Wall clock time and date at job start Mon Mar 30 2020 02:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34231 * 117.00645 * 2 1 4 4 O 1.20830 * 119.99510 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00747 * 180.02562 * 3 2 1 6 6 H 1.09004 * 112.84471 * 334.44440 * 5 3 2 7 7 C 1.53779 * 113.61753 * 203.24956 * 5 3 2 8 8 C 1.53787 * 87.07900 * 220.01823 * 7 5 3 9 9 C 1.53777 * 87.17570 * 25.38780 * 8 7 5 10 10 H 1.08996 * 113.61706 * 220.06221 * 9 8 7 11 11 C 1.50700 * 113.61686 * 89.15565 * 9 8 7 12 12 O 1.21291 * 119.99824 * 334.21564 * 11 9 8 13 13 N 1.34780 * 120.00122 * 154.20317 * 11 9 8 14 14 C 1.37090 * 119.99883 * 180.02562 * 13 11 9 15 15 H 1.08002 * 120.00435 * 0.02562 * 14 13 11 16 16 C 1.38951 * 119.99891 * 180.02562 * 14 13 11 17 17 N 1.31410 * 119.99823 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00080 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47188 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47300 * 119.99860 * 18 16 14 21 21 H 1.48499 * 109.46894 * 239.99686 * 18 16 14 22 22 H 1.09004 * 109.47402 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47065 * 299.99547 * 1 2 3 24 24 H 1.08994 * 109.47459 * 59.99711 * 1 2 3 25 25 H 1.08990 * 113.62010 * 105.46835 * 7 5 3 26 26 H 1.08998 * 113.61283 * 334.55933 * 7 5 3 27 27 H 1.08998 * 113.61259 * 139.98185 * 8 7 5 28 28 H 1.09002 * 113.61297 * 270.79447 * 8 7 5 29 29 H 0.97001 * 119.99550 * 0.02562 * 13 11 9 30 30 H 0.97000 * 120.00101 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0365 0.3919 0.4324 7 6 4.1140 2.5998 0.5556 8 6 5.1641 2.5458 -0.5666 9 6 4.1630 1.6881 -1.3583 10 1 4.6271 0.8647 -1.9012 11 6 3.2191 2.4953 -2.2118 12 8 2.9572 3.6405 -1.9099 13 7 2.6661 1.9448 -3.3108 14 6 1.8079 2.6793 -4.0875 15 1 1.5751 3.6992 -3.8190 16 6 1.2374 2.1117 -5.2202 17 7 1.5209 0.8709 -5.5471 18 14 0.0684 3.1127 -6.2789 19 1 -0.0839 4.4714 -5.6994 20 1 0.6155 3.2195 -7.6553 21 1 -1.2561 2.4426 -6.3233 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 4.5386 2.5113 1.5555 26 1 3.4179 3.4334 0.4624 27 1 5.3656 3.5149 -1.0230 28 1 6.0729 2.0117 -0.2889 29 1 2.8755 1.0289 -3.5521 30 1 1.1230 0.4747 -6.3380 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874260399.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:09 Heat of formation + Delta-G solvation = -103.457317 kcal Electronic energy + Delta-G solvation = -16296.475753 eV Core-core repulsion = 13478.754112 eV Total energy + Delta-G solvation = -2817.721642 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.58937 -38.76442 -36.55890 -35.64402 -33.79682 -31.18439 -28.27167 -26.68297 -25.90979 -24.29259 -21.34662 -20.37779 -18.39431 -17.67711 -17.43056 -16.38799 -15.97049 -15.51341 -14.74523 -14.33961 -13.83087 -13.59907 -13.49211 -12.66207 -12.53566 -12.16797 -11.69908 -11.56455 -11.48837 -11.11664 -10.89839 -10.53239 -10.34524 -10.33926 -10.23107 -10.07914 -9.76553 -9.47372 -8.30347 -7.93406 -6.39845 -3.79467 2.67708 3.14556 3.16710 3.27547 3.35823 3.79142 4.18117 4.71266 4.80599 4.91845 5.09570 5.32139 5.40423 5.42562 5.51344 5.55565 5.72239 5.88751 5.98449 6.02650 6.23865 6.34958 6.39020 6.79768 6.85188 7.57834 8.08291 8.28343 8.63373 9.20311 9.56268 10.08716 10.77876 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.027212 B = 0.009697 C = 0.008185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.704730 B = 2886.924553 C = 3420.043800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.364 6.364 3 C 0.460 3.540 4 O -0.476 6.476 5 C -0.097 4.097 6 H 0.118 0.882 7 C -0.115 4.115 8 C -0.117 4.117 9 C -0.108 4.108 10 H 0.092 0.908 11 C 0.451 3.549 12 O -0.572 6.572 13 N -0.559 5.559 14 C -0.294 4.294 15 H 0.103 0.897 16 C 0.022 3.978 17 N -0.901 5.901 18 Si 0.928 3.072 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.282 1.282 22 H 0.095 0.905 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.392 0.608 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.578 -4.310 9.330 10.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.282 6.282 3 C 0.301 3.699 4 O -0.361 6.361 5 C -0.117 4.117 6 H 0.136 0.864 7 C -0.152 4.152 8 C -0.155 4.155 9 C -0.130 4.130 10 H 0.110 0.890 11 C 0.236 3.764 12 O -0.456 6.456 13 N -0.194 5.194 14 C -0.424 4.424 15 H 0.121 0.879 16 C -0.180 4.180 17 N -0.542 5.542 18 Si 0.755 3.245 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.208 1.208 22 H 0.114 0.886 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.128 0.872 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.225 0.775 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.074 -3.325 9.356 10.394 hybrid contribution -0.753 -0.344 -0.834 1.175 sum 2.321 -3.670 8.522 9.564 Atomic orbital electron populations 1.23177 0.76947 1.03043 1.02530 1.86466 1.23070 1.34055 1.84568 1.23538 0.91754 0.81434 0.73171 1.90722 1.66447 1.35995 1.42890 1.22531 0.87727 1.01452 0.99975 0.86399 1.22958 0.98545 0.96118 0.97556 1.22652 0.95723 1.00909 0.96238 1.22395 0.97326 0.99621 0.93703 0.88980 1.19211 0.85454 0.88169 0.83595 1.90525 1.64569 1.18317 1.72145 1.41867 1.40554 1.14946 1.22055 1.19761 1.20295 0.98253 1.04083 0.87894 1.25256 0.98708 0.96156 0.97863 1.69626 1.44635 1.12867 1.27085 0.85818 0.79505 0.79842 0.79320 1.19202 1.20713 1.20781 0.88640 0.92511 0.91527 0.91311 0.87190 0.89848 0.89818 0.77515 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.56 101.05 1.07 1.63 16 2 O -0.36 -6.49 10.56 -39.26 -0.41 -6.91 16 3 C 0.46 9.04 6.57 36.00 0.24 9.28 16 4 O -0.48 -11.12 14.52 -22.45 -0.33 -11.45 16 5 C -0.10 -1.58 4.21 -90.87 -0.38 -1.96 16 6 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 7 C -0.11 -1.80 7.12 -25.92 -0.18 -1.99 16 8 C -0.12 -1.78 7.43 -25.92 -0.19 -1.97 16 9 C -0.11 -1.96 4.27 -90.87 -0.39 -2.35 16 10 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 11 C 0.45 11.02 5.50 -10.98 -0.06 10.96 16 12 O -0.57 -15.93 14.25 -1.92 -0.03 -15.96 16 13 N -0.56 -14.72 5.29 -10.96 -0.06 -14.78 16 14 C -0.29 -8.48 9.68 -14.94 -0.14 -8.62 16 15 H 0.10 3.14 7.16 -52.49 -0.38 2.77 16 16 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 17 N -0.90 -24.93 13.05 55.50 0.72 -24.21 16 18 Si 0.93 21.60 29.55 -169.99 -5.02 16.58 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 24 H 0.07 1.17 8.13 -51.93 -0.42 0.74 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.11 2.16 6.50 -51.93 -0.34 1.82 16 27 H 0.08 1.40 7.89 -51.93 -0.41 0.99 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.39 9.95 7.90 -40.82 -0.32 9.63 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 264.13 15.07 3.98 3.98 Total: -1.00 -33.60 264.13 -4.83 -38.43 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -3.54 Total: 8.84 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.15 Total: 5.47 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.67 Total: -38.99 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.77 Total: -34.31 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.60 -4.83 -38.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874260399.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.029 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds