Wall clock time and date at job start Mon Mar 30 2020 03:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.08995 * 109.47714 * 2 1 4 4 C 1.50702 * 109.47092 * 239.99907 * 2 1 3 5 5 H 1.08001 * 120.00215 * 245.60359 * 4 2 1 6 6 C 1.37874 * 119.99969 * 65.59586 * 4 2 1 7 7 N 1.31519 * 119.99946 * 185.28407 * 6 4 2 8 8 Si 1.86793 * 120.00051 * 5.28802 * 6 4 2 9 9 H 1.48504 * 109.47082 * 269.99866 * 8 6 4 10 10 H 1.48508 * 109.47031 * 29.99874 * 8 6 4 11 11 H 1.48501 * 109.47391 * 149.99711 * 8 6 4 12 12 N 1.46908 * 109.47134 * 120.00191 * 2 1 3 13 13 C 1.49849 * 110.99645 * 59.12939 * 12 2 1 14 14 C 1.51906 * 102.34716 * 212.72918 * 13 12 2 15 15 H 1.09004 * 109.64105 * 289.96394 * 14 13 12 16 16 C 1.51253 * 121.84855 * 160.73641 * 14 13 12 17 17 S 1.84408 * 102.72484 * 211.02019 * 16 14 13 18 18 C 1.84817 * 97.03032 * 7.08464 * 17 16 14 19 19 C 1.52308 * 100.12141 * 24.38178 * 18 17 16 20 20 H 1.09007 * 109.69457 * 69.58551 * 19 18 17 21 21 C 1.49458 * 110.99549 * 299.07186 * 12 2 1 22 22 H 1.08997 * 109.47979 * 174.60053 * 1 2 3 23 23 H 1.09005 * 109.46925 * 294.60453 * 1 2 3 24 24 H 1.09006 * 109.47141 * 54.59688 * 1 2 3 25 25 H 0.96994 * 120.00099 * 355.00258 * 7 6 4 26 26 H 1.08999 * 110.83270 * 330.94610 * 13 12 2 27 27 H 1.09003 * 110.83161 * 94.52258 * 13 12 2 28 28 H 1.09004 * 110.75983 * 329.32733 * 16 14 13 29 29 H 1.09004 * 110.76021 * 92.52463 * 16 14 13 30 30 H 1.08997 * 111.28143 * 266.66469 * 18 17 16 31 31 H 1.08998 * 111.27556 * 142.10378 * 18 17 16 32 32 H 1.09007 * 110.33251 * 235.35520 * 21 12 2 33 33 H 1.08998 * 110.33778 * 357.59201 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5765 -1.6383 -1.1340 6 6 1.7969 -0.1760 -2.4794 7 7 2.1429 -0.8457 -3.5571 8 14 0.9867 1.4994 -2.6409 9 1 -0.4873 1.3320 -2.7080 10 1 1.3371 2.3341 -1.4637 11 1 1.4664 2.1639 -3.8793 12 7 2.0196 -0.6926 1.1995 13 6 1.5218 -2.1052 1.2446 14 6 1.3695 -2.3484 2.7364 15 1 2.3539 -2.4004 3.2015 16 6 0.5040 -3.4640 3.2789 17 16 -0.0901 -2.7739 4.8825 18 6 0.5925 -1.0705 4.6625 19 6 0.6693 -1.0072 3.1427 20 1 -0.3370 -0.9701 2.7252 21 6 1.5589 -0.0019 2.4422 22 1 -0.3635 -1.0230 -0.0967 23 1 -0.3633 0.4279 0.9344 24 1 -0.3634 0.5954 -0.8377 25 1 2.6283 -1.6813 -3.4739 26 1 0.5612 -2.1942 0.7373 27 1 2.2538 -2.7882 0.8134 28 1 -0.3334 -3.6634 2.6102 29 1 1.0929 -4.3673 3.4382 30 1 1.5810 -0.9793 5.1126 31 1 -0.0899 -0.3171 5.0559 32 1 2.4112 0.2530 3.0721 33 1 0.9921 0.8942 2.1897 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711562793.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:49 Heat of formation + Delta-G solvation = -5.212013 kcal Electronic energy + Delta-G solvation = -14501.985140 eV Core-core repulsion = 12267.109700 eV Total energy + Delta-G solvation = -2234.875440 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.04522 -36.65146 -34.27239 -31.93701 -31.22123 -27.69988 -27.07894 -25.98063 -22.31890 -21.42752 -20.89204 -19.42928 -17.32243 -17.16507 -16.73886 -15.94413 -15.58686 -15.24344 -14.84552 -14.51939 -13.93402 -13.71820 -13.52605 -13.24413 -13.11792 -12.92924 -12.54431 -12.42402 -12.22333 -11.97483 -11.68762 -11.60098 -11.54671 -10.86378 -10.80041 -10.57466 -9.07284 -8.78558 -8.70685 -6.35254 0.76389 1.21645 1.42084 1.52640 1.68434 2.47925 3.04457 3.14266 3.30782 3.52713 3.94187 4.04995 4.15213 4.18830 4.32498 4.38420 4.50087 4.58073 4.63563 4.65406 4.70890 4.75494 4.81623 4.95383 5.03828 5.06608 5.25803 5.46826 5.72009 6.05040 6.16904 6.40873 6.69428 7.44090 8.68735 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.052633 B = 0.007466 C = 0.007036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.855630 B = 3749.500730 C = 3978.383029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.175 3.825 3 H 0.038 0.962 4 C -0.575 4.575 5 H 0.023 0.977 6 C -0.028 4.028 7 N -0.949 5.949 8 Si 1.092 2.908 9 H -0.266 1.266 10 H -0.250 1.250 11 H -0.294 1.294 12 N -0.530 5.530 13 C 0.076 3.924 14 C -0.111 4.111 15 H 0.088 0.912 16 C -0.039 4.039 17 S -0.339 6.339 18 C -0.030 4.030 19 C -0.119 4.119 20 H 0.079 0.921 21 C 0.054 3.946 22 H 0.044 0.956 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.250 0.750 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 1.048 16.321 17.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.066 3.934 3 H 0.056 0.944 4 C -0.614 4.614 5 H 0.041 0.959 6 C -0.225 4.225 7 N -0.587 5.587 8 Si 0.915 3.085 9 H -0.192 1.192 10 H -0.174 1.174 11 H -0.221 1.221 12 N -0.254 5.254 13 C -0.053 4.053 14 C -0.131 4.131 15 H 0.107 0.893 16 C -0.187 4.187 17 S -0.111 6.111 18 C -0.178 4.178 19 C -0.140 4.140 20 H 0.097 0.903 21 C -0.075 4.075 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.110 0.890 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.139 0.861 32 H 0.107 0.893 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.491 1.610 16.147 17.131 hybrid contribution 0.670 -1.226 -0.470 1.474 sum -4.821 0.385 15.677 16.406 Atomic orbital electron populations 1.22674 0.99586 1.00849 1.00477 1.19793 0.90314 0.94739 0.88596 0.94401 1.22220 1.37771 1.08725 0.92677 0.95896 1.27133 0.97025 1.06464 0.91837 1.70943 1.39424 1.16847 1.31477 0.83425 0.76448 0.72075 0.76560 1.19166 1.17404 1.22121 1.65013 1.56950 1.01541 1.01874 1.22232 0.98624 0.90762 0.93718 1.22353 1.00295 0.93874 0.96572 0.89329 1.23221 1.01768 0.99902 0.93833 1.87947 1.76555 1.16359 1.30255 1.23638 1.05020 0.92983 0.96171 1.22831 1.00261 0.96138 0.94772 0.90307 1.22469 0.97812 0.96076 0.91189 0.93669 0.91920 0.93807 0.94108 0.93577 0.92852 0.88981 0.87163 0.87459 0.86080 0.89335 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.00 8.15 71.98 0.59 -6.41 16 2 C 0.17 7.83 1.82 44.16 0.08 7.91 16 3 H 0.04 1.74 6.63 -2.39 -0.02 1.73 16 4 C -0.58 -32.13 8.53 25.60 0.22 -31.91 16 5 H 0.02 1.42 7.42 -2.91 -0.02 1.40 16 6 C -0.03 -1.61 5.43 84.65 0.46 -1.15 16 7 N -0.95 -59.79 13.70 21.45 0.29 -59.50 16 8 Si 1.09 49.75 25.31 68.60 1.74 51.49 16 9 H -0.27 -11.22 6.81 99.48 0.68 -10.54 16 10 H -0.25 -10.07 6.35 99.48 0.63 -9.44 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 12 N -0.53 -20.60 5.29 -865.38 -4.57 -25.18 16 13 C 0.08 2.74 5.25 85.37 0.45 3.19 16 14 C -0.11 -2.99 2.56 -10.44 -0.03 -3.01 16 15 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 16 C -0.04 -0.92 7.16 71.41 0.51 -0.41 16 17 S -0.34 -8.02 23.30 -56.49 -1.32 -9.34 16 18 C -0.03 -0.59 7.19 71.75 0.52 -0.08 16 19 C -0.12 -2.93 2.47 -10.26 -0.03 -2.96 16 20 H 0.08 2.09 7.70 -2.38 -0.02 2.07 16 21 C 0.05 1.53 5.92 85.28 0.51 2.04 16 22 H 0.04 1.84 6.20 -2.39 -0.01 1.82 16 23 H 0.06 2.04 5.91 -2.38 -0.01 2.02 16 24 H 0.04 1.76 4.45 -2.38 -0.01 1.75 16 25 H 0.25 16.04 8.72 -92.71 -0.81 15.23 16 26 H 0.05 1.78 5.66 -2.39 -0.01 1.77 16 27 H 0.05 2.14 7.91 -2.39 -0.02 2.12 16 28 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 30 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.07 1.90 6.46 -2.39 -0.02 1.88 16 Total: -1.00 -63.88 258.26 0.36 -63.52 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.95 Total: 11.80 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 3.27 Total: -32.79 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -4.28 Total: -84.67 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 1.74 Total: 51.49 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.32 Total: -9.34 kcal Total: -63.88 0.36 -63.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711562793.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.303 kcal (2) G-P(sol) polarization free energy of solvation -63.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds