Wall clock time and date at job start Mon Mar 30 2020 02:58:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30668 * 1
3 3 Si 1.86802 * 120.00186 * 2 1
4 4 H 1.48496 * 109.47389 * 264.60419 * 3 2 1
5 5 H 1.48502 * 109.46925 * 24.60898 * 3 2 1
6 6 H 1.48505 * 109.47093 * 144.60230 * 3 2 1
7 7 C 1.40049 * 120.00084 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99977 * 351.73818 * 7 2 1
9 9 C 1.46376 * 120.00384 * 171.73941 * 7 2 1
10 10 O 1.21689 * 119.99559 * 339.40675 * 9 7 2
11 11 N 1.34774 * 120.00361 * 159.41295 * 9 7 2
12 12 C 1.46500 * 120.00280 * 175.12415 * 11 9 7
13 13 C 1.52993 * 109.47155 * 275.08879 * 12 11 9
14 14 O 1.42902 * 109.47458 * 65.41110 * 13 12 11
15 15 C 1.46503 * 119.99702 * 355.12085 * 11 9 7
16 16 C 1.54262 * 110.03156 * 231.54377 * 15 11 9
17 17 C 1.54973 * 104.15867 * 217.13631 * 16 15 11
18 18 C 1.54891 * 102.77522 * 37.89010 * 17 16 15
19 19 C 1.53879 * 110.02995 * 114.32544 * 15 11 9
20 20 H 0.97007 * 119.99751 * 359.97438 * 1 2 3
21 21 H 1.08997 * 109.46836 * 35.08496 * 12 11 9
22 22 H 1.08995 * 109.46768 * 155.08450 * 12 11 9
23 23 H 1.09000 * 109.47304 * 185.41539 * 13 12 11
24 24 H 1.09009 * 109.47201 * 305.41239 * 13 12 11
25 25 H 0.96698 * 114.00352 * 180.02562 * 14 13 12
26 26 H 1.08997 * 110.01645 * 352.93737 * 15 11 9
27 27 H 1.08998 * 110.48821 * 335.78065 * 16 15 11
28 28 H 1.08994 * 110.48961 * 98.43110 * 16 15 11
29 29 H 1.08989 * 110.72095 * 279.57416 * 17 16 15
30 30 H 1.09000 * 110.92115 * 156.29157 * 17 16 15
31 31 H 1.09000 * 110.48493 * 203.40030 * 18 17 16
32 32 H 1.09005 * 110.60102 * 80.81821 * 18 17 16
33 33 H 1.09000 * 110.03529 * 238.56823 * 19 15 11
34 34 H 1.08999 * 110.03238 * 0.02562 * 19 15 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2407 1.6177 0.0000
4 1 2.6023 1.9806 -1.3938
5 1 1.3859 2.6829 0.5830
6 1 3.4766 1.4757 0.8110
7 6 2.0069 -1.2128 -0.0005
8 1 1.4754 -2.1433 0.1334
9 6 3.4593 -1.2194 -0.1827
10 8 4.0124 -0.2646 -0.6957
11 7 4.1839 -2.2829 0.2176
12 6 5.6213 -2.3366 -0.0604
13 6 5.8482 -2.8942 -1.4669
14 8 5.3187 -1.9828 -2.4319
15 6 3.5342 -3.3854 0.9309
16 6 4.3007 -3.6970 2.2328
17 6 4.2248 -5.2399 2.3574
18 6 4.3706 -5.7097 0.8886
19 6 3.5781 -4.6645 0.0766
20 1 -0.4850 0.8401 0.0004
21 1 6.0416 -1.3330 0.0047
22 1 6.1086 -2.9828 0.6697
23 1 6.9168 -3.0244 -1.6382
24 1 5.3451 -3.8566 -1.5618
25 1 5.4273 -2.2728 -3.3479
26 1 2.5009 -3.1243 1.1594
27 1 5.3379 -3.3717 2.1521
28 1 3.8156 -3.2205 3.0846
29 1 3.2627 -5.5468 2.7673
30 1 5.0428 -5.6218 2.9681
31 1 3.9368 -6.7013 0.7604
32 1 5.4186 -5.7112 0.5887
33 1 2.5662 -5.0247 -0.1088
34 1 4.0833 -4.4651 -0.8684
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000044414905.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:41
Heat of formation + Delta-G solvation = -95.161153 kcal
Electronic energy + Delta-G solvation = -16879.444349 eV
Core-core repulsion = 14197.915551 eV
Total energy + Delta-G solvation = -2681.528798 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.10111 -36.72244 -36.04239 -33.14909 -32.62494 -29.40641 -28.43529 -26.81227
-25.99139 -22.31966 -20.28793 -20.15648 -18.78491 -17.35961 -16.52859 -15.87720
-15.20724 -14.93775 -14.46545 -14.02859 -13.64574 -13.16366 -13.04259 -12.45149
-12.30949 -11.86206 -11.52609 -11.28222 -11.01877 -10.90372 -10.84619 -10.80519
-10.56123 -10.33181 -10.29473 -10.05100 -9.45930 -9.20035 -8.88361 -7.74149
-7.37808 -6.49364 -4.67031 3.52557 3.57157 3.78546 4.24646 4.35587
4.61907 4.79958 4.96034 4.98499 5.17910 5.50977 5.57399 5.63977
5.76567 5.77938 5.84936 5.93182 5.95227 5.99294 6.05223 6.15033
6.18894 6.33386 6.53522 6.56724 6.70870 6.82849 7.24681 7.79823
8.03338 8.22093 8.44800 8.87192 9.31300 10.26122 10.53096
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.026888 B = 0.010921 C = 0.008926
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1041.099516 B = 2563.341811 C = 3136.166870
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.837 5.837
2 C 0.103 3.897
3 Si 0.961 3.039
4 H -0.276 1.276
5 H -0.322 1.322
6 H -0.269 1.269
7 C -0.536 4.536
8 H 0.087 0.913
9 C 0.564 3.436
10 O -0.595 6.595
11 N -0.622 5.622
12 C 0.120 3.880
13 C 0.056 3.944
14 O -0.540 6.540
15 C 0.145 3.855
16 C -0.138 4.138
17 C -0.122 4.122
18 C -0.122 4.122
19 C -0.146 4.146
20 H 0.279 0.721
21 H 0.076 0.924
22 H 0.075 0.925
23 H 0.033 0.967
24 H 0.044 0.956
25 H 0.360 0.640
26 H 0.108 0.892
27 H 0.067 0.933
28 H 0.067 0.933
29 H 0.066 0.934
30 H 0.060 0.940
31 H 0.059 0.941
32 H 0.058 0.942
33 H 0.064 0.936
34 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.803 -10.576 2.168 13.930
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.468 5.468
2 C -0.113 4.113
3 Si 0.793 3.207
4 H -0.202 1.202
5 H -0.253 1.253
6 H -0.195 1.195
7 C -0.572 4.572
8 H 0.105 0.895
9 C 0.371 3.629
10 O -0.484 6.484
11 N -0.355 5.355
12 C -0.004 4.004
13 C -0.023 4.023
14 O -0.342 6.342
15 C 0.040 3.960
16 C -0.177 4.177
17 C -0.160 4.160
18 C -0.160 4.160
19 C -0.184 4.184
20 H 0.089 0.911
21 H 0.094 0.906
22 H 0.093 0.907
23 H 0.051 0.949
24 H 0.062 0.938
25 H 0.204 0.796
26 H 0.126 0.874
27 H 0.086 0.914
28 H 0.086 0.914
29 H 0.085 0.915
30 H 0.079 0.921
31 H 0.077 0.923
32 H 0.077 0.923
33 H 0.083 0.917
34 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 8.737 -9.681 2.451 13.269
hybrid contribution 0.446 0.087 -0.547 0.711
sum 9.182 -9.594 1.905 13.416
Atomic orbital electron populations
1.69567 1.07826 1.29603 1.39803 1.25673 0.94659 1.01697 0.89306
0.85349 0.77620 0.77986 0.79707 1.20241 1.25299 1.19472 1.20743
0.89003 0.95482 1.51963 0.89496 1.18278 0.87944 0.79886 0.76802
1.90253 1.73222 1.35235 1.49671 1.47642 1.06195 1.21229 1.60420
1.21132 0.84898 1.01717 0.92649 1.22865 0.95415 0.92589 0.91449
1.86930 1.83179 1.47017 1.17047 1.21648 0.98869 0.85944 0.89581
1.22832 1.01013 0.95208 0.98622 1.22455 1.01320 0.95832 0.96421
1.22334 0.99849 0.98335 0.95491 1.22818 1.00429 0.95557 0.99639
0.91097 0.90571 0.90701 0.94872 0.93771 0.79613 0.87374 0.91437
0.91412 0.91503 0.92134 0.92258 0.92297 0.91729 0.90876
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 -24.51 13.92 55.55 0.77 -23.73 16
2 C 0.10 3.03 5.52 -17.37 -0.10 2.94 16
3 Si 0.96 26.33 25.85 -169.99 -4.39 21.94 16
4 H -0.28 -7.87 7.11 56.52 0.40 -7.47 16
5 H -0.32 -8.31 7.11 56.52 0.40 -7.91 16
6 H -0.27 -7.67 6.83 56.52 0.39 -7.28 16
7 C -0.54 -15.53 8.99 -35.63 -0.32 -15.85 16
8 H 0.09 2.52 6.49 -52.49 -0.34 2.17 16
9 C 0.56 15.46 6.64 -12.99 -0.09 15.37 16
10 O -0.59 -17.92 11.42 -8.41 -0.10 -18.02 16
11 N -0.62 -13.58 2.38 -166.49 -0.40 -13.98 16
12 C 0.12 2.24 5.40 -4.05 -0.02 2.22 16
13 C 0.06 0.93 7.20 37.15 0.27 1.20 16
14 O -0.54 -10.74 12.09 -48.84 -0.59 -11.34 16
15 C 0.14 2.67 3.12 -66.81 -0.21 2.46 16
16 C -0.14 -2.07 6.34 -25.03 -0.16 -2.23 16
17 C -0.12 -1.48 6.91 -24.69 -0.17 -1.65 16
18 C -0.12 -1.50 6.83 -25.07 -0.17 -1.67 16
19 C -0.15 -2.28 6.35 -25.61 -0.16 -2.44 16
20 H 0.28 7.55 8.29 -40.82 -0.34 7.21 16
21 H 0.08 1.60 7.51 -51.93 -0.39 1.21 16
22 H 0.07 1.13 5.94 -51.93 -0.31 0.82 16
23 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16
24 H 0.04 0.68 5.26 -51.92 -0.27 0.41 16
25 H 0.36 5.19 9.12 45.56 0.42 5.61 16
26 H 0.11 2.27 5.60 -51.93 -0.29 1.98 16
27 H 0.07 0.98 5.80 -51.93 -0.30 0.68 16
28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
29 H 0.07 0.78 8.14 -51.94 -0.42 0.36 16
30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
34 H 0.07 1.20 4.69 -51.93 -0.24 0.96 16
LS Contribution 265.70 15.07 4.00 4.00
Total: -1.00 -34.45 265.70 -5.67 -40.12
By element:
Atomic # 1 Polarization: 4.50 SS G_CDS: -3.84 Total: 0.66 kcal
Atomic # 6 Polarization: 1.48 SS G_CDS: -1.13 Total: 0.35 kcal
Atomic # 7 Polarization: -38.09 SS G_CDS: 0.38 Total: -37.71 kcal
Atomic # 8 Polarization: -28.67 SS G_CDS: -0.69 Total: -29.35 kcal
Atomic # 14 Polarization: 26.33 SS G_CDS: -4.39 Total: 21.94 kcal
Total LS contribution 4.00 Total: 4.00 kcal
Total: -34.45 -5.67 -40.12 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000044414905.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.038 kcal
(2) G-P(sol) polarization free energy of solvation -34.452 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.491 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.670 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.161 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds