Wall clock time and date at job start Mon Mar 30 2020 02:58:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30668 * 1
3 3 Si 1.86802 * 120.00186 * 2 1
4 4 H 1.48496 * 109.47389 * 264.60419 * 3 2 1
5 5 H 1.48502 * 109.46925 * 24.60898 * 3 2 1
6 6 H 1.48505 * 109.47093 * 144.60230 * 3 2 1
7 7 C 1.40049 * 120.00084 * 180.02562 * 2 1 3
8 8 H 1.07997 * 119.99977 * 351.73818 * 7 2 1
9 9 C 1.46376 * 120.00384 * 171.73941 * 7 2 1
10 10 O 1.21689 * 119.99559 * 339.40675 * 9 7 2
11 11 N 1.34774 * 120.00361 * 159.41295 * 9 7 2
12 12 C 1.46500 * 120.00280 * 175.12415 * 11 9 7
13 13 C 1.52993 * 109.47155 * 275.08879 * 12 11 9
14 14 O 1.42902 * 109.47458 * 65.41110 * 13 12 11
15 15 C 1.46503 * 119.99702 * 355.12085 * 11 9 7
16 16 C 1.54262 * 110.03156 * 231.54377 * 15 11 9
17 17 C 1.54973 * 104.15867 * 217.13631 * 16 15 11
18 18 C 1.54891 * 102.77522 * 37.89010 * 17 16 15
19 19 C 1.53879 * 110.02995 * 114.32544 * 15 11 9
20 20 H 0.97007 * 119.99751 * 359.97438 * 1 2 3
21 21 H 1.08997 * 109.46836 * 35.08496 * 12 11 9
22 22 H 1.08995 * 109.46768 * 155.08450 * 12 11 9
23 23 H 1.09000 * 109.47304 * 185.41539 * 13 12 11
24 24 H 1.09009 * 109.47201 * 305.41239 * 13 12 11
25 25 H 0.96698 * 114.00352 * 180.02562 * 14 13 12
26 26 H 1.08997 * 110.01645 * 352.93737 * 15 11 9
27 27 H 1.08998 * 110.48821 * 335.78065 * 16 15 11
28 28 H 1.08994 * 110.48961 * 98.43110 * 16 15 11
29 29 H 1.08989 * 110.72095 * 279.57416 * 17 16 15
30 30 H 1.09000 * 110.92115 * 156.29157 * 17 16 15
31 31 H 1.09000 * 110.48493 * 203.40030 * 18 17 16
32 32 H 1.09005 * 110.60102 * 80.81821 * 18 17 16
33 33 H 1.09000 * 110.03529 * 238.56823 * 19 15 11
34 34 H 1.08999 * 110.03238 * 0.02562 * 19 15 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2407 1.6177 0.0000
4 1 2.6023 1.9806 -1.3938
5 1 1.3859 2.6829 0.5830
6 1 3.4766 1.4757 0.8110
7 6 2.0069 -1.2128 -0.0005
8 1 1.4754 -2.1433 0.1334
9 6 3.4593 -1.2194 -0.1827
10 8 4.0124 -0.2646 -0.6957
11 7 4.1839 -2.2829 0.2176
12 6 5.6213 -2.3366 -0.0604
13 6 5.8482 -2.8942 -1.4669
14 8 5.3187 -1.9828 -2.4319
15 6 3.5342 -3.3854 0.9309
16 6 4.3007 -3.6970 2.2328
17 6 4.2248 -5.2399 2.3574
18 6 4.3706 -5.7097 0.8886
19 6 3.5781 -4.6645 0.0766
20 1 -0.4850 0.8401 0.0004
21 1 6.0416 -1.3330 0.0047
22 1 6.1086 -2.9828 0.6697
23 1 6.9168 -3.0244 -1.6382
24 1 5.3451 -3.8566 -1.5618
25 1 5.4273 -2.2728 -3.3479
26 1 2.5009 -3.1243 1.1594
27 1 5.3379 -3.3717 2.1521
28 1 3.8156 -3.2205 3.0846
29 1 3.2627 -5.5468 2.7673
30 1 5.0428 -5.6218 2.9681
31 1 3.9368 -6.7013 0.7604
32 1 5.4186 -5.7112 0.5887
33 1 2.5662 -5.0247 -0.1088
34 1 4.0833 -4.4651 -0.8684
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000044414905.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:41
Heat of formation + Delta-G solvation = -121.001793 kcal
Electronic energy + Delta-G solvation = -16880.564884 eV
Core-core repulsion = 14197.915551 eV
Total energy + Delta-G solvation = -2682.649333 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.71734 -38.41604 -37.53078 -35.00063 -34.65327 -30.98335 -29.60601 -28.50699
-27.73222 -23.88641 -21.77029 -21.33458 -20.54864 -18.94923 -18.27009 -17.82772
-16.91330 -16.34412 -15.89157 -15.84268 -15.15235 -14.71900 -14.54388 -14.26049
-14.07932 -13.76410 -13.14721 -13.03127 -12.69594 -12.46960 -12.36951 -12.07262
-11.87230 -11.85083 -11.79210 -11.35492 -11.28285 -11.15588 -10.60560 -9.87625
-9.16379 -8.75320 -6.92795 1.31074 1.33813 1.56028 2.17343 2.32849
2.69682 3.35263 3.54438 3.81530 3.86411 4.08457 4.25037 4.37173
4.49638 4.52942 4.62492 4.69890 4.71533 4.81771 4.83642 4.94431
5.13036 5.18155 5.21072 5.29593 5.42196 5.51167 5.55547 5.76391
6.10326 6.32780 6.69375 7.05327 7.26010 8.14232 8.32561
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.026888 B = 0.010921 C = 0.008926
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1041.099516 B = 2563.341811 C = 3136.166870
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.859 5.859
2 C 0.070 3.930
3 Si 1.007 2.993
4 H -0.295 1.295
5 H -0.295 1.295
6 H -0.289 1.289
7 C -0.554 4.554
8 H 0.076 0.924
9 C 0.560 3.440
10 O -0.627 6.627
11 N -0.618 5.618
12 C 0.114 3.886
13 C 0.056 3.944
14 O -0.582 6.582
15 C 0.133 3.867
16 C -0.134 4.134
17 C -0.113 4.113
18 C -0.112 4.112
19 C -0.142 4.142
20 H 0.289 0.711
21 H 0.046 0.954
22 H 0.117 0.883
23 H 0.073 0.927
24 H 0.059 0.941
25 H 0.380 0.620
26 H 0.071 0.929
27 H 0.076 0.924
28 H 0.059 0.941
29 H 0.068 0.932
30 H 0.089 0.911
31 H 0.078 0.922
32 H 0.077 0.923
33 H 0.056 0.944
34 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.492 -12.510 2.797 16.565
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.491 5.491
2 C -0.144 4.144
3 Si 0.840 3.160
4 H -0.223 1.223
5 H -0.225 1.225
6 H -0.216 1.216
7 C -0.590 4.590
8 H 0.094 0.906
9 C 0.365 3.635
10 O -0.519 6.519
11 N -0.350 5.350
12 C -0.009 4.009
13 C -0.022 4.022
14 O -0.388 6.388
15 C 0.029 3.971
16 C -0.172 4.172
17 C -0.151 4.151
18 C -0.149 4.149
19 C -0.181 4.181
20 H 0.099 0.901
21 H 0.065 0.935
22 H 0.134 0.866
23 H 0.091 0.909
24 H 0.077 0.923
25 H 0.227 0.773
26 H 0.089 0.911
27 H 0.095 0.905
28 H 0.078 0.922
29 H 0.087 0.913
30 H 0.107 0.893
31 H 0.097 0.903
32 H 0.095 0.905
33 H 0.075 0.925
34 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 10.420 -11.663 3.097 15.944
hybrid contribution -0.055 0.615 -0.750 0.972
sum 10.366 -11.047 2.347 15.330
Atomic orbital electron populations
1.69571 1.08162 1.30675 1.40646 1.26161 0.95253 1.03449 0.89565
0.84703 0.76334 0.76857 0.78127 1.22256 1.22461 1.21601 1.20963
0.90448 0.95176 1.52433 0.90630 1.18159 0.87768 0.80967 0.76564
1.90219 1.73716 1.36879 1.51084 1.47528 1.07592 1.20497 1.59355
1.21444 0.82561 1.01326 0.95602 1.22945 0.97826 0.92146 0.89313
1.86868 1.83981 1.48882 1.19090 1.21855 0.97370 0.86055 0.91812
1.22787 1.00597 0.97831 0.96003 1.22440 1.02703 0.92977 0.96947
1.22309 1.00329 0.97828 0.94464 1.22735 1.00825 0.95081 0.99423
0.90095 0.93504 0.86569 0.90942 0.92316 0.77275 0.91080 0.90521
0.92201 0.91289 0.89278 0.90296 0.90477 0.92514 0.91486
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -50.92 13.92 21.84 0.30 -50.62 16
2 C 0.07 4.18 5.52 85.31 0.47 4.65 16
3 Si 1.01 55.31 25.85 68.60 1.77 57.08 16
4 H -0.30 -16.98 7.11 99.48 0.71 -16.28 16
5 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16
6 H -0.29 -16.68 6.83 99.48 0.68 -16.00 16
7 C -0.55 -33.07 8.99 24.83 0.22 -32.85 16
8 H 0.08 4.57 6.49 -2.91 -0.02 4.55 16
9 C 0.56 31.37 6.64 86.36 0.57 31.94 16
10 O -0.63 -38.59 11.42 8.69 0.10 -38.49 16
11 N -0.62 -26.89 2.38 -798.88 -1.90 -28.80 16
12 C 0.11 4.04 5.40 86.38 0.47 4.50 16
13 C 0.06 1.72 7.20 71.98 0.52 2.23 16
14 O -0.58 -22.73 12.09 -135.97 -1.64 -24.37 16
15 C 0.13 4.83 3.12 45.72 0.14 4.98 16
16 C -0.13 -3.71 6.34 31.70 0.20 -3.51 16
17 C -0.11 -2.28 6.91 31.92 0.22 -2.06 16
18 C -0.11 -2.25 6.83 31.67 0.22 -2.04 16
19 C -0.14 -4.17 6.35 31.32 0.20 -3.98 16
20 H 0.29 15.67 8.29 -92.70 -0.77 14.90 16
21 H 0.05 1.95 7.51 -2.39 -0.02 1.93 16
22 H 0.12 3.09 5.94 -2.39 -0.01 3.08 16
23 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16
24 H 0.06 1.64 5.26 -2.38 -0.01 1.62 16
25 H 0.38 10.58 9.12 -74.06 -0.68 9.90 16
26 H 0.07 3.10 5.60 -2.39 -0.01 3.08 16
27 H 0.08 1.98 5.80 -2.39 -0.01 1.97 16
28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16
29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
32 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16
33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16
34 H 0.07 2.05 4.69 -2.39 -0.01 2.04 16
Total: -1.00 -76.29 265.70 2.27 -74.02
By element:
Atomic # 1 Polarization: 6.89 SS G_CDS: 0.41 Total: 7.30 kcal
Atomic # 6 Polarization: 0.65 SS G_CDS: 3.23 Total: 3.88 kcal
Atomic # 7 Polarization: -77.81 SS G_CDS: -1.60 Total: -79.41 kcal
Atomic # 8 Polarization: -61.32 SS G_CDS: -1.54 Total: -62.87 kcal
Atomic # 14 Polarization: 55.31 SS G_CDS: 1.77 Total: 57.08 kcal
Total: -76.29 2.27 -74.02 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000044414905.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.979 kcal
(2) G-P(sol) polarization free energy of solvation -76.294 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.273 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.023 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.002 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds