Wall clock time and date at job start Mon Mar 30 2020 02:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86802 * 120.00186 * 2 1 4 4 H 1.48496 * 109.47389 * 264.60419 * 3 2 1 5 5 H 1.48502 * 109.46925 * 24.60898 * 3 2 1 6 6 H 1.48505 * 109.47093 * 144.60230 * 3 2 1 7 7 C 1.40049 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99977 * 351.73818 * 7 2 1 9 9 C 1.46376 * 120.00384 * 171.73941 * 7 2 1 10 10 O 1.21689 * 119.99559 * 339.40675 * 9 7 2 11 11 N 1.34774 * 120.00361 * 159.41295 * 9 7 2 12 12 C 1.46500 * 120.00280 * 175.12415 * 11 9 7 13 13 C 1.52993 * 109.47155 * 275.08879 * 12 11 9 14 14 O 1.42902 * 109.47458 * 65.41110 * 13 12 11 15 15 C 1.46503 * 119.99702 * 355.12085 * 11 9 7 16 16 C 1.54262 * 110.03156 * 231.54377 * 15 11 9 17 17 C 1.54973 * 104.15867 * 217.13631 * 16 15 11 18 18 C 1.54891 * 102.77522 * 37.89010 * 17 16 15 19 19 C 1.53879 * 110.02995 * 114.32544 * 15 11 9 20 20 H 0.97007 * 119.99751 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46836 * 35.08496 * 12 11 9 22 22 H 1.08995 * 109.46768 * 155.08450 * 12 11 9 23 23 H 1.09000 * 109.47304 * 185.41539 * 13 12 11 24 24 H 1.09009 * 109.47201 * 305.41239 * 13 12 11 25 25 H 0.96698 * 114.00352 * 180.02562 * 14 13 12 26 26 H 1.08997 * 110.01645 * 352.93737 * 15 11 9 27 27 H 1.08998 * 110.48821 * 335.78065 * 16 15 11 28 28 H 1.08994 * 110.48961 * 98.43110 * 16 15 11 29 29 H 1.08989 * 110.72095 * 279.57416 * 17 16 15 30 30 H 1.09000 * 110.92115 * 156.29157 * 17 16 15 31 31 H 1.09000 * 110.48493 * 203.40030 * 18 17 16 32 32 H 1.09005 * 110.60102 * 80.81821 * 18 17 16 33 33 H 1.09000 * 110.03529 * 238.56823 * 19 15 11 34 34 H 1.08999 * 110.03238 * 0.02562 * 19 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.6023 1.9806 -1.3938 5 1 1.3859 2.6829 0.5830 6 1 3.4766 1.4757 0.8110 7 6 2.0069 -1.2128 -0.0005 8 1 1.4754 -2.1433 0.1334 9 6 3.4593 -1.2194 -0.1827 10 8 4.0124 -0.2646 -0.6957 11 7 4.1839 -2.2829 0.2176 12 6 5.6213 -2.3366 -0.0604 13 6 5.8482 -2.8942 -1.4669 14 8 5.3187 -1.9828 -2.4319 15 6 3.5342 -3.3854 0.9309 16 6 4.3007 -3.6970 2.2328 17 6 4.2248 -5.2399 2.3574 18 6 4.3706 -5.7097 0.8886 19 6 3.5781 -4.6645 0.0766 20 1 -0.4850 0.8401 0.0004 21 1 6.0416 -1.3330 0.0047 22 1 6.1086 -2.9828 0.6697 23 1 6.9168 -3.0244 -1.6382 24 1 5.3451 -3.8566 -1.5618 25 1 5.4273 -2.2728 -3.3479 26 1 2.5009 -3.1243 1.1594 27 1 5.3379 -3.3717 2.1521 28 1 3.8156 -3.2205 3.0846 29 1 3.2627 -5.5468 2.7673 30 1 5.0428 -5.6218 2.9681 31 1 3.9368 -6.7013 0.7604 32 1 5.4186 -5.7112 0.5887 33 1 2.5662 -5.0247 -0.1088 34 1 4.0833 -4.4651 -0.8684 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044414905.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:41 Heat of formation + Delta-G solvation = -121.001793 kcal Electronic energy + Delta-G solvation = -16880.564884 eV Core-core repulsion = 14197.915551 eV Total energy + Delta-G solvation = -2682.649333 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71734 -38.41604 -37.53078 -35.00063 -34.65327 -30.98335 -29.60601 -28.50699 -27.73222 -23.88641 -21.77029 -21.33458 -20.54864 -18.94923 -18.27009 -17.82772 -16.91330 -16.34412 -15.89157 -15.84268 -15.15235 -14.71900 -14.54388 -14.26049 -14.07932 -13.76410 -13.14721 -13.03127 -12.69594 -12.46960 -12.36951 -12.07262 -11.87230 -11.85083 -11.79210 -11.35492 -11.28285 -11.15588 -10.60560 -9.87625 -9.16379 -8.75320 -6.92795 1.31074 1.33813 1.56028 2.17343 2.32849 2.69682 3.35263 3.54438 3.81530 3.86411 4.08457 4.25037 4.37173 4.49638 4.52942 4.62492 4.69890 4.71533 4.81771 4.83642 4.94431 5.13036 5.18155 5.21072 5.29593 5.42196 5.51167 5.55547 5.76391 6.10326 6.32780 6.69375 7.05327 7.26010 8.14232 8.32561 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.010921 C = 0.008926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.099516 B = 2563.341811 C = 3136.166870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.070 3.930 3 Si 1.007 2.993 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.289 1.289 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.560 3.440 10 O -0.627 6.627 11 N -0.618 5.618 12 C 0.114 3.886 13 C 0.056 3.944 14 O -0.582 6.582 15 C 0.133 3.867 16 C -0.134 4.134 17 C -0.113 4.113 18 C -0.112 4.112 19 C -0.142 4.142 20 H 0.289 0.711 21 H 0.046 0.954 22 H 0.117 0.883 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.380 0.620 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.492 -12.510 2.797 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.144 4.144 3 Si 0.840 3.160 4 H -0.223 1.223 5 H -0.225 1.225 6 H -0.216 1.216 7 C -0.590 4.590 8 H 0.094 0.906 9 C 0.365 3.635 10 O -0.519 6.519 11 N -0.350 5.350 12 C -0.009 4.009 13 C -0.022 4.022 14 O -0.388 6.388 15 C 0.029 3.971 16 C -0.172 4.172 17 C -0.151 4.151 18 C -0.149 4.149 19 C -0.181 4.181 20 H 0.099 0.901 21 H 0.065 0.935 22 H 0.134 0.866 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.227 0.773 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.420 -11.663 3.097 15.944 hybrid contribution -0.055 0.615 -0.750 0.972 sum 10.366 -11.047 2.347 15.330 Atomic orbital electron populations 1.69571 1.08162 1.30675 1.40646 1.26161 0.95253 1.03449 0.89565 0.84703 0.76334 0.76857 0.78127 1.22256 1.22461 1.21601 1.20963 0.90448 0.95176 1.52433 0.90630 1.18159 0.87768 0.80967 0.76564 1.90219 1.73716 1.36879 1.51084 1.47528 1.07592 1.20497 1.59355 1.21444 0.82561 1.01326 0.95602 1.22945 0.97826 0.92146 0.89313 1.86868 1.83981 1.48882 1.19090 1.21855 0.97370 0.86055 0.91812 1.22787 1.00597 0.97831 0.96003 1.22440 1.02703 0.92977 0.96947 1.22309 1.00329 0.97828 0.94464 1.22735 1.00825 0.95081 0.99423 0.90095 0.93504 0.86569 0.90942 0.92316 0.77275 0.91080 0.90521 0.92201 0.91289 0.89278 0.90296 0.90477 0.92514 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.92 13.92 21.84 0.30 -50.62 16 2 C 0.07 4.18 5.52 85.31 0.47 4.65 16 3 Si 1.01 55.31 25.85 68.60 1.77 57.08 16 4 H -0.30 -16.98 7.11 99.48 0.71 -16.28 16 5 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 6 H -0.29 -16.68 6.83 99.48 0.68 -16.00 16 7 C -0.55 -33.07 8.99 24.83 0.22 -32.85 16 8 H 0.08 4.57 6.49 -2.91 -0.02 4.55 16 9 C 0.56 31.37 6.64 86.36 0.57 31.94 16 10 O -0.63 -38.59 11.42 8.69 0.10 -38.49 16 11 N -0.62 -26.89 2.38 -798.88 -1.90 -28.80 16 12 C 0.11 4.04 5.40 86.38 0.47 4.50 16 13 C 0.06 1.72 7.20 71.98 0.52 2.23 16 14 O -0.58 -22.73 12.09 -135.97 -1.64 -24.37 16 15 C 0.13 4.83 3.12 45.72 0.14 4.98 16 16 C -0.13 -3.71 6.34 31.70 0.20 -3.51 16 17 C -0.11 -2.28 6.91 31.92 0.22 -2.06 16 18 C -0.11 -2.25 6.83 31.67 0.22 -2.04 16 19 C -0.14 -4.17 6.35 31.32 0.20 -3.98 16 20 H 0.29 15.67 8.29 -92.70 -0.77 14.90 16 21 H 0.05 1.95 7.51 -2.39 -0.02 1.93 16 22 H 0.12 3.09 5.94 -2.39 -0.01 3.08 16 23 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 1.64 5.26 -2.38 -0.01 1.62 16 25 H 0.38 10.58 9.12 -74.06 -0.68 9.90 16 26 H 0.07 3.10 5.60 -2.39 -0.01 3.08 16 27 H 0.08 1.98 5.80 -2.39 -0.01 1.97 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 2.05 4.69 -2.39 -0.01 2.04 16 Total: -1.00 -76.29 265.70 2.27 -74.02 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.41 Total: 7.30 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 3.23 Total: 3.88 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -1.60 Total: -79.41 kcal Atomic # 8 Polarization: -61.32 SS G_CDS: -1.54 Total: -62.87 kcal Atomic # 14 Polarization: 55.31 SS G_CDS: 1.77 Total: 57.08 kcal Total: -76.29 2.27 -74.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044414905.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.979 kcal (2) G-P(sol) polarization free energy of solvation -76.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds