Wall clock time and date at job start Mon Mar 30 2020 03:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00326 * 2 1 4 4 H 1.48499 * 109.47552 * 239.99808 * 3 2 1 5 5 H 1.48500 * 109.47225 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46825 * 119.99873 * 3 2 1 7 7 C 1.38816 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00296 * 168.13364 * 7 2 1 9 9 N 1.36944 * 119.99532 * 348.13911 * 7 2 1 10 10 C 1.46923 * 120.63357 * 328.92965 * 9 7 2 11 11 C 1.53194 * 108.77731 * 233.63341 * 10 9 7 12 12 C 1.53040 * 109.30908 * 305.36416 * 11 10 9 13 13 C 1.53038 * 109.53779 * 61.36570 * 12 11 10 14 14 C 1.46923 * 120.62768 * 148.95408 * 9 7 2 15 15 H 1.09002 * 109.70808 * 246.22571 * 14 9 7 16 16 C 1.53002 * 109.59039 * 6.57866 * 14 9 7 17 17 C 1.53001 * 109.47267 * 291.93030 * 16 14 9 18 18 C 1.50696 * 109.47203 * 176.13485 * 17 16 14 19 19 O 1.20829 * 120.00090 * 359.97438 * 18 17 16 20 20 O 1.34231 * 120.00016 * 179.97438 * 18 17 16 21 21 H 0.96998 * 119.99349 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.58893 * 113.84073 * 10 9 7 23 23 H 1.09005 * 109.69933 * 353.49115 * 10 9 7 24 24 H 1.08990 * 109.49596 * 185.41233 * 11 10 9 25 25 H 1.09007 * 109.52098 * 65.32970 * 11 10 9 26 26 H 1.08994 * 109.45934 * 301.33965 * 12 11 10 27 27 H 1.09007 * 109.44671 * 181.37897 * 12 11 10 28 28 H 1.09003 * 109.49635 * 178.68007 * 13 12 11 29 29 H 1.08997 * 109.49961 * 58.58884 * 13 12 11 30 30 H 1.08998 * 109.47355 * 171.92419 * 16 14 9 31 31 H 1.09004 * 109.46551 * 51.92794 * 16 14 9 32 32 H 1.09003 * 109.47127 * 56.13019 * 17 16 14 33 33 H 1.09004 * 109.46748 * 296.13321 * 17 16 14 34 34 H 0.96701 * 117.00050 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2854 2.7465 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0730 -1.2121 -0.1929 9 7 1.3474 -2.3755 0.2427 10 6 0.1734 -2.4030 1.1257 11 6 0.3970 -3.4613 2.2105 12 6 0.7178 -4.8038 1.5494 13 6 2.0024 -4.6756 0.7276 14 6 1.7970 -3.6310 -0.3740 15 1 1.0437 -3.9853 -1.0777 16 6 3.1171 -3.3965 -1.1111 17 6 2.8715 -2.4953 -2.3229 18 6 4.1851 -2.1870 -2.9940 19 8 5.2124 -2.6410 -2.5485 20 8 4.2139 -1.4079 -4.0867 21 1 -0.4849 0.8401 0.0004 22 1 -0.7142 -2.6559 0.5459 23 1 0.0402 -1.4260 1.5903 24 1 -0.5050 -3.5595 2.8144 25 1 1.2297 -3.1608 2.8465 26 1 -0.1048 -5.0919 0.8950 27 1 0.8532 -5.5640 2.3187 28 1 2.2429 -5.6380 0.2760 29 1 2.8202 -4.3634 1.3770 30 1 3.5216 -4.3520 -1.4448 31 1 3.8280 -2.9159 -0.4389 32 1 2.4035 -1.5667 -1.9962 33 1 2.2144 -3.0051 -3.0275 34 1 5.0799 -1.2379 -4.4820 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050924946.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:28 Heat of formation + Delta-G solvation = -88.363654 kcal Electronic energy + Delta-G solvation = -16711.065622 eV Core-core repulsion = 14029.831585 eV Total energy + Delta-G solvation = -2681.234037 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.78224 -37.86541 -35.71973 -33.46311 -32.88058 -29.92105 -29.18635 -25.65805 -24.20116 -22.04783 -21.07552 -19.77985 -19.06250 -17.64066 -16.56999 -15.99012 -15.54104 -14.97315 -14.02040 -13.87168 -13.42471 -12.99663 -12.75196 -12.67526 -12.23946 -12.10919 -11.25246 -11.16632 -11.10199 -10.84021 -10.70937 -10.44558 -10.31293 -10.21946 -10.04540 -9.96667 -9.93416 -9.39539 -9.25147 -8.42969 -6.59016 -5.81979 -3.27705 2.72800 3.35198 3.41149 3.43296 3.60016 4.44301 5.28969 5.34598 5.56681 5.59305 5.73467 5.77451 5.86484 5.98608 6.26429 6.29559 6.37306 6.42682 6.47031 6.62138 6.74002 6.82382 6.83675 6.87117 6.93644 7.08355 7.19904 7.45156 7.71811 7.76771 8.36732 8.44277 9.19090 9.82433 10.41819 11.24293 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.017792 B = 0.013743 C = 0.008473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.361520 B = 2036.911393 C = 3303.684417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.007 3.993 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.144 4.144 12 C -0.109 4.109 13 C -0.129 4.129 14 C 0.173 3.827 15 H 0.027 0.973 16 C -0.091 4.091 17 C -0.128 4.128 18 C 0.480 3.520 19 O -0.533 6.533 20 O -0.521 6.521 21 H 0.255 0.745 22 H 0.017 0.983 23 H 0.086 0.914 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.090 0.910 34 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.880 -5.519 -2.532 6.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.192 4.192 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.183 4.183 12 C -0.146 4.146 13 C -0.169 4.169 14 C 0.067 3.933 15 H 0.045 0.955 16 C -0.128 4.128 17 C -0.164 4.164 18 C 0.324 3.676 19 O -0.422 6.422 20 O -0.332 6.332 21 H 0.066 0.934 22 H 0.035 0.965 23 H 0.104 0.896 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.171 0.829 33 H 0.108 0.892 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 2.644 -5.564 -2.245 6.556 hybrid contribution 1.023 0.992 -0.247 1.446 sum 3.667 -4.572 -2.492 6.369 Atomic orbital electron populations 1.69974 1.05189 1.25656 1.53261 1.25132 0.95322 0.98161 1.00606 0.86491 0.79061 0.83683 0.78358 1.20693 1.21479 1.20923 1.19066 0.91383 0.84009 1.43748 0.91462 1.44038 1.33030 1.02678 1.51460 1.20768 0.88161 0.97249 0.89151 1.22199 0.99707 0.96779 0.99647 1.21382 0.97642 0.97278 0.98318 1.22014 0.97671 0.98364 0.98817 1.20452 0.93192 0.87837 0.91858 0.95514 1.21372 0.98432 0.97604 0.95435 1.21966 0.90793 1.06929 0.96743 1.24204 0.93016 0.73481 0.76871 1.90642 1.36674 1.51085 1.63815 1.84630 1.39933 1.65562 1.43054 0.93450 0.96481 0.89597 0.93659 0.92928 0.92965 0.93979 0.93360 0.92354 0.92841 0.90760 0.82880 0.89185 0.74458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 11.10 55.49 0.62 -24.17 16 2 C 0.01 0.20 5.02 -17.43 -0.09 0.11 16 3 Si 0.89 21.08 29.57 -169.99 -5.03 16.05 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.42 6.33 -15.05 -0.10 -6.52 16 8 H 0.07 1.71 5.62 -52.49 -0.30 1.42 16 9 N -0.59 -13.90 2.99 -164.77 -0.49 -14.39 16 10 C 0.17 4.00 5.26 -3.71 -0.02 3.98 16 11 C -0.14 -2.77 6.08 -26.61 -0.16 -2.93 16 12 C -0.11 -1.87 5.88 -26.69 -0.16 -2.02 16 13 C -0.13 -2.30 5.37 -26.61 -0.14 -2.44 16 14 C 0.17 3.48 2.90 -67.60 -0.20 3.29 16 15 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 16 C -0.09 -1.73 3.53 -26.73 -0.09 -1.82 16 17 C -0.13 -2.40 5.28 -27.88 -0.15 -2.54 16 18 C 0.48 8.68 8.33 36.00 0.30 8.98 16 19 O -0.53 -10.71 16.70 -18.75 -0.31 -11.03 16 20 O -0.52 -7.95 13.42 -39.26 -0.53 -8.48 16 21 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 22 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.09 2.23 6.12 -51.93 -0.32 1.92 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 32 H 0.15 3.38 5.11 -51.93 -0.27 3.11 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.40 4.10 9.10 45.56 0.41 4.51 16 LS Contribution 271.52 15.07 4.09 4.09 Total: -1.00 -29.05 271.52 -6.63 -35.68 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.18 Total: 4.16 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -0.80 Total: -1.92 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.12 Total: -38.55 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.84 Total: -19.50 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.05 -6.63 -35.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050924946.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.685 kcal (2) G-P(sol) polarization free energy of solvation -29.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds