Wall clock time and date at job start Mon Mar 30 2020 03:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99737 * 2 1 4 4 H 1.48499 * 109.47214 * 239.99877 * 3 2 1 5 5 H 1.48505 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47069 * 119.99635 * 3 2 1 7 7 C 1.38808 * 120.00488 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99995 * 160.38561 * 7 2 1 9 9 N 1.36938 * 119.99647 * 340.38460 * 7 2 1 10 10 C 1.46501 * 120.00368 * 320.55145 * 9 7 2 11 11 C 1.52998 * 109.47215 * 270.00496 * 10 9 7 12 12 H 1.08998 * 110.45160 * 60.92975 * 11 10 9 13 13 C 1.54272 * 110.40341 * 183.31688 * 11 10 9 14 14 C 1.54386 * 109.00788 * 146.75383 * 13 11 10 15 15 C 1.55138 * 106.63193 * 312.80876 * 14 13 11 16 16 S 1.83103 * 110.39996 * 298.54480 * 11 10 9 17 17 C 1.46507 * 119.99915 * 140.55484 * 9 7 2 18 18 C 1.53002 * 117.49402 * 3.26951 * 17 9 7 19 19 C 1.52996 * 117.49565 * 294.61151 * 17 9 7 20 20 H 0.96997 * 120.00304 * 355.02487 * 1 2 3 21 21 H 1.08995 * 109.46982 * 149.99904 * 10 9 7 22 22 H 1.09005 * 109.46676 * 30.00220 * 10 9 7 23 23 H 1.09005 * 109.60910 * 266.66529 * 13 11 10 24 24 H 1.09004 * 109.60571 * 26.81952 * 13 11 10 25 25 H 1.08992 * 110.22922 * 193.46917 * 14 13 11 26 26 H 1.09001 * 109.97784 * 72.01566 * 14 13 11 27 27 H 1.09000 * 110.86013 * 283.79247 * 15 14 13 28 28 H 1.09002 * 110.85573 * 160.34828 * 15 14 13 29 29 H 1.08990 * 115.55055 * 148.93941 * 17 9 7 30 30 H 1.08998 * 117.50525 * 0.02562 * 18 17 9 31 31 H 1.08998 * 117.49426 * 145.02612 * 18 17 9 32 32 H 1.09001 * 117.49612 * 214.98084 * 19 17 9 33 33 H 1.08997 * 117.50354 * 359.97438 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0433 -1.2292 -0.3134 9 7 1.3852 -2.3534 0.3992 10 6 0.4614 -2.3296 1.5359 11 6 1.2343 -2.6053 2.8272 12 1 1.9926 -1.8391 2.9881 13 6 0.2690 -2.6673 4.0290 14 6 0.8056 -3.6909 5.0526 15 6 1.1844 -4.9639 4.2508 16 16 2.0062 -4.2646 2.7671 17 6 1.6405 -3.6091 -0.3111 18 6 2.6727 -3.5848 -1.4402 19 6 1.1821 -3.7025 -1.7677 20 1 -0.4850 0.8368 0.0728 21 1 -0.3026 -3.0948 1.3992 22 1 -0.0126 -1.3499 1.5983 23 1 0.2026 -1.6846 4.4960 24 1 -0.7197 -2.9751 3.6885 25 1 0.0359 -3.9287 5.7868 26 1 1.6870 -3.2901 5.5531 27 1 0.2934 -5.5264 3.9720 28 1 1.8742 -5.5889 4.8181 29 1 1.5786 -4.5129 0.2949 30 1 3.1622 -2.6347 -1.6543 31 1 3.2896 -4.4729 -1.5772 32 1 0.8189 -4.6679 -2.1201 33 1 0.6902 -2.8299 -2.1976 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715808756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:05 Heat of formation + Delta-G solvation = 22.028536 kcal Electronic energy + Delta-G solvation = -14292.250710 eV Core-core repulsion = 12058.556508 eV Total energy + Delta-G solvation = -2233.694201 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.87081 -37.05808 -35.17556 -33.00320 -30.53064 -27.31522 -25.78179 -23.46581 -22.92142 -21.63547 -21.46311 -18.33241 -17.47886 -17.07360 -16.56435 -16.23522 -15.62188 -15.01900 -14.73244 -14.20203 -13.65941 -13.62268 -13.31807 -12.99384 -12.80372 -12.61567 -12.27579 -12.22081 -12.09204 -11.80327 -11.67256 -11.54080 -11.28588 -10.95789 -10.59761 -10.35654 -8.62044 -8.36078 -7.76264 -5.50890 1.11223 1.43550 1.44784 1.52063 1.75826 2.47631 3.14403 3.43160 3.45058 3.85423 3.95648 4.13523 4.28831 4.41497 4.44472 4.53663 4.61694 4.64994 4.76691 4.86637 4.92635 4.98933 5.02475 5.10201 5.21005 5.31950 5.43424 5.53967 5.58296 5.70947 6.46339 7.15492 7.83770 8.38391 9.09824 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.011044 C = 0.008594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.732974 B = 2534.725452 C = 3257.429437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.030 4.030 3 Si 0.952 3.048 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.262 4.262 8 H 0.050 0.950 9 N -0.562 5.562 10 C 0.174 3.826 11 C -0.038 4.038 12 H 0.065 0.935 13 C -0.124 4.124 14 C -0.115 4.115 15 C -0.072 4.072 16 S -0.335 6.335 17 C 0.110 3.890 18 C -0.187 4.187 19 C -0.220 4.220 20 H 0.253 0.747 21 H 0.032 0.968 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 -7.820 9.205 12.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.228 4.228 3 Si 0.780 3.220 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.392 4.392 8 H 0.068 0.932 9 N -0.279 5.279 10 C 0.046 3.954 11 C -0.169 4.169 12 H 0.084 0.916 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.220 4.220 16 S -0.109 6.109 17 C 0.002 3.998 18 C -0.225 4.225 19 C -0.261 4.261 20 H 0.062 0.938 21 H 0.051 0.949 22 H 0.091 0.909 23 H 0.101 0.899 24 H 0.093 0.907 25 H 0.126 0.874 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.931 -8.148 8.398 11.738 hybrid contribution -0.394 1.745 0.252 1.807 sum 0.536 -6.403 8.650 10.775 Atomic orbital electron populations 1.70150 1.06528 1.26577 1.52359 1.25829 0.95675 1.01249 1.00027 0.85597 0.78055 0.80033 0.78303 1.20574 1.21499 1.20371 1.19100 0.92942 0.86430 1.40728 0.93221 1.43447 1.50545 1.03387 1.30493 1.20779 0.90232 1.00716 0.83682 1.24484 0.99493 0.92974 0.99961 0.91624 1.22486 0.98830 1.01228 0.93784 1.22583 1.02559 0.92461 0.97693 1.24347 1.02935 1.00093 0.94604 1.87724 1.63688 1.18342 1.41108 1.21694 1.00878 0.90760 0.86504 1.22986 0.91998 1.01844 1.05674 1.23272 0.97122 1.00792 1.04874 0.93809 0.94937 0.90901 0.89908 0.90705 0.87354 0.90633 0.88735 0.86893 0.86562 0.90975 0.87718 0.88260 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.59 11.49 21.65 0.25 -52.34 16 2 C -0.03 -1.66 4.98 84.86 0.42 -1.24 16 3 Si 0.95 44.67 29.60 68.60 2.03 46.71 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.26 -14.46 8.47 84.03 0.71 -13.75 16 8 H 0.05 2.82 6.74 -2.91 -0.02 2.80 16 9 N -0.56 -28.44 2.62 -678.04 -1.77 -30.21 16 10 C 0.17 8.06 4.81 86.38 0.42 8.47 16 11 C -0.04 -1.48 3.54 31.03 0.11 -1.37 16 12 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 13 C -0.12 -3.55 5.95 31.50 0.19 -3.37 16 14 C -0.11 -2.48 6.51 31.80 0.21 -2.28 16 15 C -0.07 -1.70 7.36 72.71 0.54 -1.16 16 16 S -0.33 -11.79 20.08 -56.49 -1.13 -12.92 16 17 C 0.11 4.97 5.86 44.99 0.26 5.24 16 18 C -0.19 -7.84 9.80 30.62 0.30 -7.54 16 19 C -0.22 -9.48 10.36 30.62 0.32 -9.17 16 20 H 0.25 14.05 8.32 -92.71 -0.77 13.28 16 21 H 0.03 1.48 8.03 -2.39 -0.02 1.46 16 22 H 0.07 3.83 5.59 -2.38 -0.01 3.82 16 23 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 24 H 0.07 2.11 7.83 -2.38 -0.02 2.09 16 25 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.12 4.94 6.36 -2.39 -0.02 4.92 16 30 H 0.07 3.35 6.46 -2.39 -0.02 3.33 16 31 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 32 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 33 H 0.05 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -61.58 275.34 3.91 -57.67 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 1.07 Total: 17.26 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 3.47 Total: -26.16 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -1.53 Total: -82.55 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -11.79 SS G_CDS: -1.13 Total: -12.92 kcal Total: -61.58 3.91 -57.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715808756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.698 kcal (2) G-P(sol) polarization free energy of solvation -61.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds