Wall clock time and date at job start Mon Mar 30 2020 02:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34231 * 117.00645 * 2 1 4 4 O 1.20830 * 119.99510 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00747 * 180.02562 * 3 2 1 6 6 H 1.09004 * 112.84471 * 334.44440 * 5 3 2 7 7 C 1.53779 * 113.61753 * 203.24956 * 5 3 2 8 8 C 1.53787 * 87.07900 * 220.01823 * 7 5 3 9 9 C 1.53777 * 87.17570 * 25.38780 * 8 7 5 10 10 H 1.08996 * 113.61706 * 220.06221 * 9 8 7 11 11 C 1.50700 * 113.61686 * 89.15565 * 9 8 7 12 12 O 1.21291 * 119.99824 * 334.21564 * 11 9 8 13 13 N 1.34780 * 120.00122 * 154.20317 * 11 9 8 14 14 C 1.37090 * 119.99883 * 180.02562 * 13 11 9 15 15 H 1.08002 * 120.00435 * 0.02562 * 14 13 11 16 16 C 1.38951 * 119.99891 * 180.02562 * 14 13 11 17 17 N 1.31410 * 119.99823 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00080 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47188 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47300 * 119.99860 * 18 16 14 21 21 H 1.48499 * 109.46894 * 239.99686 * 18 16 14 22 22 H 1.09004 * 109.47402 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47065 * 299.99547 * 1 2 3 24 24 H 1.08994 * 109.47459 * 59.99711 * 1 2 3 25 25 H 1.08990 * 113.62010 * 105.46835 * 7 5 3 26 26 H 1.08998 * 113.61283 * 334.55933 * 7 5 3 27 27 H 1.08998 * 113.61259 * 139.98185 * 8 7 5 28 28 H 1.09002 * 113.61297 * 270.79447 * 8 7 5 29 29 H 0.97001 * 119.99550 * 0.02562 * 13 11 9 30 30 H 0.97000 * 120.00101 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0365 0.3919 0.4324 7 6 4.1140 2.5998 0.5556 8 6 5.1641 2.5458 -0.5666 9 6 4.1630 1.6881 -1.3583 10 1 4.6271 0.8647 -1.9012 11 6 3.2191 2.4953 -2.2118 12 8 2.9572 3.6405 -1.9099 13 7 2.6661 1.9448 -3.3108 14 6 1.8079 2.6793 -4.0875 15 1 1.5751 3.6992 -3.8190 16 6 1.2374 2.1117 -5.2202 17 7 1.5209 0.8709 -5.5471 18 14 0.0684 3.1127 -6.2789 19 1 -0.0839 4.4714 -5.6994 20 1 0.6155 3.2195 -7.6553 21 1 -1.2561 2.4426 -6.3233 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 4.5386 2.5113 1.5555 26 1 3.4179 3.4334 0.4624 27 1 5.3656 3.5149 -1.0230 28 1 6.0729 2.0117 -0.2889 29 1 2.8755 1.0289 -3.5521 30 1 1.1230 0.4747 -6.3380 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874260399.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:09 Heat of formation + Delta-G solvation = -127.492910 kcal Electronic energy + Delta-G solvation = -16297.518015 eV Core-core repulsion = 13478.754112 eV Total energy + Delta-G solvation = -2818.763903 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.09687 -40.39360 -38.24483 -37.20367 -35.88021 -33.28696 -29.60047 -28.39749 -27.17424 -26.13429 -22.78575 -22.01859 -20.30090 -19.42786 -18.99683 -17.95190 -17.46043 -17.21299 -16.39770 -16.07834 -15.66776 -15.20828 -15.06843 -14.22231 -14.12260 -13.75293 -13.50490 -13.09518 -12.95606 -12.82796 -12.46712 -12.23008 -12.17808 -11.89486 -11.78814 -11.52755 -11.37286 -11.24301 -10.25386 -10.03116 -8.50612 -5.98712 1.15166 1.31264 1.35645 1.50236 1.80582 1.96463 2.25965 3.09671 3.12487 3.46279 3.63769 3.88151 3.96294 4.16556 4.25813 4.28949 4.49548 4.57022 4.65202 4.77373 4.85397 5.05036 5.14351 5.35961 5.41875 5.54420 5.96772 6.55550 6.80129 7.09513 7.52012 8.09866 8.67063 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.027212 B = 0.009697 C = 0.008185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.704730 B = 2886.924553 C = 3420.043800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.451 3.549 4 O -0.527 6.527 5 C -0.087 4.087 6 H 0.175 0.825 7 C -0.116 4.116 8 C -0.101 4.101 9 C -0.119 4.119 10 H 0.123 0.877 11 C 0.447 3.553 12 O -0.614 6.614 13 N -0.571 5.571 14 C -0.331 4.331 15 H 0.071 0.929 16 C -0.011 4.011 17 N -0.917 5.917 18 Si 0.989 3.011 19 H -0.278 1.278 20 H -0.265 1.265 21 H -0.270 1.270 22 H 0.137 0.863 23 H 0.066 0.934 24 H 0.034 0.966 25 H 0.113 0.887 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.140 0.860 29 H 0.394 0.606 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.813 -6.153 10.017 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.278 6.278 3 C 0.295 3.705 4 O -0.414 6.414 5 C -0.106 4.106 6 H 0.192 0.808 7 C -0.153 4.153 8 C -0.138 4.138 9 C -0.141 4.141 10 H 0.141 0.859 11 C 0.234 3.766 12 O -0.500 6.500 13 N -0.207 5.207 14 C -0.461 4.461 15 H 0.089 0.911 16 C -0.211 4.211 17 N -0.558 5.558 18 Si 0.813 3.187 19 H -0.203 1.203 20 H -0.190 1.190 21 H -0.195 1.195 22 H 0.156 0.844 23 H 0.085 0.915 24 H 0.053 0.947 25 H 0.132 0.868 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.158 0.842 29 H 0.228 0.772 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.328 -5.212 10.043 12.114 hybrid contribution -1.163 0.217 -1.000 1.549 sum 3.165 -4.996 9.043 10.805 Atomic orbital electron populations 1.23416 0.75843 1.05460 1.01461 1.86467 1.24254 1.33141 1.83936 1.24401 0.93342 0.81103 0.71685 1.90712 1.67853 1.37664 1.45211 1.22843 0.85386 1.03867 0.98551 0.80792 1.22892 0.97873 0.94193 1.00378 1.22760 0.96857 0.99764 0.94453 1.22441 0.97155 1.00456 0.94018 0.85898 1.20391 0.85014 0.88152 0.83043 1.90496 1.65939 1.20658 1.72934 1.41939 1.41006 1.14927 1.22866 1.19615 1.22781 0.97714 1.05992 0.91080 1.25997 0.99600 0.97246 0.98263 1.69671 1.44991 1.13566 1.27563 0.84935 0.77917 0.77867 0.78003 1.20279 1.18980 1.19469 0.84449 0.91521 0.94725 0.86834 0.92182 0.92308 0.84174 0.77177 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 10.56 113.37 1.20 2.14 16 2 O -0.36 -12.39 10.56 -51.42 -0.54 -12.93 16 3 C 0.45 17.48 6.57 71.23 0.47 17.94 16 4 O -0.53 -25.47 14.52 25.49 0.37 -25.10 16 5 C -0.09 -2.58 4.21 -10.96 -0.05 -2.62 16 6 H 0.17 3.25 8.14 -2.39 -0.02 3.23 16 7 C -0.12 -3.39 7.12 31.12 0.22 -3.17 16 8 C -0.10 -2.74 7.43 31.12 0.23 -2.51 16 9 C -0.12 -4.07 4.27 -10.95 -0.05 -4.12 16 10 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 11 C 0.45 22.33 5.50 87.66 0.48 22.82 16 12 O -0.61 -35.94 14.25 4.07 0.06 -35.88 16 13 N -0.57 -30.97 5.29 -306.98 -1.62 -32.59 16 14 C -0.33 -19.87 9.68 84.04 0.81 -19.06 16 15 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 16 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 17 N -0.92 -50.72 13.05 21.66 0.28 -50.44 16 18 Si 0.99 44.74 29.55 68.60 2.03 46.77 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H 0.14 2.88 8.14 -2.38 -0.02 2.86 16 23 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 24 H 0.03 1.24 8.13 -2.39 -0.02 1.22 16 25 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.06 2.40 6.50 -2.39 -0.02 2.38 16 27 H 0.06 1.90 7.89 -2.39 -0.02 1.89 16 28 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.39 20.36 7.90 -92.71 -0.73 19.63 16 30 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -78.21 264.13 4.79 -73.42 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.43 Total: 25.47 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 3.79 Total: 11.27 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -1.34 Total: -83.03 kcal Atomic # 8 Polarization: -73.79 SS G_CDS: -0.12 Total: -73.90 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -78.21 4.79 -73.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874260399.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.071 kcal (2) G-P(sol) polarization free energy of solvation -78.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds