Wall clock time and date at job start Mon Mar 30 2020 02:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.45748 * 117.94642 * 2 1 4 4 C 1.52923 * 110.48473 * 160.92379 * 3 2 1 5 5 C 1.53342 * 108.67596 * 50.75210 * 4 3 2 6 6 C 1.53070 * 108.42467 * 292.46935 * 5 4 3 7 7 H 1.08996 * 109.39726 * 288.85471 * 6 5 4 8 8 C 1.50704 * 109.39950 * 169.02760 * 6 5 4 9 9 O 1.21205 * 119.99963 * 359.83029 * 8 6 5 10 10 O 1.34315 * 119.99641 * 179.82313 * 8 6 5 11 11 C 1.34916 * 116.99479 * 179.97438 * 10 8 6 12 12 H 1.08002 * 120.00606 * 0.02562 * 11 10 8 13 13 C 1.38759 * 119.99518 * 179.72609 * 11 10 8 14 14 N 1.31434 * 120.00209 * 0.27857 * 13 11 10 15 15 Si 1.86803 * 119.99869 * 180.27980 * 13 11 10 16 16 H 1.48496 * 109.47141 * 59.99766 * 15 13 11 17 17 H 1.48490 * 109.47071 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46993 * 300.00043 * 15 13 11 19 19 C 1.33234 * 117.98036 * 180.02562 * 2 1 3 20 20 O 1.21285 * 118.15948 * 2.22224 * 19 2 1 21 21 H 1.08996 * 109.46959 * 90.00072 * 1 2 3 22 22 H 1.08996 * 109.47018 * 210.00251 * 1 2 3 23 23 H 1.08997 * 109.47332 * 330.00272 * 1 2 3 24 24 H 1.09003 * 109.30453 * 40.61382 * 3 2 1 25 25 H 1.09006 * 109.13356 * 281.12599 * 3 2 1 26 26 H 1.08996 * 109.60644 * 290.99271 * 4 3 2 27 27 H 1.09002 * 109.73455 * 170.58839 * 4 3 2 28 28 H 1.09001 * 109.67614 * 172.73506 * 5 4 3 29 29 H 1.09005 * 109.67438 * 52.20077 * 5 4 3 30 30 H 0.96996 * 120.00346 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5949 1.1258 0.4682 5 6 4.2493 -0.0015 -0.3396 6 6 3.5838 -1.3241 0.0487 7 1 3.8868 -1.5990 1.0590 8 6 4.0130 -2.4018 -0.9134 9 8 4.7723 -2.1372 -1.8203 10 8 3.5542 -3.6555 -0.7656 11 6 3.9770 -4.5718 -1.6610 12 1 4.6544 -4.2826 -2.4509 13 6 3.5463 -5.8873 -1.5634 14 7 2.7222 -6.2393 -0.6019 15 14 4.1378 -7.1578 -2.7985 16 1 5.6179 -7.2591 -2.7341 17 1 3.5363 -8.4771 -2.4780 18 1 3.7288 -6.7469 -4.1657 19 6 2.0901 -1.1766 -0.0005 20 8 1.4151 -2.1834 -0.0424 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 1.6271 1.9718 0.6697 25 1 2.1400 1.6963 -1.0105 26 1 3.6101 0.8725 1.5282 27 1 4.1402 2.0557 0.3065 28 1 5.3143 -0.0457 -0.1117 29 1 4.1088 0.1812 -1.4050 30 1 2.4208 -7.1588 -0.5339 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922962602.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:29 Heat of formation + Delta-G solvation = -110.370040 kcal Electronic energy + Delta-G solvation = -16186.467175 eV Core-core repulsion = 13368.445775 eV Total energy + Delta-G solvation = -2818.021400 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.41612 -38.54114 -36.25474 -35.16861 -33.60467 -32.02662 -29.81269 -26.91755 -25.76805 -24.28631 -22.02999 -20.39246 -18.36376 -17.62847 -16.96487 -16.21471 -16.16793 -15.33211 -14.59920 -14.29931 -14.11855 -13.98278 -13.35197 -13.12210 -12.47458 -12.45531 -12.07836 -11.69098 -11.56960 -11.13215 -11.11123 -11.07433 -10.78557 -10.38562 -10.28490 -9.69670 -9.23757 -8.94245 -8.50205 -8.45611 -6.27909 -3.95842 2.91777 3.12838 3.24003 3.25476 3.29586 3.67109 4.01721 4.50685 4.72680 4.80127 4.93846 5.01737 5.26480 5.37969 5.42743 5.53875 5.55896 5.71380 5.79261 5.84102 5.99794 6.13618 6.39515 6.61251 6.83509 7.47698 7.65229 8.05316 8.57712 8.78218 9.18138 9.98622 10.88853 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.042406 B = 0.007852 C = 0.006976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.130414 B = 3565.225155 C = 4012.697449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.615 5.615 3 C 0.115 3.885 4 C -0.135 4.135 5 C -0.104 4.104 6 C -0.085 4.085 7 H 0.124 0.876 8 C 0.404 3.596 9 O -0.557 6.557 10 O -0.185 6.185 11 C -0.385 4.385 12 H 0.094 0.906 13 C 0.044 3.956 14 N -0.853 5.853 15 Si 0.943 3.057 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.270 1.270 19 C 0.515 3.485 20 O -0.503 6.503 21 H 0.052 0.948 22 H 0.079 0.921 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.471 14.616 3.496 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.352 5.352 3 C -0.008 4.008 4 C -0.173 4.173 5 C -0.142 4.142 6 C -0.107 4.107 7 H 0.141 0.859 8 C 0.250 3.750 9 O -0.456 6.456 10 O -0.090 6.090 11 C -0.461 4.461 12 H 0.111 0.889 13 C -0.161 4.161 14 N -0.489 5.489 15 Si 0.767 3.233 16 H -0.195 1.195 17 H -0.204 1.204 18 H -0.195 1.195 19 C 0.301 3.699 20 O -0.376 6.376 21 H 0.071 0.929 22 H 0.098 0.902 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.760 13.881 3.335 14.384 hybrid contribution 0.257 -0.492 -0.537 0.772 sum -1.502 13.390 2.798 13.761 Atomic orbital electron populations 1.21641 0.79701 1.02883 1.01899 1.47202 1.07182 1.05825 1.74943 1.21400 0.93300 0.84721 1.01369 1.21914 0.94699 0.99953 1.00745 1.21514 1.00306 0.90914 1.01472 1.20865 0.92789 0.95193 1.01875 0.85858 1.22235 0.82308 0.84774 0.85728 1.90542 1.37738 1.82864 1.34445 1.83978 1.59678 1.15579 1.49756 1.21209 1.28865 0.87373 1.08689 0.88852 1.25356 0.96004 0.97086 0.97703 1.70038 1.29816 1.18627 1.30417 0.85770 0.78971 0.78702 0.79823 1.19496 1.20374 1.19538 1.19705 0.89972 0.83029 0.77150 1.90892 1.65161 1.35031 1.46468 0.92921 0.90180 0.91658 0.90880 0.91903 0.90874 0.89497 0.90015 0.90044 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 10.22 59.85 0.61 1.68 16 2 N -0.62 -9.33 3.21 -182.89 -0.59 -9.91 16 3 C 0.12 1.22 6.39 -4.49 -0.03 1.19 16 4 C -0.14 -1.39 6.02 -26.59 -0.16 -1.55 16 5 C -0.10 -1.55 4.78 -26.52 -0.13 -1.68 16 6 C -0.09 -1.68 2.86 -93.14 -0.27 -1.94 16 7 H 0.12 2.20 8.14 -51.93 -0.42 1.77 16 8 C 0.40 10.69 7.09 36.01 0.26 10.94 16 9 O -0.56 -15.47 15.03 -19.05 -0.29 -15.75 16 10 O -0.19 -5.76 8.71 -26.71 -0.23 -5.99 16 11 C -0.38 -12.13 9.64 30.92 0.30 -11.83 16 12 H 0.09 2.91 6.86 -52.49 -0.36 2.55 16 13 C 0.04 1.31 5.49 -17.53 -0.10 1.21 16 14 N -0.85 -26.67 13.67 55.48 0.76 -25.91 16 15 Si 0.94 22.35 29.55 -169.99 -5.02 17.32 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 C 0.52 10.45 7.03 -11.93 -0.08 10.36 16 20 O -0.50 -12.85 14.84 -11.66 -0.17 -13.02 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.08 1.20 7.20 -51.93 -0.37 0.83 16 23 H 0.06 0.60 7.86 -51.93 -0.41 0.19 16 24 H 0.07 0.57 7.92 -51.93 -0.41 0.16 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.33 7.72 -51.93 -0.40 0.93 16 30 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 260.56 15.07 3.93 3.93 Total: -1.00 -38.23 260.56 -4.84 -43.07 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -3.62 Total: -2.09 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 0.40 Total: 8.37 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.17 Total: -35.83 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.69 Total: -34.77 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -38.23 -4.84 -43.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922962602.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.300 kcal (2) G-P(sol) polarization free energy of solvation -38.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds