Wall clock time and date at job start Mon Mar 30 2020 03:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52249 * 109.94141 * 2 1 4 4 S 1.84836 * 100.13898 * 290.22876 * 3 2 1 5 5 C 1.85582 * 97.05338 * 336.18625 * 4 3 2 6 6 C 1.51123 * 102.16258 * 352.23637 * 5 4 3 7 7 H 1.08998 * 109.22929 * 279.67625 * 6 5 4 8 8 C 1.51608 * 122.41708 * 151.00715 * 6 5 4 9 9 N 1.49759 * 102.63098 * 199.67776 * 8 6 5 10 10 C 1.46896 * 111.00270 * 146.36343 * 9 8 6 11 11 C 1.50702 * 109.47331 * 69.71439 * 10 9 8 12 12 H 1.08003 * 119.99849 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00395 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00284 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99792 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.46757 * 89.99922 * 15 13 11 17 17 H 1.48498 * 109.47107 * 209.99876 * 15 13 11 18 18 H 1.48500 * 109.47096 * 330.00064 * 15 13 11 19 19 C 1.49276 * 108.12240 * 24.38636 * 9 8 6 20 20 H 1.08996 * 109.46875 * 174.25009 * 1 2 3 21 21 H 1.08993 * 109.46777 * 294.25068 * 1 2 3 22 22 H 1.08996 * 109.46722 * 54.25142 * 1 2 3 23 23 H 1.08994 * 111.27581 * 47.95459 * 3 2 1 24 24 H 1.09004 * 111.27667 * 172.46089 * 3 2 1 25 25 H 1.09005 * 110.27942 * 234.43784 * 5 4 3 26 26 H 1.08993 * 111.74258 * 110.69191 * 5 4 3 27 27 H 1.08999 * 110.77617 * 317.96022 * 8 6 5 28 28 H 1.09004 * 110.78022 * 81.39066 * 8 6 5 29 29 H 1.09000 * 109.47230 * 189.71821 * 10 9 8 30 30 H 1.09007 * 109.47233 * 309.71848 * 10 9 8 31 31 H 0.97004 * 120.00200 * 180.02562 * 14 13 11 32 32 H 1.08998 * 110.29662 * 246.53551 * 19 9 8 33 33 H 1.09005 * 110.29388 * 124.40960 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0493 1.4312 0.0000 4 16 1.5689 1.9516 -1.7073 5 6 1.5035 0.2536 -2.4532 6 6 2.0619 -0.6043 -1.3415 7 1 3.1500 -0.5401 -1.3505 8 6 1.6608 -2.0543 -1.1541 9 7 2.0385 -2.3170 0.2711 10 6 1.1055 -3.2632 0.8972 11 6 1.3017 -4.6324 0.2988 12 1 2.0454 -4.7845 -0.4695 13 6 0.5325 -5.6911 0.7328 14 7 0.7040 -6.8860 0.2110 15 14 -0.7534 -5.4283 2.0621 16 1 -2.0491 -5.0671 1.4328 17 1 -0.9159 -6.6780 2.8476 18 1 -0.3174 -4.3308 2.9624 19 6 2.0456 -1.0129 0.9975 20 1 -0.3633 -1.0225 -0.1030 21 1 -0.3632 0.4221 0.9369 22 1 -0.3632 0.6004 -0.8340 23 1 1.5448 2.0350 0.7542 24 1 3.1308 1.4596 0.1333 25 1 2.1402 0.2042 -3.3366 26 1 0.4826 -0.0425 -2.6942 27 1 0.5880 -2.1805 -1.2993 28 1 2.2222 -2.7011 -1.8284 29 1 1.2953 -3.3048 1.9697 30 1 0.0814 -2.9335 0.7219 31 1 0.1626 -7.6308 0.5160 32 1 3.0593 -0.7575 1.3061 33 1 1.3862 -1.0593 1.8643 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885832102.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:55 Heat of formation + Delta-G solvation = -4.273960 kcal Electronic energy + Delta-G solvation = -14453.095087 eV Core-core repulsion = 12218.260324 eV Total energy + Delta-G solvation = -2234.834763 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.42596 -36.08583 -34.28882 -32.40602 -30.22162 -28.49569 -27.56518 -26.12474 -22.88868 -21.53025 -19.92902 -18.93433 -17.31824 -16.91651 -16.61335 -16.30783 -15.60817 -15.55722 -14.69920 -14.45578 -14.15319 -13.49694 -13.35960 -13.23686 -13.12332 -12.96854 -12.71593 -12.61714 -12.27334 -12.16001 -11.81465 -11.60339 -11.49561 -11.36150 -10.83432 -10.76231 -9.07365 -8.69797 -8.29486 -6.33037 0.79044 1.23987 1.32836 1.34939 1.45338 2.32759 3.01767 3.08781 3.24714 3.51655 3.92021 3.96598 4.09054 4.16762 4.33722 4.44899 4.55526 4.62395 4.65375 4.69943 4.74474 4.86367 4.87494 5.00849 5.05045 5.08948 5.14892 5.33695 5.52719 5.93911 6.13690 6.57266 6.73603 7.30833 8.87335 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.050621 B = 0.007314 C = 0.006988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.002325 B = 3827.202665 C = 4005.631020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.027 4.027 4 S -0.332 6.332 5 C -0.033 4.033 6 C -0.108 4.108 7 H 0.087 0.913 8 C 0.078 3.922 9 N -0.533 5.533 10 C 0.169 3.831 11 C -0.517 4.517 12 H 0.036 0.964 13 C 0.008 3.992 14 N -0.948 5.948 15 Si 0.945 3.055 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.248 1.248 19 C 0.060 3.940 20 H 0.040 0.960 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.118 0.882 24 H 0.105 0.895 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.028 0.972 30 H -0.009 1.009 31 H 0.267 0.733 32 H 0.088 0.912 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 17.631 -0.034 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 C -0.175 4.175 4 S -0.105 6.105 5 C -0.181 4.181 6 C -0.129 4.129 7 H 0.105 0.895 8 C -0.051 4.051 9 N -0.257 5.257 10 C 0.042 3.958 11 C -0.555 4.555 12 H 0.054 0.946 13 C -0.189 4.189 14 N -0.589 5.589 15 Si 0.768 3.232 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.171 1.171 19 C -0.069 4.069 20 H 0.059 0.941 21 H 0.089 0.911 22 H 0.096 0.904 23 H 0.137 0.863 24 H 0.124 0.876 25 H 0.129 0.871 26 H 0.115 0.885 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.008 0.992 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.075 18.359 -0.491 18.366 hybrid contribution -1.063 -1.508 0.763 1.996 sum -0.988 16.852 0.272 16.883 Atomic orbital electron populations 1.22109 0.93209 1.01678 1.03638 1.22093 0.97290 0.94104 0.96296 1.23661 1.04635 0.95732 0.93485 1.88029 1.92347 1.16285 1.13789 1.23367 1.05264 0.90208 0.99236 1.22244 1.01891 0.94809 0.93906 0.89506 1.22198 0.98624 0.93858 0.90398 1.64658 1.50185 1.09134 1.01765 1.20120 0.89771 0.91115 0.94810 1.21261 1.19524 0.93141 1.21597 0.94609 1.25845 0.99505 0.94569 0.98996 1.70047 1.42349 1.01398 1.45067 0.85748 0.79310 0.78475 0.79637 1.19276 1.20692 1.17148 1.22419 1.01688 0.87269 0.95480 0.94052 0.91065 0.90438 0.86348 0.87608 0.87095 0.88539 0.94017 0.91996 0.95375 0.99185 0.92431 0.89361 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 7.80 71.98 0.56 -3.22 16 2 C -0.10 -2.36 0.93 -51.81 -0.05 -2.41 16 3 C -0.03 -0.54 6.64 71.73 0.48 -0.06 16 4 S -0.33 -7.57 22.05 -56.49 -1.25 -8.82 16 5 C -0.03 -0.74 6.50 71.37 0.46 -0.28 16 6 C -0.11 -2.89 2.27 -10.66 -0.02 -2.92 16 7 H 0.09 2.33 8.13 -2.39 -0.02 2.31 16 8 C 0.08 2.81 5.49 85.29 0.47 3.28 16 9 N -0.53 -21.19 5.24 -892.46 -4.68 -25.87 16 10 C 0.17 7.93 3.46 85.56 0.30 8.22 16 11 C -0.52 -29.73 9.38 25.60 0.24 -29.49 16 12 H 0.04 2.31 8.03 -2.91 -0.02 2.28 16 13 C 0.01 0.47 5.47 84.65 0.46 0.94 16 14 N -0.95 -59.18 13.96 21.44 0.30 -58.88 16 15 Si 0.94 43.54 27.47 68.60 1.88 45.42 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 18 H -0.25 -10.56 6.54 99.48 0.65 -9.90 16 19 C 0.06 1.80 6.06 85.26 0.52 2.32 16 20 H 0.04 1.26 5.40 -2.39 -0.01 1.25 16 21 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.08 1.86 5.81 -2.39 -0.01 1.84 16 23 H 0.12 1.98 8.13 -2.39 -0.02 1.96 16 24 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 26 H 0.10 2.17 7.61 -2.39 -0.02 2.15 16 27 H 0.04 1.58 6.33 -2.39 -0.02 1.57 16 28 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.03 1.32 7.05 -2.39 -0.02 1.30 16 30 H -0.01 -0.43 6.28 -2.38 -0.01 -0.45 16 31 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 32 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.06 1.83 7.36 -2.38 -0.02 1.81 16 Total: -1.00 -64.37 262.62 0.70 -63.67 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 1.03 Total: 8.10 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 3.41 Total: -23.63 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -4.38 Total: -84.75 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Atomic # 16 Polarization: -7.57 SS G_CDS: -1.25 Total: -8.82 kcal Total: -64.37 0.70 -63.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885832102.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.395 kcal (2) G-P(sol) polarization free energy of solvation -64.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds