C 1.37102 * 120.00083 * 174.53171 * 5 3 2 7 7 H 1.07995 * 119.99887 * 24.47776 * 6 5 3 8 8 C 1.38955 * 119.99956 * 204.19133 * 6 5 3 9 9 N 1.31415 * 119.99851 * 12.30325 * 8 6 5 10 10 Si 1.86796 * 120.00105 * 192.29573 * 8 6 5 11 11 H 1.48504 * 109.47030 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46924 * 120.00109 * 10 8 6 13 13 H 1.48497 * 109.47558 * 240.00670 * 10 8 6 14 14 C 1.46498 * 120.00089 * 354.53319 * 5 3 2 15 15 C 1.53006 * 117.49668 * 308.29246 * 14 5 3 16 16 C 1.53005 * 117.50020 * 239.63264 * 14 5 3 17 17 C 1.53001 * 117.49947 * 214.32611 * 2 1 3 18 18 C 1.53006 * 117.49718 * 145.66961 * 2 1 3 19 19 H 1.08999 * 117.50114 * 215.00491 * 18 2 1 20 20 F 1.39896 * 117.49748 * 0.02562 * 18 2 1 21 21 H 1.08999 * 109.46971 * 56.61655 * 1 2 3 22 22 H 1.08998 * 109.47303 * 176.61867 * 1 2 3 23 23 H 1.09004 * 109.47285 * 296.61837 * 1 2 3 24 24 H 0.97001 * 119.99620 * 184.96103 * 9 8 6 25 25 H 1.08997 * 115.55257 * 93.95927 * 14 5 3 26 26 H 1.08996 * 117.49866 * 0.02562 * 15 14 5 27 27 H 1.09004 * 117.49648 * 145.01805 * 15 14 5 28 28 H 1.08996 * 117.50009 * 214.97539 * 16 14 5 29 29 H 1.09001 * 117.49434 * 359.97438 * 16 14 5 30 30 H 1.09002 * 117.49525 * 359.97438 * 17 2 1 31 31 H 1.08997 * 117.49988 * 144.97420 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.0099 1.6351 0.8406 5 7 1.8391 2.2695 -0.9339 6 6 2.3453 3.5419 -0.8683 7 1 3.2770 3.7265 -0.3543 8 6 1.6626 4.5931 -1.4681 9 7 0.4280 4.4221 -1.8845 10 14 2.4997 6.2491 -1.6825 11 1 3.8784 6.1815 -1.1346 12 1 2.5575 6.5913 -3.1264 13 1 1.7291 7.2910 -0.9572 14 6 0.9277 1.8989 -2.0193 15 6 1.2626 0.6419 -2.8249 16 6 1.4476 2.0257 -3.4528 17 6 2.2364 -1.1208 -0.7653 18 6 2.2364 -1.1208 0.7654 19 1 3.1713 -0.8748 1.2690 20 9 1.4339 -2.0674 1.4112 21 1 -0.3633 0.5655 -0.8581 22 1 -0.3634 -1.0258 -0.0606 23 1 -0.3634 0.4605 0.9188 24 1 -0.0237 5.1320 -2.3672 25 1 -0.1255 2.1190 -1.8447 26 1 2.1607 0.0905 -2.5469 27 1 0.4296 0.0352 -3.1804 28 1 0.7364 2.3287 -4.2211 29 1 2.4676 2.3852 -3.5881 30 1 1.6111 -1.8584 -1.2684 31 1 3.1711 -0.8746 -1.2691 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706784893.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:59 Heat of formation + Delta-G solvation = -35.623744 kcal Electronic energy + Delta-G solvation = -16515.804795 eV Core-core repulsion = 13713.397428 eV Total energy + Delta-G solvation = -2802.407368 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.63086 -41.08722 -38.00913 -37.17527 -34.87023 -33.00977 -29.69604 -27.27689 -24.23593 -24.04078 -22.79658 -22.37089 -19.88597 -18.81787 -18.15226 -17.13737 -16.78162 -16.63851 -15.90117 -15.73959 -15.32429 -15.10631 -14.65478 -14.17918 -13.54969 -13.48005 -13.24984 -13.06049 -12.91670 -12.77389 -12.47499 -12.15557 -12.13516 -11.67022 -11.16728 -11.05145 -10.75669 -10.58735 -10.25931 -9.65884 -8.28261 -5.98465 1.33327 1.40453 1.52359 1.84669 2.24397 2.55058 2.81829 3.01224 3.22598 3.29840 3.60175 3.70874 4.05856 4.14028 4.26913 4.37474 4.56448 4.67535 4.76386 4.85581 4.88655 4.96075 5.12316 5.15672 5.29856 5.42908 5.45419 5.54085 6.09285 6.51309 7.16145 7.47373 8.01980 8.72299 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.038859 B = 0.009491 C = 0.008519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.379728 B = 2949.564343 C = 3285.907851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.159 4.159 3 C 0.475 3.525 4 O -0.635 6.635 5 N -0.421 5.421 6 C -0.348 4.348 7 H 0.066 0.934 8 C 0.014 3.986 9 N -0.878 5.878 10 Si 0.977 3.023 11 H -0.277 1.277 12 H -0.265 1.265 13 H -0.278 1.278 14 C 0.107 3.893 15 C -0.176 4.176 16 C -0.168 4.168 17 C -0.135 4.135 18 C 0.034 3.966 19 H 0.128 0.872 20 F -0.184 7.184 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.042 0.958 24 H 0.272 0.728 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.127 0.873 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.145 0.855 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.744 -9.096 -4.568 10.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.163 4.163 3 C 0.264 3.736 4 O -0.524 6.524 5 N -0.137 5.137 6 C -0.475 4.475 7 H 0.084 0.916 8 C -0.190 4.190 9 N -0.515 5.515 10 Si 0.801 3.199 11 H -0.202 1.202 12 H -0.189 1.189 13 H -0.204 1.204 14 C 0.003 3.997 15 C -0.213 4.213 16 C -0.206 4.206 17 C -0.172 4.172 18 C -0.003 4.003 19 H 0.145 0.855 20 F -0.165 7.165 21 H 0.098 0.902 22 H 0.107 0.893 23 H 0.061 0.939 24 H 0.082 0.918 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.145 0.855 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.564 -8.815 -4.214 9.894 hybrid contribution 0.366 1.323 0.222 1.391 sum -1.198 -7.491 -3.992 8.573 Atomic orbital electron populations 1.21350 0.89132 1.03565 1.02554 1.21979 0.97622 0.89034 1.07623 1.19766 0.85192 0.86842 0.81779 1.90473 1.38531 1.81497 1.41863 1.43158 1.40489 1.09107 1.20989 1.19523 1.05947 0.83901 1.38171 0.91591 1.25850 0.95096 1.01484 0.96589 1.69985 1.09791 1.35410 1.36279 0.85135 0.78178 0.78112 0.78494 1.20230 1.18947 1.20353 1.21171 0.93287 1.00038 0.85234 1.23819 1.04536 0.90528 1.02442 1.22869 1.01169 1.00044 0.96472 1.23938 1.03151 0.98166 0.91940 1.22194 0.94614 0.90158 0.93329 0.85491 1.92747 1.75641 1.65156 1.82924 0.90193 0.89278 0.93916 0.91782 0.88051 0.88156 0.85495 0.88488 0.91429 0.83674 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.54 8.94 71.98 0.64 -2.90 16 2 C -0.16 -5.80 1.34 -52.93 -0.07 -5.87 16 3 C 0.47 23.48 6.86 87.66 0.60 24.08 16 4 O -0.64 -36.70 16.13 -3.07 -0.05 -36.74 16 5 N -0.42 -21.39 2.92 -613.13 -1.79 -23.19 16 6 C -0.35 -19.69 9.11 84.04 0.77 -18.92 16 7 H 0.07 4.06 7.41 -2.91 -0.02 4.04 16 8 C 0.01 0.71 5.04 84.93 0.43 1.14 16 9 N -0.88 -45.05 10.83 21.67 0.23 -44.82 16 10 Si 0.98 42.32 29.57 68.60 2.03 44.35 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 13 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 14 C 0.11 4.49 2.02 45.00 0.09 4.58 16 15 C -0.18 -5.44 7.77 30.62 0.24 -5.20 16 16 C -0.17 -6.31 9.62 30.62 0.29 -6.02 16 17 C -0.13 -3.67 7.17 30.62 0.22 -3.45 16 18 C 0.03 1.10 7.35 30.62 0.22 1.32 16 19 H 0.13 4.42 7.80 -2.39 -0.02 4.40 16 20 F -0.18 -5.84 16.95 44.97 0.76 -5.08 16 21 H 0.08 2.61 4.69 -2.39 -0.01 2.60 16 22 H 0.09 2.31 7.83 -2.39 -0.02 2.29 16 23 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.27 13.09 8.32 -92.71 -0.77 12.32 16 25 H 0.10 4.54 6.64 -2.39 -0.02 4.53 16 26 H 0.10 3.00 4.99 -2.39 -0.01 2.99 16 27 H 0.13 3.00 8.14 -2.38 -0.02 2.98 16 28 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 29 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.15 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.11 3.03 7.43 -2.39 -0.02 3.01 16 Total: -1.00 -65.60 258.77 5.76 -59.84 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 1.14 Total: 16.87 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 3.44 Total: -11.24 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -1.56 Total: -68.00 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.05 Total: -36.74 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.76 Total: -5.08 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -65.60 5.76 -59.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706784893.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.217 kcal (2) G-P(sol) polarization free energy of solvation -65.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds