Wall clock time and date at job start Mon Mar 30 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52249 * 109.94141 * 2 1 4 4 S 1.84836 * 100.13898 * 290.22876 * 3 2 1 5 5 C 1.85582 * 97.05338 * 336.18625 * 4 3 2 6 6 C 1.51123 * 102.16258 * 352.23637 * 5 4 3 7 7 H 1.08998 * 109.22929 * 279.67625 * 6 5 4 8 8 C 1.51608 * 122.41708 * 151.00715 * 6 5 4 9 9 N 1.49759 * 102.63098 * 199.67776 * 8 6 5 10 10 C 1.46896 * 111.00270 * 146.36343 * 9 8 6 11 11 C 1.50702 * 109.47331 * 69.71439 * 10 9 8 12 12 H 1.08003 * 119.99849 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00395 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00284 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99792 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.46757 * 89.99922 * 15 13 11 17 17 H 1.48498 * 109.47107 * 209.99876 * 15 13 11 18 18 H 1.48500 * 109.47096 * 330.00064 * 15 13 11 19 19 C 1.49276 * 108.12240 * 24.38636 * 9 8 6 20 20 H 1.08996 * 109.46875 * 174.25009 * 1 2 3 21 21 H 1.08993 * 109.46777 * 294.25068 * 1 2 3 22 22 H 1.08996 * 109.46722 * 54.25142 * 1 2 3 23 23 H 1.08994 * 111.27581 * 47.95459 * 3 2 1 24 24 H 1.09004 * 111.27667 * 172.46089 * 3 2 1 25 25 H 1.09005 * 110.27942 * 234.43784 * 5 4 3 26 26 H 1.08993 * 111.74258 * 110.69191 * 5 4 3 27 27 H 1.08999 * 110.77617 * 317.96022 * 8 6 5 28 28 H 1.09004 * 110.78022 * 81.39066 * 8 6 5 29 29 H 1.09000 * 109.47230 * 189.71821 * 10 9 8 30 30 H 1.09007 * 109.47233 * 309.71848 * 10 9 8 31 31 H 0.97004 * 120.00200 * 180.02562 * 14 13 11 32 32 H 1.08998 * 110.29662 * 246.53551 * 19 9 8 33 33 H 1.09005 * 110.29388 * 124.40960 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0493 1.4312 0.0000 4 16 1.5689 1.9516 -1.7073 5 6 1.5035 0.2536 -2.4532 6 6 2.0619 -0.6043 -1.3415 7 1 3.1500 -0.5401 -1.3505 8 6 1.6608 -2.0543 -1.1541 9 7 2.0385 -2.3170 0.2711 10 6 1.1055 -3.2632 0.8972 11 6 1.3017 -4.6324 0.2988 12 1 2.0454 -4.7845 -0.4695 13 6 0.5325 -5.6911 0.7328 14 7 0.7040 -6.8860 0.2110 15 14 -0.7534 -5.4283 2.0621 16 1 -2.0491 -5.0671 1.4328 17 1 -0.9159 -6.6780 2.8476 18 1 -0.3174 -4.3308 2.9624 19 6 2.0456 -1.0129 0.9975 20 1 -0.3633 -1.0225 -0.1030 21 1 -0.3632 0.4221 0.9369 22 1 -0.3632 0.6004 -0.8340 23 1 1.5448 2.0350 0.7542 24 1 3.1308 1.4596 0.1333 25 1 2.1402 0.2042 -3.3366 26 1 0.4826 -0.0425 -2.6942 27 1 0.5880 -2.1805 -1.2993 28 1 2.2222 -2.7011 -1.8284 29 1 1.2953 -3.3048 1.9697 30 1 0.0814 -2.9335 0.7219 31 1 0.1626 -7.6308 0.5160 32 1 3.0593 -0.7575 1.3061 33 1 1.3862 -1.0593 1.8643 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885832102.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:56 Heat of formation + Delta-G solvation = 15.166698 kcal Electronic energy + Delta-G solvation = -14452.252077 eV Core-core repulsion = 12218.260324 eV Total energy + Delta-G solvation = -2233.991753 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.15845 -34.46837 -32.27898 -31.26486 -28.42150 -27.43497 -26.32249 -24.49269 -21.24153 -20.08490 -18.72491 -16.91142 -16.24023 -15.58434 -15.20538 -14.77601 -14.42718 -13.91062 -13.08456 -12.90292 -12.46686 -12.28577 -12.12479 -12.03491 -11.86781 -11.56381 -11.35022 -11.06743 -10.78078 -10.64762 -10.45673 -10.11188 -9.85416 -9.65646 -9.31847 -8.62290 -7.71933 -7.49914 -6.09025 -4.06724 1.77632 2.23497 3.24028 3.32481 3.33440 4.36445 4.37712 4.44888 4.62288 5.01799 5.08056 5.21410 5.23760 5.28495 5.43732 5.57668 5.59111 5.72570 5.78884 5.82756 6.06274 6.15054 6.19384 6.28335 6.40355 6.53833 6.70133 6.84082 7.47364 7.78012 7.81654 8.59557 9.00219 9.52493 11.04195 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.050621 B = 0.007314 C = 0.006988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.002325 B = 3827.202665 C = 4005.631020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 C -0.037 4.037 4 S -0.324 6.324 5 C -0.037 4.037 6 C -0.119 4.119 7 H 0.086 0.914 8 C 0.077 3.923 9 N -0.511 5.511 10 C 0.156 3.844 11 C -0.510 4.510 12 H 0.080 0.920 13 C 0.069 3.931 14 N -0.899 5.899 15 Si 0.873 3.127 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.267 1.267 19 C 0.060 3.940 20 H 0.066 0.934 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.099 0.901 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.029 0.971 30 H -0.014 1.014 31 H 0.264 0.736 32 H 0.073 0.927 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 15.179 -1.204 15.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 C -0.185 4.185 4 S -0.096 6.096 5 C -0.185 4.185 6 C -0.139 4.139 7 H 0.104 0.896 8 C -0.052 4.052 9 N -0.235 5.235 10 C 0.029 3.971 11 C -0.548 4.548 12 H 0.098 0.902 13 C -0.133 4.133 14 N -0.538 5.538 15 Si 0.701 3.299 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.192 1.192 19 C -0.070 4.070 20 H 0.085 0.915 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.118 0.882 24 H 0.111 0.889 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.047 0.953 30 H 0.004 0.996 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.677 15.876 -1.656 15.976 hybrid contribution -1.341 -0.728 1.206 1.945 sum -0.664 15.148 -0.450 15.169 Atomic orbital electron populations 1.22144 0.93189 1.03087 1.02561 1.22196 0.97398 0.93270 0.97792 1.23640 1.03632 0.97426 0.93799 1.87924 1.92216 1.16506 1.12965 1.23384 1.04896 0.90779 0.99428 1.22402 1.01841 0.97183 0.92452 0.89600 1.22333 0.99691 0.91491 0.91711 1.64818 1.51008 1.07087 1.00550 1.20416 0.88847 0.92584 0.95213 1.21006 1.20782 0.90457 1.22536 0.90176 1.24898 0.96979 0.95092 0.96310 1.69887 1.40698 1.00208 1.43017 0.86889 0.82373 0.77935 0.82725 1.20334 1.21063 1.19219 1.22381 1.00476 0.88771 0.95352 0.91535 0.92457 0.91124 0.88226 0.88915 0.88477 0.88733 0.92858 0.89923 0.95338 0.99602 0.92626 0.90897 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 7.80 37.16 0.29 -1.83 16 2 C -0.10 -1.42 0.93 -153.93 -0.14 -1.56 16 3 C -0.04 -0.43 6.64 36.77 0.24 -0.19 16 4 S -0.32 -4.18 22.05 -107.50 -2.37 -6.55 16 5 C -0.04 -0.45 6.50 36.21 0.24 -0.22 16 6 C -0.12 -1.67 2.27 -90.42 -0.21 -1.88 16 7 H 0.09 1.23 8.13 -51.93 -0.42 0.81 16 8 C 0.08 1.36 5.49 -2.93 -0.02 1.35 16 9 N -0.51 -10.21 5.24 -233.44 -1.22 -11.43 16 10 C 0.16 3.67 3.46 -4.98 -0.02 3.65 16 11 C -0.51 -14.23 9.38 -34.44 -0.32 -14.55 16 12 H 0.08 2.44 8.03 -52.48 -0.42 2.02 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 15 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 19 C 0.06 0.96 6.06 -3.40 -0.02 0.94 16 20 H 0.07 1.06 5.40 -51.93 -0.28 0.78 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.07 0.94 5.81 -51.93 -0.30 0.63 16 23 H 0.10 1.06 8.13 -51.93 -0.42 0.64 16 24 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.09 1.14 7.61 -51.93 -0.40 0.75 16 27 H 0.05 0.99 6.33 -51.93 -0.33 0.66 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 29 H 0.03 0.69 7.05 -51.93 -0.37 0.32 16 30 H -0.01 -0.32 6.28 -51.93 -0.33 -0.64 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.95 7.36 -51.93 -0.38 0.57 16 LS Contribution 262.62 15.07 3.96 3.96 Total: -1.00 -29.42 262.62 -8.51 -37.93 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.93 Total: -1.51 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.05 Total: -12.42 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.45 Total: -37.93 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 16 Polarization: -4.18 SS G_CDS: -2.37 Total: -6.55 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.42 -8.51 -37.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885832102.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.099 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds