Wall clock time and date at job start Mon Mar 30 2020 03:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.08995 * 109.47714 * 2 1 4 4 C 1.50702 * 109.47092 * 239.99907 * 2 1 3 5 5 H 1.08001 * 120.00215 * 245.60359 * 4 2 1 6 6 C 1.37874 * 119.99969 * 65.59586 * 4 2 1 7 7 N 1.31519 * 119.99946 * 185.28407 * 6 4 2 8 8 Si 1.86793 * 120.00051 * 5.28802 * 6 4 2 9 9 H 1.48504 * 109.47082 * 269.99866 * 8 6 4 10 10 H 1.48508 * 109.47031 * 29.99874 * 8 6 4 11 11 H 1.48501 * 109.47391 * 149.99711 * 8 6 4 12 12 N 1.46908 * 109.47134 * 120.00191 * 2 1 3 13 13 C 1.49849 * 110.99645 * 59.12939 * 12 2 1 14 14 C 1.51906 * 102.34716 * 212.72918 * 13 12 2 15 15 H 1.09004 * 109.64105 * 289.96394 * 14 13 12 16 16 C 1.51253 * 121.84855 * 160.73641 * 14 13 12 17 17 S 1.84408 * 102.72484 * 211.02019 * 16 14 13 18 18 C 1.84817 * 97.03032 * 7.08464 * 17 16 14 19 19 C 1.52308 * 100.12141 * 24.38178 * 18 17 16 20 20 H 1.09007 * 109.69457 * 69.58551 * 19 18 17 21 21 C 1.49458 * 110.99549 * 299.07186 * 12 2 1 22 22 H 1.08997 * 109.47979 * 174.60053 * 1 2 3 23 23 H 1.09005 * 109.46925 * 294.60453 * 1 2 3 24 24 H 1.09006 * 109.47141 * 54.59688 * 1 2 3 25 25 H 0.96994 * 120.00099 * 355.00258 * 7 6 4 26 26 H 1.08999 * 110.83270 * 330.94610 * 13 12 2 27 27 H 1.09003 * 110.83161 * 94.52258 * 13 12 2 28 28 H 1.09004 * 110.75983 * 329.32733 * 16 14 13 29 29 H 1.09004 * 110.76021 * 92.52463 * 16 14 13 30 30 H 1.08997 * 111.28143 * 266.66469 * 18 17 16 31 31 H 1.08998 * 111.27556 * 142.10378 * 18 17 16 32 32 H 1.09007 * 110.33251 * 235.35520 * 21 12 2 33 33 H 1.08998 * 110.33778 * 357.59201 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5765 -1.6383 -1.1340 6 6 1.7969 -0.1760 -2.4794 7 7 2.1429 -0.8457 -3.5571 8 14 0.9867 1.4994 -2.6409 9 1 -0.4873 1.3320 -2.7080 10 1 1.3371 2.3341 -1.4637 11 1 1.4664 2.1639 -3.8793 12 7 2.0196 -0.6926 1.1995 13 6 1.5218 -2.1052 1.2446 14 6 1.3695 -2.3484 2.7364 15 1 2.3539 -2.4004 3.2015 16 6 0.5040 -3.4640 3.2789 17 16 -0.0901 -2.7739 4.8825 18 6 0.5925 -1.0705 4.6625 19 6 0.6693 -1.0072 3.1427 20 1 -0.3370 -0.9701 2.7252 21 6 1.5589 -0.0019 2.4422 22 1 -0.3635 -1.0230 -0.0967 23 1 -0.3633 0.4279 0.9344 24 1 -0.3634 0.5954 -0.8377 25 1 2.6283 -1.6813 -3.4739 26 1 0.5612 -2.1942 0.7373 27 1 2.2538 -2.7882 0.8134 28 1 -0.3334 -3.6634 2.6102 29 1 1.0929 -4.3673 3.4382 30 1 1.5810 -0.9793 5.1126 31 1 -0.0899 -0.3171 5.0559 32 1 2.4112 0.2530 3.0721 33 1 0.9921 0.8942 2.1897 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711562793.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:49 Heat of formation + Delta-G solvation = 14.429789 kcal Electronic energy + Delta-G solvation = -14501.133407 eV Core-core repulsion = 12267.109700 eV Total energy + Delta-G solvation = -2234.023708 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.69042 -35.04182 -32.30785 -30.78825 -29.58963 -26.41921 -25.49933 -24.22726 -20.90688 -20.20514 -19.19906 -17.43520 -16.21613 -15.88960 -15.15145 -14.56314 -14.28180 -13.60176 -13.40477 -12.93327 -12.44328 -12.33294 -12.01851 -11.74173 -11.70306 -11.46337 -11.25224 -10.96415 -10.70558 -10.55220 -10.25685 -10.00340 -9.76255 -9.65110 -8.74476 -8.44397 -7.80304 -7.48566 -6.45396 -4.09354 1.76846 2.22967 3.32831 3.39757 3.54526 4.42891 4.44970 4.46955 4.63853 5.05334 5.15536 5.25639 5.27547 5.37378 5.45563 5.59665 5.65385 5.78373 5.94857 6.03424 6.10798 6.22929 6.35095 6.38809 6.44610 6.56091 6.78431 7.09871 7.51668 7.87442 8.17354 8.39715 8.92381 9.60160 10.95497 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.052633 B = 0.007466 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.855630 B = 3749.500730 C = 3978.383029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.172 3.828 3 H 0.041 0.959 4 C -0.579 4.579 5 H 0.063 0.937 6 C 0.026 3.974 7 N -0.914 5.914 8 Si 1.055 2.945 9 H -0.286 1.286 10 H -0.280 1.280 11 H -0.289 1.289 12 N -0.507 5.507 13 C 0.073 3.927 14 C -0.121 4.121 15 H 0.086 0.914 16 C -0.043 4.043 17 S -0.323 6.323 18 C -0.042 4.042 19 C -0.131 4.131 20 H 0.085 0.915 21 C 0.052 3.948 22 H 0.053 0.947 23 H 0.028 0.972 24 H 0.047 0.953 25 H 0.267 0.733 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.658 -0.461 13.876 14.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.064 3.936 3 H 0.059 0.941 4 C -0.618 4.618 5 H 0.081 0.919 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.885 3.115 9 H -0.213 1.213 10 H -0.206 1.206 11 H -0.216 1.216 12 N -0.230 5.230 13 C -0.055 4.055 14 C -0.141 4.141 15 H 0.105 0.895 16 C -0.192 4.192 17 S -0.096 6.096 18 C -0.190 4.190 19 C -0.152 4.152 20 H 0.104 0.896 21 C -0.078 4.078 22 H 0.072 0.928 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.313 0.116 13.658 14.324 hybrid contribution 0.222 -0.666 0.240 0.742 sum -4.091 -0.550 13.898 14.498 Atomic orbital electron populations 1.22835 1.01609 1.01050 0.98872 1.20012 0.88957 0.95544 0.89122 0.94078 1.22004 1.39253 1.10175 0.90343 0.91884 1.25694 0.96667 1.03454 0.91985 1.70809 1.37154 1.16734 1.30212 0.83852 0.76107 0.75867 0.75642 1.21305 1.20635 1.21592 1.65180 1.55930 1.00709 1.01213 1.22389 1.00296 0.91777 0.91087 1.22518 0.99592 0.92444 0.99588 0.89549 1.23253 1.01938 0.99984 0.93995 1.87818 1.76257 1.15077 1.30422 1.23601 1.03690 0.93674 0.98084 1.22967 1.01320 0.97636 0.93245 0.89648 1.22422 0.96606 0.95920 0.92828 0.92837 0.95308 0.93379 0.92274 0.92200 0.90413 0.88937 0.88460 0.88909 0.88156 0.91021 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.85 8.15 37.15 0.30 -3.55 16 2 C 0.17 3.95 1.82 -68.86 -0.13 3.82 16 3 H 0.04 0.99 6.63 -51.93 -0.34 0.65 16 4 C -0.58 -15.80 8.53 -34.44 -0.29 -16.09 16 5 H 0.06 1.86 7.42 -52.49 -0.39 1.47 16 6 C 0.03 0.74 5.43 -17.82 -0.10 0.65 16 7 N -0.91 -27.80 13.70 55.43 0.76 -27.04 16 8 Si 1.06 25.14 25.31 -169.99 -4.30 20.84 16 9 H -0.29 -6.50 6.81 56.52 0.39 -6.12 16 10 H -0.28 -6.21 6.35 56.52 0.36 -5.85 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 N -0.51 -10.11 5.29 -224.88 -1.19 -11.30 16 13 C 0.07 1.33 5.25 -2.73 -0.01 1.31 16 14 C -0.12 -1.74 2.56 -90.08 -0.23 -1.97 16 15 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 16 C -0.04 -0.56 7.16 36.28 0.26 -0.30 16 17 S -0.32 -4.30 23.30 -107.50 -2.50 -6.81 16 18 C -0.04 -0.50 7.19 36.80 0.26 -0.23 16 19 C -0.13 -1.82 2.47 -89.80 -0.22 -2.04 16 20 H 0.09 1.28 7.70 -51.93 -0.40 0.88 16 21 C 0.05 0.83 5.92 -3.20 -0.02 0.81 16 22 H 0.05 1.12 6.20 -51.93 -0.32 0.80 16 23 H 0.03 0.51 5.91 -51.93 -0.31 0.21 16 24 H 0.05 1.03 4.45 -51.93 -0.23 0.80 16 25 H 0.27 8.10 8.72 -40.82 -0.36 7.75 16 26 H 0.06 1.15 5.66 -51.93 -0.29 0.85 16 27 H 0.08 1.49 7.91 -51.93 -0.41 1.08 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.06 0.98 6.46 -51.93 -0.34 0.65 16 LS Contribution 258.26 15.07 3.89 3.89 Total: -1.00 -28.95 258.26 -8.30 -37.25 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -4.78 Total: 0.76 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -0.17 Total: -17.60 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.43 Total: -38.34 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -4.30 Total: 20.84 kcal Atomic # 16 Polarization: -4.30 SS G_CDS: -2.50 Total: -6.81 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.95 -8.30 -37.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711562793.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.680 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds