Wall clock time and date at job start Mon Mar 30 2020 03:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47130 * 2 1 4 4 C 1.47057 * 125.40952 * 90.00073 * 3 2 1 5 5 C 1.54105 * 103.99235 * 179.97438 * 4 3 2 6 6 H 1.09001 * 110.54910 * 241.47819 * 5 4 3 7 7 C 1.50703 * 110.55110 * 118.66407 * 5 4 3 8 8 O 1.21289 * 120.00137 * 260.00316 * 7 5 4 9 9 N 1.34776 * 119.99499 * 79.99751 * 7 5 4 10 10 C 1.37098 * 119.99554 * 179.97438 * 9 7 5 11 11 H 1.08000 * 120.00068 * 0.02562 * 10 9 7 12 12 C 1.38948 * 120.00115 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99716 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00329 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46859 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47105 * 120.00197 * 14 12 10 17 17 H 1.48499 * 109.47197 * 240.00223 * 14 12 10 18 18 N 1.47394 * 103.70056 * 0.10684 * 5 4 3 19 19 C 1.33947 * 109.21036 * 359.88525 * 18 5 4 20 20 O 1.21589 * 123.04015 * 180.02562 * 19 18 5 21 21 H 1.09000 * 109.47340 * 300.00219 * 1 2 3 22 22 H 1.09002 * 109.46843 * 59.99862 * 1 2 3 23 23 H 1.09000 * 109.47150 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47340 * 239.99781 * 2 1 3 25 25 H 1.09001 * 109.47326 * 120.00351 * 2 1 3 26 26 H 1.09002 * 110.54831 * 298.59477 * 4 3 2 27 27 H 1.08997 * 110.54826 * 61.25951 * 4 3 2 28 28 H 0.97000 * 120.00314 * 0.02562 * 9 7 5 29 29 H 0.97001 * 120.00366 * 179.97438 * 13 12 10 30 30 H 0.97000 * 125.37712 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3024 2.1845 1.1986 5 6 2.7812 3.5369 0.6358 6 1 3.8047 3.7412 0.9501 7 6 1.8607 4.6474 1.0725 8 8 1.0144 5.0678 0.3122 9 7 1.9779 5.1731 2.3079 10 6 1.1408 6.1837 2.7050 11 1 0.3873 6.5581 2.0280 12 6 1.2619 6.7262 3.9784 13 7 2.1791 6.2709 4.8020 14 14 0.1210 8.1026 4.5198 15 1 -0.8164 8.4314 3.4159 16 1 -0.6511 7.6660 5.7107 17 1 0.9231 9.3043 4.8631 18 7 2.7130 3.3511 -0.8247 19 6 2.2762 2.1133 -1.0917 20 8 2.1263 1.6927 -2.2226 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5139 0.8899 26 1 1.3986 2.3169 1.7934 27 1 3.0866 1.7181 1.7947 28 1 2.6549 4.8371 2.9159 29 1 2.2640 6.6498 5.6909 30 1 2.9485 4.0191 -1.4874 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953018639.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:16 Heat of formation + Delta-G solvation = -53.190358 kcal Electronic energy + Delta-G solvation = -15853.488547 eV Core-core repulsion = 13070.239395 eV Total energy + Delta-G solvation = -2783.249152 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.86021 -38.11170 -35.82709 -34.65147 -33.95654 -31.44332 -30.34026 -28.72863 -25.25454 -23.74627 -22.98557 -19.90014 -19.62917 -18.16730 -17.20025 -16.72741 -15.88127 -15.29085 -14.69869 -14.34765 -14.25447 -13.76844 -13.54030 -13.25278 -12.99220 -12.81466 -12.10091 -11.93201 -11.72145 -11.61147 -11.17448 -10.98575 -10.43635 -10.36158 -9.90527 -9.67376 -9.29380 -8.68187 -8.13610 -8.12618 -6.56231 -3.97538 2.80169 3.07523 3.20226 3.26897 3.45939 3.63141 3.97815 4.17917 4.72279 4.76831 4.91483 5.13243 5.25070 5.39324 5.44711 5.56751 5.64023 5.75853 5.88671 6.08573 6.26065 6.31381 6.94018 7.42524 7.44274 7.76026 7.89958 8.42687 8.91127 9.02652 9.34970 9.85012 10.60550 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.043193 B = 0.006492 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.096379 B = 4312.005467 C = 4468.615217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.150 3.850 3 N -0.634 5.634 4 C 0.106 3.894 5 C 0.112 3.888 6 H 0.102 0.898 7 C 0.425 3.575 8 O -0.579 6.579 9 N -0.551 5.551 10 C -0.303 4.303 11 H 0.105 0.895 12 C 0.027 3.973 13 N -0.896 5.896 14 Si 0.930 3.070 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.711 5.711 19 C 0.706 3.294 20 O -0.598 6.598 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.394 0.606 29 H 0.273 0.727 30 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 -9.180 -1.342 9.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.028 3.972 3 N -0.373 5.373 4 C -0.018 4.018 5 C 0.001 3.999 6 H 0.120 0.880 7 C 0.209 3.791 8 O -0.464 6.464 9 N -0.187 5.187 10 C -0.432 4.432 11 H 0.123 0.877 12 C -0.176 4.176 13 N -0.536 5.536 14 Si 0.757 3.243 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.371 5.371 19 C 0.407 3.593 20 O -0.478 6.478 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.228 0.772 29 H 0.083 0.917 30 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 2.015 -9.213 -2.205 9.685 hybrid contribution -0.038 0.954 0.712 1.191 sum 1.976 -8.259 -1.493 8.622 Atomic orbital electron populations 1.22206 0.96088 1.01874 1.02963 1.21116 0.94086 0.79296 1.02744 1.47172 1.70205 1.14051 1.05914 1.22339 1.01980 0.88731 0.88796 1.21824 1.00597 0.95305 0.82158 0.87989 1.19884 0.88244 0.86865 0.84129 1.90574 1.38110 1.64006 1.53662 1.41868 1.32373 1.32523 1.11912 1.19780 1.13549 1.11337 0.98572 0.87730 1.25289 0.97553 0.99069 0.95703 1.69605 1.33195 1.42668 1.08170 0.85782 0.79707 0.80062 0.78730 1.19148 1.20602 1.20591 1.44831 1.71128 1.14182 1.06915 1.15798 0.77629 0.81442 0.84478 1.90900 1.61214 1.74573 1.21067 0.92285 0.92075 0.91630 0.90013 0.90401 0.89635 0.89592 0.77245 0.91662 0.72882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.15 1.84 6.72 -4.04 -0.03 1.81 16 3 N -0.63 -9.86 2.96 -178.81 -0.53 -10.39 16 4 C 0.11 1.53 7.31 -3.16 -0.02 1.50 16 5 C 0.11 1.85 4.19 -68.02 -0.28 1.57 16 6 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 7 C 0.42 9.39 6.91 -10.98 -0.08 9.31 16 8 O -0.58 -15.38 16.14 5.55 0.09 -15.29 16 9 N -0.55 -12.84 5.29 -10.96 -0.06 -12.90 16 10 C -0.30 -7.98 9.68 -14.93 -0.14 -8.13 16 11 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 12 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 13 N -0.90 -22.87 13.05 55.50 0.72 -22.14 16 14 Si 0.93 20.10 29.55 -169.99 -5.02 15.07 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 18 N -0.71 -12.49 5.62 -59.10 -0.33 -12.82 16 19 C 0.71 13.25 8.60 -88.40 -0.76 12.49 16 20 O -0.60 -12.96 17.53 5.29 0.09 -12.87 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.08 1.02 7.92 -51.93 -0.41 0.61 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.32 7.72 -51.93 -0.40 0.92 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.39 8.57 7.90 -40.82 -0.32 8.25 16 29 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.43 7.14 8.96 -40.82 -0.37 6.78 16 LS Contribution 267.42 15.07 4.03 4.03 Total: -1.00 -32.72 267.42 -5.58 -38.31 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -3.55 Total: 11.60 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: -1.03 Total: 17.39 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.19 Total: -58.25 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: 0.18 Total: -28.16 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.72 -5.58 -38.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953018639.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.882 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds