Wall clock time and date at job start Mon Mar 30 2020 03:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52250 * 109.94138 * 2 1 4 4 S 1.84838 * 100.18136 * 69.74581 * 3 2 1 5 5 C 1.84602 * 96.98323 * 24.31319 * 4 3 2 6 6 C 1.51130 * 102.68672 * 6.98819 * 5 4 3 7 7 H 1.09003 * 108.82936 * 80.96342 * 6 5 4 8 8 C 1.51313 * 121.50750 * 210.21217 * 6 5 4 9 9 N 1.49762 * 101.89796 * 161.31648 * 8 6 5 10 10 C 1.46905 * 110.99913 * 212.88463 * 9 8 6 11 11 C 1.50695 * 109.46969 * 310.28054 * 10 9 8 12 12 H 1.07994 * 120.00275 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99486 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99646 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 120.00330 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47022 * 89.99656 * 15 13 11 17 17 H 1.48496 * 109.47394 * 209.99558 * 15 13 11 18 18 H 1.48507 * 109.47223 * 330.00098 * 15 13 11 19 19 C 1.49282 * 108.12300 * 334.85988 * 9 8 6 20 20 H 1.09005 * 109.47056 * 61.01398 * 1 2 3 21 21 H 1.09002 * 109.47334 * 181.01061 * 1 2 3 22 22 H 1.08991 * 109.47042 * 301.01513 * 1 2 3 23 23 H 1.09002 * 111.27627 * 187.49331 * 3 2 1 24 24 H 1.09002 * 111.27762 * 311.99469 * 3 2 1 25 25 H 1.08998 * 110.76536 * 248.68807 * 5 4 3 26 26 H 1.09000 * 110.92323 * 125.36173 * 5 4 3 27 27 H 1.08994 * 111.77175 * 42.98648 * 8 6 5 28 28 H 1.09004 * 110.64038 * 279.13795 * 8 6 5 29 29 H 1.08996 * 109.46926 * 70.28310 * 10 9 8 30 30 H 1.08996 * 109.46925 * 190.27743 * 10 9 8 31 31 H 0.97006 * 120.00221 * 179.97438 * 14 13 11 32 32 H 1.09000 * 110.29236 * 235.59210 * 19 9 8 33 33 H 1.08998 * 110.29150 * 113.46479 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0493 1.4312 0.0000 4 16 1.5687 1.9532 1.7068 5 6 1.5191 0.2650 2.4521 6 6 2.0619 -0.6043 1.3414 7 1 3.1503 -0.5449 1.3482 8 6 1.6234 -2.0431 1.1772 9 7 2.0149 -2.3254 -0.2405 10 6 1.0785 -3.2677 -0.8677 11 6 0.8879 -4.4608 0.0330 12 1 1.4104 -4.5139 0.9766 13 6 0.0464 -5.4845 -0.3478 14 7 -0.1196 -6.5259 0.4380 15 14 -0.8568 -5.3928 -1.9803 16 1 -0.0251 -6.0149 -3.0417 17 1 -2.1475 -6.1192 -1.8734 18 1 -1.1156 -3.9714 -2.3237 19 6 2.0456 -1.0293 -0.9806 20 1 -0.3633 0.4980 -0.8990 21 1 -0.3634 -1.0275 0.0181 22 1 -0.3633 0.5295 0.8807 23 1 3.1309 1.4596 -0.1325 24 1 1.5454 2.0348 -0.7549 25 1 0.4961 -0.0182 2.6997 26 1 2.1579 0.2097 3.3335 27 1 0.5475 -2.1556 1.3109 28 1 2.1668 -2.6913 1.8648 29 1 0.1192 -2.7752 -1.0263 30 1 1.4810 -3.5963 -1.8258 31 1 -0.7119 -7.2460 0.1703 32 1 1.3961 -1.0776 -1.8546 33 1 3.0658 -0.7888 -1.2796 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885832101.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:53 Heat of formation + Delta-G solvation = 15.358787 kcal Electronic energy + Delta-G solvation = -14517.432062 eV Core-core repulsion = 12283.448639 eV Total energy + Delta-G solvation = -2233.983423 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.16684 -34.48669 -32.26794 -31.22410 -28.40272 -27.38049 -26.31192 -24.46845 -21.28651 -19.98173 -18.72264 -16.84529 -16.24316 -15.50616 -15.19765 -14.75841 -14.37558 -13.97845 -12.92671 -12.87255 -12.52204 -12.29935 -12.08499 -11.98658 -11.81394 -11.54758 -11.24545 -11.02784 -10.76554 -10.60699 -10.41184 -10.16673 -9.84711 -9.64600 -9.24200 -8.64760 -7.67868 -7.48096 -6.11736 -4.10289 1.83045 2.28302 3.24283 3.31986 3.33167 4.36258 4.40248 4.50257 4.67386 5.06257 5.13480 5.20256 5.28516 5.33092 5.48000 5.61422 5.64434 5.77957 5.85379 5.88208 6.10585 6.20088 6.24278 6.37968 6.48458 6.58647 6.76981 6.96376 7.38713 7.78795 7.85716 8.54629 8.94486 9.49552 11.00981 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.048601 B = 0.007576 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.983106 B = 3695.163916 C = 3884.446588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 C -0.037 4.037 4 S -0.320 6.320 5 C -0.043 4.043 6 C -0.117 4.117 7 H 0.085 0.915 8 C 0.081 3.919 9 N -0.515 5.515 10 C 0.154 3.846 11 C -0.518 4.518 12 H 0.081 0.919 13 C 0.071 3.929 14 N -0.898 5.898 15 Si 0.874 3.126 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.268 1.268 19 C 0.061 3.939 20 H 0.055 0.945 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.079 0.921 29 H -0.008 1.008 30 H 0.026 0.974 31 H 0.264 0.736 32 H 0.058 0.942 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.408 14.212 -0.390 14.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 C -0.185 4.185 4 S -0.092 6.092 5 C -0.192 4.192 6 C -0.137 4.137 7 H 0.103 0.897 8 C -0.048 4.048 9 N -0.239 5.239 10 C 0.027 3.973 11 C -0.557 4.557 12 H 0.100 0.900 13 C -0.131 4.131 14 N -0.537 5.537 15 Si 0.702 3.298 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.192 1.192 19 C -0.069 4.069 20 H 0.074 0.926 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.110 0.890 24 H 0.117 0.883 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.009 0.991 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.591 14.912 0.101 15.135 hybrid contribution -1.113 -0.830 -1.366 1.947 sum 1.478 14.082 -1.265 14.216 Atomic orbital electron populations 1.22130 0.93073 1.03206 1.02462 1.22176 0.97485 0.93141 0.97892 1.23624 1.03531 0.97418 0.93924 1.87781 1.92270 1.16521 1.12628 1.23316 1.05084 0.91107 0.99643 1.22401 1.01636 0.97369 0.92327 0.89693 1.22233 1.00120 0.90974 0.91491 1.64839 1.50524 1.07641 1.00941 1.20394 0.89060 0.91981 0.95870 1.21083 1.26776 1.01686 1.06114 0.90049 1.24903 0.96312 0.95124 0.96805 1.69890 1.37923 1.08689 1.37148 0.86867 0.79621 0.78549 0.84801 1.20065 1.21179 1.19248 1.22353 1.00339 0.88802 0.95386 0.92586 0.91245 0.91241 0.89017 0.88254 0.88794 0.88517 0.91933 0.90218 0.99074 0.95556 0.92587 0.92336 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 7.77 37.16 0.29 -1.92 16 2 C -0.10 -1.46 0.97 -153.93 -0.15 -1.61 16 3 C -0.04 -0.44 6.66 36.77 0.25 -0.20 16 4 S -0.32 -4.24 22.09 -107.50 -2.37 -6.61 16 5 C -0.04 -0.56 6.42 36.22 0.23 -0.33 16 6 C -0.12 -1.70 2.27 -90.56 -0.21 -1.91 16 7 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 8 C 0.08 1.48 4.62 -3.07 -0.01 1.46 16 9 N -0.52 -10.32 5.37 -233.61 -1.25 -11.57 16 10 C 0.15 3.61 3.56 -4.98 -0.02 3.59 16 11 C -0.52 -14.28 8.94 -34.44 -0.31 -14.58 16 12 H 0.08 2.42 6.97 -52.49 -0.37 2.05 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 15 Si 0.87 21.12 27.47 -169.99 -4.67 16.45 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 19 C 0.06 0.98 6.02 -3.39 -0.02 0.96 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 21 H 0.07 1.18 5.26 -51.93 -0.27 0.91 16 22 H 0.07 0.97 5.72 -51.93 -0.30 0.68 16 23 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.10 1.08 8.13 -51.93 -0.42 0.66 16 25 H 0.09 1.21 7.50 -51.93 -0.39 0.82 16 26 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.06 1.24 6.34 -51.93 -0.33 0.91 16 28 H 0.08 1.53 7.74 -51.93 -0.40 1.13 16 29 H -0.01 -0.20 5.98 -51.93 -0.31 -0.51 16 30 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.06 0.95 7.41 -51.93 -0.38 0.56 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 259.98 15.07 3.92 3.92 Total: -1.00 -28.99 259.98 -8.50 -37.49 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -4.85 Total: -0.82 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -0.05 Total: -12.63 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.48 Total: -37.79 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: -4.24 SS G_CDS: -2.37 Total: -6.61 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.99 -8.50 -37.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885832101.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.846 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds