Wall clock time and date at job start Mon Mar 30 2020 03:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99737 * 2 1 4 4 H 1.48499 * 109.47214 * 239.99877 * 3 2 1 5 5 H 1.48505 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47069 * 119.99635 * 3 2 1 7 7 C 1.38808 * 120.00488 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99995 * 160.38561 * 7 2 1 9 9 N 1.36938 * 119.99647 * 340.38460 * 7 2 1 10 10 C 1.46501 * 120.00368 * 320.55145 * 9 7 2 11 11 C 1.52998 * 109.47215 * 270.00496 * 10 9 7 12 12 H 1.08998 * 110.45160 * 60.92975 * 11 10 9 13 13 C 1.54272 * 110.40341 * 183.31688 * 11 10 9 14 14 C 1.54386 * 109.00788 * 146.75383 * 13 11 10 15 15 C 1.55138 * 106.63193 * 312.80876 * 14 13 11 16 16 S 1.83103 * 110.39996 * 298.54480 * 11 10 9 17 17 C 1.46507 * 119.99915 * 140.55484 * 9 7 2 18 18 C 1.53002 * 117.49402 * 3.26951 * 17 9 7 19 19 C 1.52996 * 117.49565 * 294.61151 * 17 9 7 20 20 H 0.96997 * 120.00304 * 355.02487 * 1 2 3 21 21 H 1.08995 * 109.46982 * 149.99904 * 10 9 7 22 22 H 1.09005 * 109.46676 * 30.00220 * 10 9 7 23 23 H 1.09005 * 109.60910 * 266.66529 * 13 11 10 24 24 H 1.09004 * 109.60571 * 26.81952 * 13 11 10 25 25 H 1.08992 * 110.22922 * 193.46917 * 14 13 11 26 26 H 1.09001 * 109.97784 * 72.01566 * 14 13 11 27 27 H 1.09000 * 110.86013 * 283.79247 * 15 14 13 28 28 H 1.09002 * 110.85573 * 160.34828 * 15 14 13 29 29 H 1.08990 * 115.55055 * 148.93941 * 17 9 7 30 30 H 1.08998 * 117.50525 * 0.02562 * 18 17 9 31 31 H 1.08998 * 117.49426 * 145.02612 * 18 17 9 32 32 H 1.09001 * 117.49612 * 214.98084 * 19 17 9 33 33 H 1.08997 * 117.50354 * 359.97438 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0433 -1.2292 -0.3134 9 7 1.3852 -2.3534 0.3992 10 6 0.4614 -2.3296 1.5359 11 6 1.2343 -2.6053 2.8272 12 1 1.9926 -1.8391 2.9881 13 6 0.2690 -2.6673 4.0290 14 6 0.8056 -3.6909 5.0526 15 6 1.1844 -4.9639 4.2508 16 16 2.0062 -4.2646 2.7671 17 6 1.6405 -3.6091 -0.3111 18 6 2.6727 -3.5848 -1.4402 19 6 1.1821 -3.7025 -1.7677 20 1 -0.4850 0.8368 0.0728 21 1 -0.3026 -3.0948 1.3992 22 1 -0.0126 -1.3499 1.5983 23 1 0.2026 -1.6846 4.4960 24 1 -0.7197 -2.9751 3.6885 25 1 0.0359 -3.9287 5.7868 26 1 1.6870 -3.2901 5.5531 27 1 0.2934 -5.5264 3.9720 28 1 1.8742 -5.5889 4.8181 29 1 1.5786 -4.5129 0.2949 30 1 3.1622 -2.6347 -1.6543 31 1 3.2896 -4.4729 -1.5772 32 1 0.8189 -4.6679 -2.1201 33 1 0.6902 -2.8299 -2.1976 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715808756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:06 Heat of formation + Delta-G solvation = 36.268498 kcal Electronic energy + Delta-G solvation = -14291.633219 eV Core-core repulsion = 12058.556508 eV Total energy + Delta-G solvation = -2233.076710 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.08559 -35.71483 -33.36727 -31.19078 -28.91787 -25.70051 -24.07941 -21.89254 -21.20345 -20.29186 -19.64260 -16.45243 -15.91434 -15.34014 -15.07352 -14.55460 -13.82909 -13.68323 -13.19494 -12.61974 -12.12179 -11.97740 -11.67756 -11.32644 -11.16708 -10.98150 -10.73381 -10.57426 -10.50051 -10.28441 -9.97300 -9.76002 -9.48918 -9.30884 -8.96753 -8.43239 -7.05204 -6.46097 -5.76166 -3.43185 2.42816 3.10341 3.35161 3.40913 3.43517 4.44734 4.89801 4.98043 5.08275 5.22611 5.34449 5.37575 5.63699 5.67791 5.78206 5.94351 6.06670 6.16287 6.22125 6.26428 6.41780 6.44234 6.52913 6.63472 6.83504 6.99857 7.22540 7.34774 7.49921 7.81509 8.52098 9.17499 9.79043 10.39191 11.17275 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.011044 C = 0.008594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.732974 B = 2534.725452 C = 3257.429437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.013 3.987 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.062 0.938 9 N -0.547 5.547 10 C 0.168 3.832 11 C -0.046 4.046 12 H 0.093 0.907 13 C -0.126 4.126 14 C -0.124 4.124 15 C -0.090 4.090 16 S -0.287 6.287 17 C 0.125 3.875 18 C -0.198 4.198 19 C -0.225 4.225 20 H 0.255 0.745 21 H 0.035 0.965 22 H 0.103 0.897 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.086 -6.503 7.720 10.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.187 4.187 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.080 0.920 9 N -0.263 5.263 10 C 0.040 3.960 11 C -0.177 4.177 12 H 0.112 0.888 13 C -0.166 4.166 14 C -0.163 4.163 15 C -0.238 4.238 16 S -0.061 6.061 17 C 0.016 3.984 18 C -0.236 4.236 19 C -0.266 4.266 20 H 0.065 0.935 21 H 0.054 0.946 22 H 0.120 0.880 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.748 -6.815 6.908 9.733 hybrid contribution -0.330 1.431 0.708 1.630 sum 0.418 -5.385 7.616 9.337 Atomic orbital electron populations 1.70037 1.05453 1.26203 1.51109 1.25224 0.95010 0.98731 0.99772 0.86499 0.79250 0.83439 0.78411 1.20636 1.21593 1.20833 1.19023 0.93296 0.85173 1.41066 0.91998 1.43276 1.50413 1.03254 1.29380 1.20929 0.90200 1.02482 0.82430 1.24865 0.99795 0.92897 1.00121 0.88837 1.22473 0.99790 0.99639 0.94678 1.22613 1.01439 0.94047 0.98185 1.24194 1.02583 0.99628 0.97383 1.87689 1.62762 1.18629 1.37013 1.21512 0.99737 0.91079 0.86113 1.22992 0.92088 1.01544 1.06961 1.23352 0.96843 1.00702 1.05671 0.93532 0.94630 0.87973 0.90599 0.90980 0.90861 0.90989 0.90039 0.89229 0.87825 0.88771 0.90966 0.91408 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.83 11.49 55.49 0.64 -24.20 16 2 C 0.01 0.35 4.98 -17.43 -0.09 0.26 16 3 Si 0.90 21.31 29.60 -169.99 -5.03 16.28 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.26 -6.89 8.47 -15.06 -0.13 -7.01 16 8 H 0.06 1.70 6.74 -52.49 -0.35 1.35 16 9 N -0.55 -13.56 2.62 -165.66 -0.43 -13.99 16 10 C 0.17 3.81 4.81 -4.04 -0.02 3.79 16 11 C -0.05 -0.89 3.54 -26.07 -0.09 -0.98 16 12 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 13 C -0.13 -1.92 5.95 -25.34 -0.15 -2.07 16 14 C -0.12 -1.58 6.51 -24.87 -0.16 -1.74 16 15 C -0.09 -1.22 7.36 38.29 0.28 -0.94 16 16 S -0.29 -5.24 20.08 -107.50 -2.16 -7.39 16 17 C 0.12 2.82 5.86 -67.93 -0.40 2.42 16 18 C -0.20 -4.21 9.80 -26.69 -0.26 -4.47 16 19 C -0.22 -4.89 10.36 -26.69 -0.28 -5.17 16 20 H 0.25 6.91 8.32 -40.82 -0.34 6.57 16 21 H 0.04 0.79 8.03 -51.93 -0.42 0.38 16 22 H 0.10 2.58 5.59 -51.93 -0.29 2.29 16 23 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.07 1.08 7.83 -51.93 -0.41 0.67 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.10 2.24 6.36 -51.93 -0.33 1.91 16 30 H 0.09 2.16 6.46 -51.93 -0.34 1.83 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.09 2.20 8.14 -51.93 -0.42 1.77 16 LS Contribution 275.34 15.07 4.15 4.15 Total: -1.00 -28.01 275.34 -9.20 -37.22 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.07 Total: 3.83 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -1.29 Total: -15.89 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.20 Total: -38.19 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -2.16 Total: -7.39 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.01 -9.20 -37.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715808756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.485 kcal (2) G-P(sol) polarization free energy of solvation -28.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds