Wall clock time and date at job start Mon Mar 30 2020 02:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.47083 * 2 1 4 4 C 1.34228 * 116.99769 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00278 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99666 * 180.02562 * 4 3 2 7 7 C 1.50697 * 110.43202 * 306.19980 * 6 4 3 8 8 H 1.08000 * 120.00638 * 125.02432 * 7 6 4 9 9 C 1.37883 * 119.99888 * 305.02517 * 7 6 4 10 10 N 1.31506 * 120.00182 * 354.40404 * 9 7 6 11 11 Si 1.86808 * 119.99935 * 174.40346 * 9 7 6 12 12 H 1.48502 * 109.46915 * 90.00042 * 11 9 7 13 13 H 1.48499 * 109.47003 * 329.99994 * 11 9 7 14 14 H 1.48495 * 109.46858 * 209.99920 * 11 9 7 15 15 C 1.54627 * 110.48353 * 183.66030 * 6 4 3 16 16 C 1.54482 * 101.76229 * 216.38878 * 15 6 4 17 17 N 1.46763 * 105.47443 * 25.41500 * 16 15 6 18 18 C 1.34749 * 111.35327 * 343.01765 * 17 16 15 19 19 O 1.21272 * 125.12312 * 180.38802 * 18 17 16 20 20 H 1.08993 * 109.47582 * 300.00492 * 1 2 3 21 21 H 1.09005 * 109.47268 * 60.00084 * 1 2 3 22 22 H 1.09002 * 109.47036 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47132 * 240.00039 * 2 1 3 24 24 H 1.08997 * 109.46988 * 119.99764 * 2 1 3 25 25 H 0.97007 * 120.00261 * 354.64260 * 10 9 7 26 26 H 1.08995 * 110.97208 * 334.50572 * 15 6 4 27 27 H 1.08999 * 110.97120 * 98.27317 * 15 6 4 28 28 H 1.08993 * 110.24830 * 144.41605 * 16 15 6 29 29 H 1.09000 * 110.24488 * 266.41579 * 16 15 6 30 30 H 0.96999 * 124.35368 * 162.98442 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 6 3.3505 3.7431 -1.1388 8 1 2.8699 4.6901 -0.9429 9 6 3.4425 3.2710 -2.4310 10 7 4.1226 2.1741 -2.6836 11 14 2.6009 4.1895 -3.8231 12 1 3.5354 5.1958 -4.3883 13 1 1.3905 4.8750 -3.3033 14 1 2.2080 3.2279 -4.8842 15 6 5.4633 2.8851 -0.0932 16 6 5.8738 4.0684 0.8110 17 7 4.7631 4.2443 1.7541 18 6 3.6488 3.6224 1.3212 19 8 2.5846 3.6126 1.9027 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 4.6236 1.7402 -1.9753 26 1 5.8461 1.9431 0.2993 27 1 5.7977 3.0434 -1.1185 28 1 6.7915 3.8312 1.3492 29 1 6.0082 4.9704 0.2140 30 1 4.8230 4.7439 2.5834 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713167171.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:06 Heat of formation + Delta-G solvation = -129.227346 kcal Electronic energy + Delta-G solvation = -16753.735595 eV Core-core repulsion = 13934.896481 eV Total energy + Delta-G solvation = -2818.839114 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.25888 -38.61208 -36.03663 -35.24871 -33.53117 -31.08254 -29.93609 -27.55352 -24.32798 -23.19886 -21.47349 -20.86934 -19.24928 -17.82448 -16.75876 -16.36935 -15.56609 -15.15745 -14.85640 -13.94852 -13.63088 -13.40095 -13.18916 -12.65794 -12.49696 -12.35234 -11.75199 -11.62430 -11.23996 -11.15553 -10.99331 -10.80212 -10.57988 -10.18904 -9.73777 -9.67957 -8.95661 -8.86829 -8.59168 -8.48168 -6.60459 -4.43787 3.21655 3.30188 3.36450 3.43088 3.56658 3.72118 4.12541 4.37848 5.00703 5.27753 5.44684 5.49930 5.50638 5.59874 5.78119 5.88039 5.96764 6.14837 6.27507 6.32248 6.46730 6.63775 6.88277 7.38283 7.41507 7.52115 7.63787 8.12584 8.50895 8.89351 8.95608 9.26198 10.74747 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.017200 B = 0.016921 C = 0.011000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.474495 B = 1654.315769 C = 2544.890453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 O -0.328 6.328 4 C 0.497 3.503 5 O -0.540 6.540 6 C 0.038 3.962 7 C -0.580 4.580 8 H 0.068 0.932 9 C 0.031 3.969 10 N -0.894 5.894 11 Si 1.075 2.925 12 H -0.284 1.284 13 H -0.283 1.283 14 H -0.281 1.281 15 C -0.125 4.125 16 C 0.115 3.885 17 N -0.739 5.739 18 C 0.542 3.458 19 O -0.533 6.533 20 H 0.063 0.937 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.283 0.717 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.638 0.870 3.975 4.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 O -0.243 6.243 4 C 0.341 3.659 5 O -0.430 6.430 6 C 0.032 3.968 7 C -0.617 4.617 8 H 0.086 0.914 9 C -0.176 4.176 10 N -0.529 5.529 11 Si 0.902 3.098 12 H -0.210 1.210 13 H -0.209 1.209 14 H -0.206 1.206 15 C -0.163 4.163 16 C -0.010 4.010 17 N -0.395 5.395 18 C 0.329 3.671 19 O -0.409 6.409 20 H 0.082 0.918 21 H 0.085 0.915 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.073 0.402 2.550 2.583 hybrid contribution 0.509 0.083 1.930 1.998 sum 0.435 0.485 4.481 4.528 Atomic orbital electron populations 1.21732 0.93426 1.01814 1.03468 1.22835 0.95002 0.82478 1.01401 1.86648 1.24926 1.29472 1.83284 1.24146 0.80087 0.92390 0.69261 1.90499 1.60678 1.43618 1.48245 1.19013 0.93910 0.88803 0.95025 1.21358 1.42484 1.07787 0.90064 0.91370 1.26007 0.95866 0.96110 0.99612 1.70735 1.26909 1.16840 1.38454 0.83452 0.76148 0.75355 0.74876 1.21029 1.20912 1.20587 1.22837 0.95023 0.97068 1.01365 1.21970 0.88591 0.99508 0.90919 1.46172 1.13066 1.55888 1.24348 1.20754 0.82779 0.77913 0.85621 1.90648 1.25929 1.62206 1.62154 0.91766 0.91480 0.91166 0.91871 0.92545 0.90372 0.90746 0.88374 0.91442 0.91142 0.76221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 10.29 37.16 0.38 -1.98 16 2 C 0.06 1.17 6.19 37.16 0.23 1.40 16 3 O -0.33 -8.42 9.94 -39.33 -0.39 -8.81 16 4 C 0.50 13.18 4.96 36.01 0.18 13.36 16 5 O -0.54 -14.50 14.48 -18.75 -0.27 -14.77 16 6 C 0.04 0.94 0.50 -156.82 -0.08 0.87 16 7 C -0.58 -15.59 7.90 -34.44 -0.27 -15.86 16 8 H 0.07 1.86 7.77 -52.49 -0.41 1.46 16 9 C 0.03 0.84 5.00 -17.82 -0.09 0.76 16 10 N -0.89 -25.51 12.78 55.43 0.71 -24.81 16 11 Si 1.08 24.05 29.91 -169.99 -5.08 18.96 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 15 C -0.12 -2.69 4.98 -25.10 -0.13 -2.82 16 16 C 0.11 1.94 7.78 -3.12 -0.02 1.92 16 17 N -0.74 -13.64 6.25 -59.12 -0.37 -14.01 16 18 C 0.54 12.91 7.15 -10.71 -0.08 12.83 16 19 O -0.53 -14.05 17.75 5.56 0.10 -13.95 16 20 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 21 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 24 H 0.06 1.08 8.13 -51.93 -0.42 0.66 16 25 H 0.28 8.12 4.36 -40.82 -0.18 7.94 16 26 H 0.07 1.60 6.96 -51.93 -0.36 1.24 16 27 H 0.10 2.24 6.58 -51.93 -0.34 1.90 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.40 6.03 8.96 -40.82 -0.37 5.66 16 LS Contribution 258.80 15.07 3.90 3.90 Total: -1.00 -32.91 258.80 -4.69 -37.60 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -3.41 Total: 5.41 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 0.13 Total: 10.47 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.34 Total: -38.82 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.56 Total: -37.53 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.08 Total: 18.96 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.91 -4.69 -37.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713167171.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.629 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds