Wall clock time and date at job start Mon Mar 30 2020 02:47:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45192 * 1
3 3 C 1.34231 * 117.00645 * 2 1
4 4 O 1.20830 * 119.99510 * 0.02562 * 3 2 1
5 5 C 1.50693 * 120.00747 * 180.02562 * 3 2 1
6 6 H 1.09004 * 112.84471 * 334.44440 * 5 3 2
7 7 C 1.53779 * 113.61753 * 203.24956 * 5 3 2
8 8 C 1.53787 * 87.07900 * 220.01823 * 7 5 3
9 9 C 1.53777 * 87.17570 * 25.38780 * 8 7 5
10 10 H 1.08996 * 113.61706 * 220.06221 * 9 8 7
11 11 C 1.50700 * 113.61686 * 89.15565 * 9 8 7
12 12 O 1.21291 * 119.99824 * 334.21564 * 11 9 8
13 13 N 1.34780 * 120.00122 * 154.20317 * 11 9 8
14 14 C 1.37090 * 119.99883 * 180.02562 * 13 11 9
15 15 H 1.08002 * 120.00435 * 0.02562 * 14 13 11
16 16 C 1.38951 * 119.99891 * 180.02562 * 14 13 11
17 17 N 1.31410 * 119.99823 * 359.97438 * 16 14 13
18 18 Si 1.86799 * 120.00080 * 180.02562 * 16 14 13
19 19 H 1.48497 * 109.47188 * 359.97438 * 18 16 14
20 20 H 1.48500 * 109.47300 * 119.99860 * 18 16 14
21 21 H 1.48499 * 109.46894 * 239.99686 * 18 16 14
22 22 H 1.09004 * 109.47402 * 180.02562 * 1 2 3
23 23 H 1.09002 * 109.47065 * 299.99547 * 1 2 3
24 24 H 1.08994 * 109.47459 * 59.99711 * 1 2 3
25 25 H 1.08990 * 113.62010 * 105.46835 * 7 5 3
26 26 H 1.08998 * 113.61283 * 334.55933 * 7 5 3
27 27 H 1.08998 * 113.61259 * 139.98185 * 8 7 5
28 28 H 1.09002 * 113.61297 * 270.79447 * 8 7 5
29 29 H 0.97001 * 119.99550 * 0.02562 * 13 11 9
30 30 H 0.97000 * 120.00101 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4519 0.0000 0.0000
3 6 2.0615 1.1959 0.0000
4 8 1.4034 2.2093 0.0005
5 6 3.5663 1.2748 -0.0006
6 1 4.0365 0.3919 0.4324
7 6 4.1140 2.5998 0.5556
8 6 5.1641 2.5458 -0.5666
9 6 4.1630 1.6881 -1.3583
10 1 4.6271 0.8647 -1.9012
11 6 3.2191 2.4953 -2.2118
12 8 2.9572 3.6405 -1.9099
13 7 2.6661 1.9448 -3.3108
14 6 1.8079 2.6793 -4.0875
15 1 1.5751 3.6992 -3.8190
16 6 1.2374 2.1117 -5.2202
17 7 1.5209 0.8709 -5.5471
18 14 0.0684 3.1127 -6.2789
19 1 -0.0839 4.4714 -5.6994
20 1 0.6155 3.2195 -7.6553
21 1 -1.2561 2.4426 -6.3233
22 1 -0.3634 -1.0277 0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8899
25 1 4.5386 2.5113 1.5555
26 1 3.4179 3.4334 0.4624
27 1 5.3656 3.5149 -1.0230
28 1 6.0729 2.0117 -0.2889
29 1 2.8755 1.0289 -3.5521
30 1 1.1230 0.4747 -6.3380
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000874260399.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:47:09
Heat of formation + Delta-G solvation = -127.492910 kcal
Electronic energy + Delta-G solvation = -16297.518015 eV
Core-core repulsion = 13478.754112 eV
Total energy + Delta-G solvation = -2818.763903 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.099 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-42.09687 -40.39360 -38.24483 -37.20367 -35.88021 -33.28696 -29.60047 -28.39749
-27.17424 -26.13429 -22.78575 -22.01859 -20.30090 -19.42786 -18.99683 -17.95190
-17.46043 -17.21299 -16.39770 -16.07834 -15.66776 -15.20828 -15.06843 -14.22231
-14.12260 -13.75293 -13.50490 -13.09518 -12.95606 -12.82796 -12.46712 -12.23008
-12.17808 -11.89486 -11.78814 -11.52755 -11.37286 -11.24301 -10.25386 -10.03116
-8.50612 -5.98712 1.15166 1.31264 1.35645 1.50236 1.80582 1.96463
2.25965 3.09671 3.12487 3.46279 3.63769 3.88151 3.96294 4.16556
4.25813 4.28949 4.49548 4.57022 4.65202 4.77373 4.85397 5.05036
5.14351 5.35961 5.41875 5.54420 5.96772 6.55550 6.80129 7.09513
7.52012 8.09866 8.67063
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.027212 B = 0.009697 C = 0.008185
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1028.704730 B = 2886.924553 C = 3420.043800
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.361 6.361
3 C 0.451 3.549
4 O -0.527 6.527
5 C -0.087 4.087
6 H 0.175 0.825
7 C -0.116 4.116
8 C -0.101 4.101
9 C -0.119 4.119
10 H 0.123 0.877
11 C 0.447 3.553
12 O -0.614 6.614
13 N -0.571 5.571
14 C -0.331 4.331
15 H 0.071 0.929
16 C -0.011 4.011
17 N -0.917 5.917
18 Si 0.989 3.011
19 H -0.278 1.278
20 H -0.265 1.265
21 H -0.270 1.270
22 H 0.137 0.863
23 H 0.066 0.934
24 H 0.034 0.966
25 H 0.113 0.887
26 H 0.059 0.941
27 H 0.058 0.942
28 H 0.140 0.860
29 H 0.394 0.606
30 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.813 -6.153 10.017 12.703
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.278 6.278
3 C 0.295 3.705
4 O -0.414 6.414
5 C -0.106 4.106
6 H 0.192 0.808
7 C -0.153 4.153
8 C -0.138 4.138
9 C -0.141 4.141
10 H 0.141 0.859
11 C 0.234 3.766
12 O -0.500 6.500
13 N -0.207 5.207
14 C -0.461 4.461
15 H 0.089 0.911
16 C -0.211 4.211
17 N -0.558 5.558
18 Si 0.813 3.187
19 H -0.203 1.203
20 H -0.190 1.190
21 H -0.195 1.195
22 H 0.156 0.844
23 H 0.085 0.915
24 H 0.053 0.947
25 H 0.132 0.868
26 H 0.078 0.922
27 H 0.077 0.923
28 H 0.158 0.842
29 H 0.228 0.772
30 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 4.328 -5.212 10.043 12.114
hybrid contribution -1.163 0.217 -1.000 1.549
sum 3.165 -4.996 9.043 10.805
Atomic orbital electron populations
1.23416 0.75843 1.05460 1.01461 1.86467 1.24254 1.33141 1.83936
1.24401 0.93342 0.81103 0.71685 1.90712 1.67853 1.37664 1.45211
1.22843 0.85386 1.03867 0.98551 0.80792 1.22892 0.97873 0.94193
1.00378 1.22760 0.96857 0.99764 0.94453 1.22441 0.97155 1.00456
0.94018 0.85898 1.20391 0.85014 0.88152 0.83043 1.90496 1.65939
1.20658 1.72934 1.41939 1.41006 1.14927 1.22866 1.19615 1.22781
0.97714 1.05992 0.91080 1.25997 0.99600 0.97246 0.98263 1.69671
1.44991 1.13566 1.27563 0.84935 0.77917 0.77867 0.78003 1.20279
1.18980 1.19469 0.84449 0.91521 0.94725 0.86834 0.92182 0.92308
0.84174 0.77177 0.91213
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.95 10.56 113.37 1.20 2.14 16
2 O -0.36 -12.39 10.56 -51.42 -0.54 -12.93 16
3 C 0.45 17.48 6.57 71.23 0.47 17.94 16
4 O -0.53 -25.47 14.52 25.49 0.37 -25.10 16
5 C -0.09 -2.58 4.21 -10.96 -0.05 -2.62 16
6 H 0.17 3.25 8.14 -2.39 -0.02 3.23 16
7 C -0.12 -3.39 7.12 31.12 0.22 -3.17 16
8 C -0.10 -2.74 7.43 31.12 0.23 -2.51 16
9 C -0.12 -4.07 4.27 -10.95 -0.05 -4.12 16
10 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16
11 C 0.45 22.33 5.50 87.66 0.48 22.82 16
12 O -0.61 -35.94 14.25 4.07 0.06 -35.88 16
13 N -0.57 -30.97 5.29 -306.98 -1.62 -32.59 16
14 C -0.33 -19.87 9.68 84.04 0.81 -19.06 16
15 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16
16 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16
17 N -0.92 -50.72 13.05 21.66 0.28 -50.44 16
18 Si 0.99 44.74 29.55 68.60 2.03 46.77 16
19 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16
20 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16
21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16
22 H 0.14 2.88 8.14 -2.38 -0.02 2.86 16
23 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16
24 H 0.03 1.24 8.13 -2.39 -0.02 1.22 16
25 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16
26 H 0.06 2.40 6.50 -2.39 -0.02 2.38 16
27 H 0.06 1.90 7.89 -2.39 -0.02 1.89 16
28 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16
29 H 0.39 20.36 7.90 -92.71 -0.73 19.63 16
30 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16
Total: -1.00 -78.21 264.13 4.79 -73.42
By element:
Atomic # 1 Polarization: 25.04 SS G_CDS: 0.43 Total: 25.47 kcal
Atomic # 6 Polarization: 7.48 SS G_CDS: 3.79 Total: 11.27 kcal
Atomic # 7 Polarization: -81.69 SS G_CDS: -1.34 Total: -83.03 kcal
Atomic # 8 Polarization: -73.79 SS G_CDS: -0.12 Total: -73.90 kcal
Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal
Total: -78.21 4.79 -73.42 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000874260399.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.071 kcal
(2) G-P(sol) polarization free energy of solvation -78.209 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.280 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.422 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.493 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds