Wall clock time and date at job start Mon Mar 30 2020 02:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86802 * 120.00186 * 2 1 4 4 H 1.48496 * 109.47389 * 264.60419 * 3 2 1 5 5 H 1.48502 * 109.46925 * 24.60898 * 3 2 1 6 6 H 1.48505 * 109.47093 * 144.60230 * 3 2 1 7 7 C 1.40049 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99977 * 351.73818 * 7 2 1 9 9 C 1.46376 * 120.00384 * 171.73941 * 7 2 1 10 10 O 1.21689 * 119.99559 * 339.40675 * 9 7 2 11 11 N 1.34774 * 120.00361 * 159.41295 * 9 7 2 12 12 C 1.46500 * 120.00280 * 175.12415 * 11 9 7 13 13 C 1.52993 * 109.47155 * 275.08879 * 12 11 9 14 14 O 1.42902 * 109.47458 * 65.41110 * 13 12 11 15 15 C 1.46503 * 119.99702 * 355.12085 * 11 9 7 16 16 C 1.54262 * 110.03156 * 231.54377 * 15 11 9 17 17 C 1.54973 * 104.15867 * 217.13631 * 16 15 11 18 18 C 1.54891 * 102.77522 * 37.89010 * 17 16 15 19 19 C 1.53879 * 110.02995 * 114.32544 * 15 11 9 20 20 H 0.97007 * 119.99751 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46836 * 35.08496 * 12 11 9 22 22 H 1.08995 * 109.46768 * 155.08450 * 12 11 9 23 23 H 1.09000 * 109.47304 * 185.41539 * 13 12 11 24 24 H 1.09009 * 109.47201 * 305.41239 * 13 12 11 25 25 H 0.96698 * 114.00352 * 180.02562 * 14 13 12 26 26 H 1.08997 * 110.01645 * 352.93737 * 15 11 9 27 27 H 1.08998 * 110.48821 * 335.78065 * 16 15 11 28 28 H 1.08994 * 110.48961 * 98.43110 * 16 15 11 29 29 H 1.08989 * 110.72095 * 279.57416 * 17 16 15 30 30 H 1.09000 * 110.92115 * 156.29157 * 17 16 15 31 31 H 1.09000 * 110.48493 * 203.40030 * 18 17 16 32 32 H 1.09005 * 110.60102 * 80.81821 * 18 17 16 33 33 H 1.09000 * 110.03529 * 238.56823 * 19 15 11 34 34 H 1.08999 * 110.03238 * 0.02562 * 19 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.6023 1.9806 -1.3938 5 1 1.3859 2.6829 0.5830 6 1 3.4766 1.4757 0.8110 7 6 2.0069 -1.2128 -0.0005 8 1 1.4754 -2.1433 0.1334 9 6 3.4593 -1.2194 -0.1827 10 8 4.0124 -0.2646 -0.6957 11 7 4.1839 -2.2829 0.2176 12 6 5.6213 -2.3366 -0.0604 13 6 5.8482 -2.8942 -1.4669 14 8 5.3187 -1.9828 -2.4319 15 6 3.5342 -3.3854 0.9309 16 6 4.3007 -3.6970 2.2328 17 6 4.2248 -5.2399 2.3574 18 6 4.3706 -5.7097 0.8886 19 6 3.5781 -4.6645 0.0766 20 1 -0.4850 0.8401 0.0004 21 1 6.0416 -1.3330 0.0047 22 1 6.1086 -2.9828 0.6697 23 1 6.9168 -3.0244 -1.6382 24 1 5.3451 -3.8566 -1.5618 25 1 5.4273 -2.2728 -3.3479 26 1 2.5009 -3.1243 1.1594 27 1 5.3379 -3.3717 2.1521 28 1 3.8156 -3.2205 3.0846 29 1 3.2627 -5.5468 2.7673 30 1 5.0428 -5.6218 2.9681 31 1 3.9368 -6.7013 0.7604 32 1 5.4186 -5.7112 0.5887 33 1 2.5662 -5.0247 -0.1088 34 1 4.0833 -4.4651 -0.8684 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044414905.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:41 Heat of formation + Delta-G solvation = -95.161153 kcal Electronic energy + Delta-G solvation = -16879.444349 eV Core-core repulsion = 14197.915551 eV Total energy + Delta-G solvation = -2681.528798 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.10111 -36.72244 -36.04239 -33.14909 -32.62494 -29.40641 -28.43529 -26.81227 -25.99139 -22.31966 -20.28793 -20.15648 -18.78491 -17.35961 -16.52859 -15.87720 -15.20724 -14.93775 -14.46545 -14.02859 -13.64574 -13.16366 -13.04259 -12.45149 -12.30949 -11.86206 -11.52609 -11.28222 -11.01877 -10.90372 -10.84619 -10.80519 -10.56123 -10.33181 -10.29473 -10.05100 -9.45930 -9.20035 -8.88361 -7.74149 -7.37808 -6.49364 -4.67031 3.52557 3.57157 3.78546 4.24646 4.35587 4.61907 4.79958 4.96034 4.98499 5.17910 5.50977 5.57399 5.63977 5.76567 5.77938 5.84936 5.93182 5.95227 5.99294 6.05223 6.15033 6.18894 6.33386 6.53522 6.56724 6.70870 6.82849 7.24681 7.79823 8.03338 8.22093 8.44800 8.87192 9.31300 10.26122 10.53096 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.010921 C = 0.008926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.099516 B = 2563.341811 C = 3136.166870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.103 3.897 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.322 1.322 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.087 0.913 9 C 0.564 3.436 10 O -0.595 6.595 11 N -0.622 5.622 12 C 0.120 3.880 13 C 0.056 3.944 14 O -0.540 6.540 15 C 0.145 3.855 16 C -0.138 4.138 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.146 4.146 20 H 0.279 0.721 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.033 0.967 24 H 0.044 0.956 25 H 0.360 0.640 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.803 -10.576 2.168 13.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.113 4.113 3 Si 0.793 3.207 4 H -0.202 1.202 5 H -0.253 1.253 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.105 0.895 9 C 0.371 3.629 10 O -0.484 6.484 11 N -0.355 5.355 12 C -0.004 4.004 13 C -0.023 4.023 14 O -0.342 6.342 15 C 0.040 3.960 16 C -0.177 4.177 17 C -0.160 4.160 18 C -0.160 4.160 19 C -0.184 4.184 20 H 0.089 0.911 21 H 0.094 0.906 22 H 0.093 0.907 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.204 0.796 26 H 0.126 0.874 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.737 -9.681 2.451 13.269 hybrid contribution 0.446 0.087 -0.547 0.711 sum 9.182 -9.594 1.905 13.416 Atomic orbital electron populations 1.69567 1.07826 1.29603 1.39803 1.25673 0.94659 1.01697 0.89306 0.85349 0.77620 0.77986 0.79707 1.20241 1.25299 1.19472 1.20743 0.89003 0.95482 1.51963 0.89496 1.18278 0.87944 0.79886 0.76802 1.90253 1.73222 1.35235 1.49671 1.47642 1.06195 1.21229 1.60420 1.21132 0.84898 1.01717 0.92649 1.22865 0.95415 0.92589 0.91449 1.86930 1.83179 1.47017 1.17047 1.21648 0.98869 0.85944 0.89581 1.22832 1.01013 0.95208 0.98622 1.22455 1.01320 0.95832 0.96421 1.22334 0.99849 0.98335 0.95491 1.22818 1.00429 0.95557 0.99639 0.91097 0.90571 0.90701 0.94872 0.93771 0.79613 0.87374 0.91437 0.91412 0.91503 0.92134 0.92258 0.92297 0.91729 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.51 13.92 55.55 0.77 -23.73 16 2 C 0.10 3.03 5.52 -17.37 -0.10 2.94 16 3 Si 0.96 26.33 25.85 -169.99 -4.39 21.94 16 4 H -0.28 -7.87 7.11 56.52 0.40 -7.47 16 5 H -0.32 -8.31 7.11 56.52 0.40 -7.91 16 6 H -0.27 -7.67 6.83 56.52 0.39 -7.28 16 7 C -0.54 -15.53 8.99 -35.63 -0.32 -15.85 16 8 H 0.09 2.52 6.49 -52.49 -0.34 2.17 16 9 C 0.56 15.46 6.64 -12.99 -0.09 15.37 16 10 O -0.59 -17.92 11.42 -8.41 -0.10 -18.02 16 11 N -0.62 -13.58 2.38 -166.49 -0.40 -13.98 16 12 C 0.12 2.24 5.40 -4.05 -0.02 2.22 16 13 C 0.06 0.93 7.20 37.15 0.27 1.20 16 14 O -0.54 -10.74 12.09 -48.84 -0.59 -11.34 16 15 C 0.14 2.67 3.12 -66.81 -0.21 2.46 16 16 C -0.14 -2.07 6.34 -25.03 -0.16 -2.23 16 17 C -0.12 -1.48 6.91 -24.69 -0.17 -1.65 16 18 C -0.12 -1.50 6.83 -25.07 -0.17 -1.67 16 19 C -0.15 -2.28 6.35 -25.61 -0.16 -2.44 16 20 H 0.28 7.55 8.29 -40.82 -0.34 7.21 16 21 H 0.08 1.60 7.51 -51.93 -0.39 1.21 16 22 H 0.07 1.13 5.94 -51.93 -0.31 0.82 16 23 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.04 0.68 5.26 -51.92 -0.27 0.41 16 25 H 0.36 5.19 9.12 45.56 0.42 5.61 16 26 H 0.11 2.27 5.60 -51.93 -0.29 1.98 16 27 H 0.07 0.98 5.80 -51.93 -0.30 0.68 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.78 8.14 -51.94 -0.42 0.36 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.20 4.69 -51.93 -0.24 0.96 16 LS Contribution 265.70 15.07 4.00 4.00 Total: -1.00 -34.45 265.70 -5.67 -40.12 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -3.84 Total: 0.66 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.13 Total: 0.35 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.38 Total: -37.71 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.69 Total: -29.35 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -4.39 Total: 21.94 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.45 -5.67 -40.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044414905.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.038 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds