Wall clock time and date at job start Mon Mar 30 2020 03:13:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86800 * 120.00326 * 2 1
4 4 H 1.48499 * 109.47552 * 239.99808 * 3 2 1
5 5 H 1.48500 * 109.47225 * 0.02562 * 3 2 1
6 6 H 1.48503 * 109.46825 * 119.99873 * 3 2 1
7 7 C 1.38816 * 120.00006 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00296 * 168.13364 * 7 2 1
9 9 N 1.36944 * 119.99532 * 348.13911 * 7 2 1
10 10 C 1.46923 * 120.63357 * 328.92965 * 9 7 2
11 11 C 1.53194 * 108.77731 * 233.63341 * 10 9 7
12 12 C 1.53040 * 109.30908 * 305.36416 * 11 10 9
13 13 C 1.53038 * 109.53779 * 61.36570 * 12 11 10
14 14 C 1.46923 * 120.62768 * 148.95408 * 9 7 2
15 15 H 1.09002 * 109.70808 * 246.22571 * 14 9 7
16 16 C 1.53002 * 109.59039 * 6.57866 * 14 9 7
17 17 C 1.53001 * 109.47267 * 291.93030 * 16 14 9
18 18 C 1.50696 * 109.47203 * 176.13485 * 17 16 14
19 19 O 1.20829 * 120.00090 * 359.97438 * 18 17 16
20 20 O 1.34231 * 120.00016 * 179.97438 * 18 17 16
21 21 H 0.96998 * 119.99349 * 359.97438 * 1 2 3
22 22 H 1.08999 * 109.58893 * 113.84073 * 10 9 7
23 23 H 1.09005 * 109.69933 * 353.49115 * 10 9 7
24 24 H 1.08990 * 109.49596 * 185.41233 * 11 10 9
25 25 H 1.09007 * 109.52098 * 65.32970 * 11 10 9
26 26 H 1.08994 * 109.45934 * 301.33965 * 12 11 10
27 27 H 1.09007 * 109.44671 * 181.37897 * 12 11 10
28 28 H 1.09003 * 109.49635 * 178.68007 * 13 12 11
29 29 H 1.08997 * 109.49961 * 58.58884 * 13 12 11
30 30 H 1.08998 * 109.47355 * 171.92419 * 16 14 9
31 31 H 1.09004 * 109.46551 * 51.92794 * 16 14 9
32 32 H 1.09003 * 109.47127 * 56.13019 * 17 16 14
33 33 H 1.09004 * 109.46748 * 296.13321 * 17 16 14
34 34 H 0.96701 * 117.00050 * 179.97438 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.1041 1.6964 -1.2124
5 1 1.2854 2.7465 0.0006
6 1 3.1040 1.6962 1.2126
7 6 2.0103 -1.2022 -0.0005
8 1 3.0730 -1.2121 -0.1929
9 7 1.3474 -2.3755 0.2427
10 6 0.1734 -2.4030 1.1257
11 6 0.3970 -3.4613 2.2105
12 6 0.7178 -4.8038 1.5494
13 6 2.0024 -4.6756 0.7276
14 6 1.7970 -3.6310 -0.3740
15 1 1.0437 -3.9853 -1.0777
16 6 3.1171 -3.3965 -1.1111
17 6 2.8715 -2.4953 -2.3229
18 6 4.1851 -2.1870 -2.9940
19 8 5.2124 -2.6410 -2.5485
20 8 4.2139 -1.4079 -4.0867
21 1 -0.4849 0.8401 0.0004
22 1 -0.7142 -2.6559 0.5459
23 1 0.0402 -1.4260 1.5903
24 1 -0.5050 -3.5595 2.8144
25 1 1.2297 -3.1608 2.8465
26 1 -0.1048 -5.0919 0.8950
27 1 0.8532 -5.5640 2.3187
28 1 2.2429 -5.6380 0.2760
29 1 2.8202 -4.3634 1.3770
30 1 3.5216 -4.3520 -1.4448
31 1 3.8280 -2.9159 -0.4389
32 1 2.4035 -1.5667 -1.9962
33 1 2.2144 -3.0051 -3.0275
34 1 5.0799 -1.2379 -4.4820
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000050924946.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:28
Heat of formation + Delta-G solvation = -88.363654 kcal
Electronic energy + Delta-G solvation = -16711.065622 eV
Core-core repulsion = 14029.831585 eV
Total energy + Delta-G solvation = -2681.234037 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.78224 -37.86541 -35.71973 -33.46311 -32.88058 -29.92105 -29.18635 -25.65805
-24.20116 -22.04783 -21.07552 -19.77985 -19.06250 -17.64066 -16.56999 -15.99012
-15.54104 -14.97315 -14.02040 -13.87168 -13.42471 -12.99663 -12.75196 -12.67526
-12.23946 -12.10919 -11.25246 -11.16632 -11.10199 -10.84021 -10.70937 -10.44558
-10.31293 -10.21946 -10.04540 -9.96667 -9.93416 -9.39539 -9.25147 -8.42969
-6.59016 -5.81979 -3.27705 2.72800 3.35198 3.41149 3.43296 3.60016
4.44301 5.28969 5.34598 5.56681 5.59305 5.73467 5.77451 5.86484
5.98608 6.26429 6.29559 6.37306 6.42682 6.47031 6.62138 6.74002
6.82382 6.83675 6.87117 6.93644 7.08355 7.19904 7.45156 7.71811
7.76771 8.36732 8.44277 9.19090 9.82433 10.41819 11.24293
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.017792 B = 0.013743 C = 0.008473
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1573.361520 B = 2036.911393 C = 3303.684417
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.007 3.993
3 Si 0.895 3.105
4 H -0.281 1.281
5 H -0.289 1.289
6 H -0.283 1.283
7 C -0.253 4.253
8 H 0.068 0.932
9 N -0.588 5.588
10 C 0.172 3.828
11 C -0.144 4.144
12 C -0.109 4.109
13 C -0.129 4.129
14 C 0.173 3.827
15 H 0.027 0.973
16 C -0.091 4.091
17 C -0.128 4.128
18 C 0.480 3.520
19 O -0.533 6.533
20 O -0.521 6.521
21 H 0.255 0.745
22 H 0.017 0.983
23 H 0.086 0.914
24 H 0.045 0.955
25 H 0.052 0.948
26 H 0.052 0.948
27 H 0.041 0.959
28 H 0.048 0.952
29 H 0.058 0.942
30 H 0.053 0.947
31 H 0.074 0.926
32 H 0.154 0.846
33 H 0.090 0.910
34 H 0.398 0.602
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.880 -5.519 -2.532 6.721
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.541 5.541
2 C -0.192 4.192
3 Si 0.724 3.276
4 H -0.207 1.207
5 H -0.215 1.215
6 H -0.209 1.209
7 C -0.382 4.382
8 H 0.085 0.915
9 N -0.312 5.312
10 C 0.047 3.953
11 C -0.183 4.183
12 C -0.146 4.146
13 C -0.169 4.169
14 C 0.067 3.933
15 H 0.045 0.955
16 C -0.128 4.128
17 C -0.164 4.164
18 C 0.324 3.676
19 O -0.422 6.422
20 O -0.332 6.332
21 H 0.066 0.934
22 H 0.035 0.965
23 H 0.104 0.896
24 H 0.063 0.937
25 H 0.071 0.929
26 H 0.070 0.930
27 H 0.060 0.940
28 H 0.066 0.934
29 H 0.076 0.924
30 H 0.072 0.928
31 H 0.092 0.908
32 H 0.171 0.829
33 H 0.108 0.892
34 H 0.255 0.745
Dipole moment (debyes) X Y Z Total
from point charges 2.644 -5.564 -2.245 6.556
hybrid contribution 1.023 0.992 -0.247 1.446
sum 3.667 -4.572 -2.492 6.369
Atomic orbital electron populations
1.69974 1.05189 1.25656 1.53261 1.25132 0.95322 0.98161 1.00606
0.86491 0.79061 0.83683 0.78358 1.20693 1.21479 1.20923 1.19066
0.91383 0.84009 1.43748 0.91462 1.44038 1.33030 1.02678 1.51460
1.20768 0.88161 0.97249 0.89151 1.22199 0.99707 0.96779 0.99647
1.21382 0.97642 0.97278 0.98318 1.22014 0.97671 0.98364 0.98817
1.20452 0.93192 0.87837 0.91858 0.95514 1.21372 0.98432 0.97604
0.95435 1.21966 0.90793 1.06929 0.96743 1.24204 0.93016 0.73481
0.76871 1.90642 1.36674 1.51085 1.63815 1.84630 1.39933 1.65562
1.43054 0.93450 0.96481 0.89597 0.93659 0.92928 0.92965 0.93979
0.93360 0.92354 0.92841 0.90760 0.82880 0.89185 0.74458
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.78 11.10 55.49 0.62 -24.17 16
2 C 0.01 0.20 5.02 -17.43 -0.09 0.11 16
3 Si 0.89 21.08 29.57 -169.99 -5.03 16.05 16
4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
7 C -0.25 -6.42 6.33 -15.05 -0.10 -6.52 16
8 H 0.07 1.71 5.62 -52.49 -0.30 1.42 16
9 N -0.59 -13.90 2.99 -164.77 -0.49 -14.39 16
10 C 0.17 4.00 5.26 -3.71 -0.02 3.98 16
11 C -0.14 -2.77 6.08 -26.61 -0.16 -2.93 16
12 C -0.11 -1.87 5.88 -26.69 -0.16 -2.02 16
13 C -0.13 -2.30 5.37 -26.61 -0.14 -2.44 16
14 C 0.17 3.48 2.90 -67.60 -0.20 3.29 16
15 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
16 C -0.09 -1.73 3.53 -26.73 -0.09 -1.82 16
17 C -0.13 -2.40 5.28 -27.88 -0.15 -2.54 16
18 C 0.48 8.68 8.33 36.00 0.30 8.98 16
19 O -0.53 -10.71 16.70 -18.75 -0.31 -11.03 16
20 O -0.52 -7.95 13.42 -39.26 -0.53 -8.48 16
21 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16
22 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16
23 H 0.09 2.23 6.12 -51.93 -0.32 1.92 16
24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16
25 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16
26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
27 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16
28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
31 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16
32 H 0.15 3.38 5.11 -51.93 -0.27 3.11 16
33 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16
34 H 0.40 4.10 9.10 45.56 0.41 4.51 16
LS Contribution 271.52 15.07 4.09 4.09
Total: -1.00 -29.05 271.52 -6.63 -35.68
By element:
Atomic # 1 Polarization: 8.34 SS G_CDS: -4.18 Total: 4.16 kcal
Atomic # 6 Polarization: -1.12 SS G_CDS: -0.80 Total: -1.92 kcal
Atomic # 7 Polarization: -38.68 SS G_CDS: 0.12 Total: -38.55 kcal
Atomic # 8 Polarization: -18.66 SS G_CDS: -0.84 Total: -19.50 kcal
Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal
Total LS contribution 4.09 Total: 4.09 kcal
Total: -29.05 -6.63 -35.68 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000050924946.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.685 kcal
(2) G-P(sol) polarization free energy of solvation -29.049 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.734 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.679 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.364 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds