Wall clock time and date at job start Mon Mar 30 2020 03:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47130 * 2 1 4 4 C 1.47057 * 125.40952 * 90.00073 * 3 2 1 5 5 C 1.54105 * 103.99235 * 179.97438 * 4 3 2 6 6 H 1.09001 * 110.54910 * 241.47819 * 5 4 3 7 7 C 1.50703 * 110.55110 * 118.66407 * 5 4 3 8 8 O 1.21289 * 120.00137 * 260.00316 * 7 5 4 9 9 N 1.34776 * 119.99499 * 79.99751 * 7 5 4 10 10 C 1.37098 * 119.99554 * 179.97438 * 9 7 5 11 11 H 1.08000 * 120.00068 * 0.02562 * 10 9 7 12 12 C 1.38948 * 120.00115 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99716 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00329 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46859 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47105 * 120.00197 * 14 12 10 17 17 H 1.48499 * 109.47197 * 240.00223 * 14 12 10 18 18 N 1.47394 * 103.70056 * 0.10684 * 5 4 3 19 19 C 1.33947 * 109.21036 * 359.88525 * 18 5 4 20 20 O 1.21589 * 123.04015 * 180.02562 * 19 18 5 21 21 H 1.09000 * 109.47340 * 300.00219 * 1 2 3 22 22 H 1.09002 * 109.46843 * 59.99862 * 1 2 3 23 23 H 1.09000 * 109.47150 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47340 * 239.99781 * 2 1 3 25 25 H 1.09001 * 109.47326 * 120.00351 * 2 1 3 26 26 H 1.09002 * 110.54831 * 298.59477 * 4 3 2 27 27 H 1.08997 * 110.54826 * 61.25951 * 4 3 2 28 28 H 0.97000 * 120.00314 * 0.02562 * 9 7 5 29 29 H 0.97001 * 120.00366 * 179.97438 * 13 12 10 30 30 H 0.97000 * 125.37712 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3024 2.1845 1.1986 5 6 2.7812 3.5369 0.6358 6 1 3.8047 3.7412 0.9501 7 6 1.8607 4.6474 1.0725 8 8 1.0144 5.0678 0.3122 9 7 1.9779 5.1731 2.3079 10 6 1.1408 6.1837 2.7050 11 1 0.3873 6.5581 2.0280 12 6 1.2619 6.7262 3.9784 13 7 2.1791 6.2709 4.8020 14 14 0.1210 8.1026 4.5198 15 1 -0.8164 8.4314 3.4159 16 1 -0.6511 7.6660 5.7107 17 1 0.9231 9.3043 4.8631 18 7 2.7130 3.3511 -0.8247 19 6 2.2762 2.1133 -1.0917 20 8 2.1263 1.6927 -2.2226 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5139 0.8899 26 1 1.3986 2.3169 1.7934 27 1 3.0866 1.7181 1.7947 28 1 2.6549 4.8371 2.9159 29 1 2.2640 6.6498 5.6909 30 1 2.9485 4.0191 -1.4874 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953018639.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:16 Heat of formation + Delta-G solvation = -78.982474 kcal Electronic energy + Delta-G solvation = -15854.606977 eV Core-core repulsion = 13070.239395 eV Total energy + Delta-G solvation = -2784.367582 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.24474 -39.88361 -37.31820 -36.15279 -35.60567 -33.35686 -31.49177 -30.16189 -27.02769 -25.00493 -24.30677 -21.35694 -21.13898 -20.04852 -18.59886 -18.30628 -17.21117 -16.90907 -16.34356 -15.92650 -15.69932 -15.27959 -15.09751 -14.55009 -14.46411 -14.15244 -13.55467 -13.24231 -13.22055 -12.91439 -12.76153 -12.43403 -12.12935 -11.99685 -11.56237 -11.39975 -10.93828 -10.21306 -10.05423 -9.50887 -8.49721 -5.98334 1.33705 1.44036 1.54384 1.57794 1.92961 2.04551 2.28849 2.75124 3.12177 3.20527 3.51742 3.87372 4.07309 4.25858 4.34777 4.48994 4.53458 4.64909 4.72694 4.87629 5.13839 5.29151 5.40478 5.73700 5.94182 6.10409 6.41494 6.55040 7.08637 7.46165 7.52969 8.03899 8.66447 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.043193 B = 0.006492 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.096379 B = 4312.005467 C = 4468.615217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.142 3.858 3 N -0.630 5.630 4 C 0.108 3.892 5 C 0.120 3.880 6 H 0.144 0.856 7 C 0.426 3.574 8 O -0.630 6.630 9 N -0.552 5.552 10 C -0.336 4.336 11 H 0.076 0.924 12 C -0.002 4.002 13 N -0.909 5.909 14 Si 0.988 3.012 15 H -0.278 1.278 16 H -0.270 1.270 17 H -0.270 1.270 18 N -0.713 5.713 19 C 0.694 3.306 20 O -0.635 6.635 21 H 0.052 0.948 22 H 0.026 0.974 23 H 0.096 0.904 24 H 0.079 0.921 25 H 0.120 0.880 26 H 0.074 0.926 27 H 0.138 0.862 28 H 0.402 0.598 29 H 0.280 0.720 30 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.558 -10.193 0.251 10.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.021 3.979 3 N -0.368 5.368 4 C -0.015 4.015 5 C 0.010 3.990 6 H 0.162 0.838 7 C 0.211 3.789 8 O -0.517 6.517 9 N -0.189 5.189 10 C -0.466 4.466 11 H 0.094 0.906 12 C -0.204 4.204 13 N -0.549 5.549 14 Si 0.812 3.188 15 H -0.203 1.203 16 H -0.195 1.195 17 H -0.195 1.195 18 N -0.372 5.372 19 C 0.395 3.605 20 O -0.518 6.518 21 H 0.071 0.929 22 H 0.045 0.955 23 H 0.115 0.885 24 H 0.097 0.903 25 H 0.138 0.862 26 H 0.092 0.908 27 H 0.155 0.845 28 H 0.238 0.762 29 H 0.090 0.910 30 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 2.926 -10.251 -0.559 10.675 hybrid contribution -0.332 1.251 0.205 1.310 sum 2.594 -9.001 -0.354 9.374 Atomic orbital electron populations 1.22181 0.96329 1.03309 1.00898 1.21462 0.93882 0.77844 1.04682 1.47396 1.69311 1.14890 1.05216 1.22509 1.03140 0.87492 0.88360 1.21910 1.01127 0.94377 0.81586 0.83834 1.20860 0.87885 0.87094 0.83017 1.90548 1.40440 1.65837 1.54916 1.41827 1.32255 1.32193 1.12584 1.19648 1.14533 1.13375 0.99046 0.90645 1.25929 0.98628 1.00600 0.95209 1.69636 1.33571 1.43195 1.08478 0.84949 0.77988 0.77832 0.78064 1.20264 1.19471 1.19537 1.44921 1.70766 1.14030 1.07482 1.16111 0.77724 0.81917 0.84792 1.90861 1.62815 1.75381 1.22750 0.92863 0.95477 0.88512 0.90272 0.86186 0.90756 0.84471 0.76248 0.91009 0.72866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 10.24 71.98 0.74 -3.15 16 2 C 0.14 3.12 6.72 86.38 0.58 3.70 16 3 N -0.63 -18.28 2.96 -838.36 -2.48 -20.76 16 4 C 0.11 2.79 7.31 86.65 0.63 3.43 16 5 C 0.12 3.73 4.19 44.45 0.19 3.92 16 6 H 0.14 3.37 8.14 -2.39 -0.02 3.35 16 7 C 0.43 18.73 6.91 87.66 0.61 19.33 16 8 O -0.63 -34.29 16.14 -3.06 -0.05 -34.34 16 9 N -0.55 -25.59 5.29 -306.99 -1.62 -27.21 16 10 C -0.34 -17.94 9.68 84.04 0.81 -17.13 16 11 H 0.08 4.41 7.16 -2.91 -0.02 4.39 16 12 C 0.00 -0.11 5.50 84.93 0.47 0.35 16 13 N -0.91 -45.16 13.05 21.66 0.28 -44.87 16 14 Si 0.99 40.72 29.55 68.60 2.03 42.74 16 15 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 16 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 17 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 18 N -0.71 -24.51 5.62 -459.63 -2.58 -27.09 16 19 C 0.69 25.58 8.60 179.57 1.55 27.12 16 20 O -0.64 -27.75 17.53 -4.00 -0.07 -27.82 16 21 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.08 1.82 7.92 -2.39 -0.02 1.80 16 25 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 2.13 7.72 -2.39 -0.02 2.11 16 27 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.40 17.00 7.90 -92.71 -0.73 16.27 16 29 H 0.28 13.02 8.31 -92.71 -0.77 12.25 16 30 H 0.43 14.31 8.96 -92.71 -0.83 13.47 16 Total: -1.00 -72.34 267.42 0.69 -71.65 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -0.39 Total: 30.12 kcal Atomic # 6 Polarization: 32.01 SS G_CDS: 5.57 Total: 37.58 kcal Atomic # 7 Polarization: -113.53 SS G_CDS: -6.40 Total: -119.93 kcal Atomic # 8 Polarization: -62.04 SS G_CDS: -0.12 Total: -62.16 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.74 kcal Total: -72.34 0.69 -71.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953018639.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.328 kcal (2) G-P(sol) polarization free energy of solvation -72.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds