Wall clock time and date at job start Mon Mar 30 2020 02:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00262 * 2 1 4 4 O 1.20828 * 119.99845 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00154 * 179.97438 * 3 2 1 6 6 C 1.50706 * 109.46817 * 179.97438 * 5 3 2 7 7 O 1.21279 * 120.00072 * 359.97438 * 6 5 3 8 8 N 1.34777 * 119.99762 * 179.97438 * 6 5 3 9 9 C 1.47071 * 136.05521 * 359.63728 * 8 6 5 10 10 C 1.53759 * 87.88734 * 152.95984 * 9 8 6 11 11 C 1.50703 * 114.26721 * 139.78869 * 10 9 8 12 12 H 1.07990 * 119.99983 * 266.47202 * 11 10 9 13 13 C 1.37872 * 119.99525 * 86.47381 * 11 10 9 14 14 N 1.31513 * 120.00614 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99734 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47231 * 89.99872 * 15 13 11 17 17 H 1.48500 * 109.47328 * 210.00144 * 15 13 11 18 18 H 1.48503 * 109.47121 * 330.00261 * 15 13 11 19 19 C 1.47060 * 136.05949 * 180.02562 * 8 6 5 20 20 H 1.09005 * 109.47388 * 300.00642 * 1 2 3 21 21 H 1.09000 * 109.47349 * 59.99884 * 1 2 3 22 22 H 1.08994 * 109.47294 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46670 * 60.00014 * 5 3 2 24 24 H 1.09000 * 109.47247 * 299.99728 * 5 3 2 25 25 H 1.08999 * 113.46214 * 267.68554 * 9 8 6 26 26 H 1.08997 * 113.47159 * 38.12653 * 9 8 6 27 27 H 1.09005 * 114.38956 * 272.67092 * 10 9 8 28 28 H 0.96998 * 120.00144 * 180.02562 * 14 13 11 29 29 H 1.09004 * 113.46886 * 321.86763 * 19 8 6 30 30 H 1.08994 * 113.47088 * 92.24425 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 3.9936 2.7201 -0.0002 7 8 3.1583 3.5993 -0.0016 8 7 5.3040 3.0353 0.0007 9 6 6.5722 2.2908 0.0088 10 6 7.2179 3.4948 -0.6966 11 6 8.6019 3.8318 -0.2046 12 1 8.7337 4.5680 0.5744 13 6 9.6998 3.2003 -0.7493 14 7 9.5394 2.3042 -1.6984 15 14 11.4155 3.6185 -0.1400 16 1 11.7715 2.7230 0.9897 17 1 12.3914 3.4346 -1.2441 18 1 11.4473 5.0306 0.3187 19 6 6.0948 4.2752 0.0009 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.9563 0.7805 -0.8892 24 1 3.9557 0.7809 0.8908 25 1 6.9646 2.1128 1.0100 26 1 6.5499 1.3885 -0.6023 27 1 7.1401 3.4745 -1.7837 28 1 10.3118 1.8596 -2.0813 29 1 5.6656 5.0639 -0.6171 30 1 6.3605 4.6205 0.9999 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912395849.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:56 Heat of formation + Delta-G solvation = -81.398938 kcal Electronic energy + Delta-G solvation = -15375.444468 eV Core-core repulsion = 12558.679350 eV Total energy + Delta-G solvation = -2816.765119 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.50991 -39.26255 -37.23757 -36.01382 -32.73307 -31.31189 -28.93387 -27.35892 -25.07405 -24.96657 -21.67350 -20.25438 -18.18051 -17.64177 -16.84520 -16.55656 -16.39837 -15.89319 -14.99484 -14.70489 -14.53351 -13.84620 -13.32749 -12.98654 -12.42646 -12.22679 -12.02555 -11.94003 -11.55756 -11.27216 -10.99712 -10.82058 -10.77120 -10.44073 -10.30039 -9.57811 -9.23383 -8.96553 -8.61142 -7.89017 -6.21446 -4.27103 2.33637 2.53909 3.11575 3.22073 3.30147 3.33110 3.65636 4.31132 4.65330 4.99621 5.04069 5.09329 5.09794 5.26927 5.34611 5.45036 5.99639 6.14770 6.22036 6.38112 6.42784 6.51724 6.61872 6.76229 7.52504 7.76512 7.87614 8.14701 8.47433 8.71471 8.77315 9.40100 10.88315 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.065807 B = 0.005110 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.385158 B = 5478.489999 C = 5758.285227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.366 6.366 3 C 0.458 3.542 4 O -0.462 6.462 5 C -0.130 4.130 6 C 0.530 3.470 7 O -0.526 6.526 8 N -0.645 5.645 9 C 0.095 3.905 10 C 0.035 3.965 11 C -0.518 4.518 12 H 0.064 0.936 13 C 0.069 3.931 14 N -0.886 5.886 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.103 3.897 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.099 0.901 23 H 0.131 0.869 24 H 0.129 0.871 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.264 0.736 29 H 0.058 0.942 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.487 -6.520 2.988 11.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.284 6.284 3 C 0.298 3.702 4 O -0.345 6.345 5 C -0.170 4.170 6 C 0.317 3.683 7 O -0.403 6.403 8 N -0.381 5.381 9 C -0.028 4.028 10 C 0.015 3.985 11 C -0.556 4.556 12 H 0.082 0.918 13 C -0.135 4.135 14 N -0.523 5.523 15 Si 0.723 3.277 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.019 4.019 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.117 0.883 23 H 0.149 0.851 24 H 0.147 0.853 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.314 -5.906 2.858 12.224 hybrid contribution 0.808 -0.069 0.352 0.884 sum -9.506 -5.975 3.210 11.678 Atomic orbital electron populations 1.23204 0.76551 1.03337 1.02537 1.86484 1.23233 1.33696 1.84942 1.23082 0.91372 0.81555 0.74182 1.90810 1.66264 1.35501 1.41928 1.21133 0.89524 0.98462 1.07884 1.19278 0.81313 0.89485 0.78247 1.90802 1.49976 1.49430 1.50069 1.49971 1.03316 1.13674 1.71094 1.23718 0.79000 0.99125 1.00911 1.20403 0.91916 0.89556 0.96590 1.20914 0.89733 1.23726 1.21227 0.91791 1.25021 0.99423 0.94666 0.94355 1.69944 1.30896 1.25807 1.25643 0.86530 0.83653 0.79024 0.78457 1.20499 1.21126 1.19679 1.23348 0.89758 0.88122 1.00639 0.92040 0.91988 0.88262 0.85147 0.85338 0.90619 0.92018 0.91239 0.92598 0.92390 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.43 16 2 O -0.37 -4.72 10.56 -39.26 -0.41 -5.14 16 3 C 0.46 7.21 7.95 36.01 0.29 7.50 16 4 O -0.46 -9.13 13.93 -26.86 -0.37 -9.51 16 5 C -0.13 -1.88 6.13 -29.03 -0.18 -2.06 16 6 C 0.53 10.38 8.07 -10.98 -0.09 10.29 16 7 O -0.53 -12.43 14.96 -18.96 -0.28 -12.71 16 8 N -0.65 -12.82 3.69 -185.05 -0.68 -13.51 16 9 C 0.09 1.88 8.00 -8.37 -0.07 1.82 16 10 C 0.03 0.79 3.79 -91.11 -0.35 0.44 16 11 C -0.52 -12.88 8.83 -34.44 -0.30 -13.18 16 12 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -23.55 13.26 55.43 0.74 -22.81 16 15 Si 0.90 19.66 29.54 -169.99 -5.02 14.64 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 C 0.10 2.13 8.17 -8.50 -0.07 2.06 16 20 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 21 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 22 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 24 H 0.13 1.50 8.14 -51.93 -0.42 1.07 16 25 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.07 1.73 8.11 -51.93 -0.42 1.31 16 28 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 LS Contribution 271.63 15.07 4.09 4.09 Total: -1.00 -31.29 271.63 -5.51 -36.80 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -3.77 Total: -1.82 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 0.20 Total: 9.96 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.05 Total: -36.32 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -1.07 Total: -27.35 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.29 -5.51 -36.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912395849.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.604 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds