Wall clock time and date at job start Mon Mar 30 2020 03:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47211 * 2 1 4 4 C 1.52999 * 109.47211 * 179.97438 * 3 2 1 5 5 C 1.50699 * 110.88334 * 56.12238 * 4 3 2 6 6 O 1.20829 * 119.99930 * 123.88076 * 5 4 3 7 7 O 1.34231 * 120.00311 * 303.87999 * 5 4 3 8 8 C 1.55151 * 111.00407 * 180.02562 * 4 3 2 9 9 C 1.54334 * 102.94202 * 82.61492 * 8 4 3 10 10 N 1.47021 * 107.26657 * 22.19019 * 9 8 4 11 11 C 1.36934 * 125.64585 * 181.02201 * 10 9 8 12 12 H 1.07998 * 120.00457 * 170.02239 * 11 10 9 13 13 C 1.38820 * 120.00198 * 350.02375 * 11 10 9 14 14 N 1.31615 * 120.00145 * 164.74736 * 13 11 10 15 15 Si 1.86799 * 119.99690 * 344.75030 * 13 11 10 16 16 H 1.48498 * 109.47199 * 185.52925 * 15 13 11 17 17 H 1.48494 * 109.47352 * 305.53335 * 15 13 11 18 18 H 1.48507 * 109.46985 * 65.53260 * 15 13 11 19 19 C 1.47418 * 108.70678 * 1.28907 * 10 9 8 20 20 H 1.08993 * 109.47522 * 59.99537 * 1 2 3 21 21 H 1.09006 * 109.47267 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47003 * 299.99402 * 1 2 3 23 23 H 1.09007 * 109.47003 * 240.00598 * 2 1 3 24 24 H 1.09002 * 109.47357 * 120.00283 * 2 1 3 25 25 H 1.09007 * 109.46649 * 60.00381 * 3 2 1 26 26 H 1.08993 * 109.47256 * 300.00626 * 3 2 1 27 27 H 0.96697 * 117.00209 * 179.97438 * 7 5 4 28 28 H 1.08994 * 110.72285 * 324.25253 * 8 4 3 29 29 H 1.09003 * 110.72333 * 200.97542 * 8 4 3 30 30 H 1.08998 * 109.88043 * 262.77544 * 9 8 4 31 31 H 1.09000 * 110.00851 * 141.68277 * 9 8 4 32 32 H 0.97001 * 119.99609 * 354.98513 * 14 13 11 33 33 H 1.09005 * 110.36993 * 94.48023 * 19 10 9 34 34 H 1.08998 * 110.37037 * 216.80297 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.1077 0.6575 -1.1680 6 8 4.8684 1.1799 -1.9480 7 8 3.7416 -0.6221 -1.3424 8 6 4.1261 2.8909 0.0013 9 6 4.0689 3.2825 1.4931 10 7 4.0544 2.0353 2.2713 11 6 3.9869 1.9470 3.6362 12 1 3.8199 0.9900 4.1079 13 6 4.1332 3.0878 4.4136 14 7 3.7769 3.0709 5.6805 15 14 4.8355 4.6468 3.6615 16 1 5.0130 5.6714 4.7216 17 1 6.1493 4.3471 3.0377 18 1 3.9023 5.1613 2.6271 19 6 4.1311 0.8955 1.3395 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8900 25 1 1.6767 1.9563 0.8901 26 1 1.6766 1.9564 -0.8899 27 1 4.1122 -1.0845 -2.1065 28 1 3.4922 3.5477 -0.5943 29 1 5.1532 2.9099 -0.3632 30 1 3.1623 3.8540 1.6918 31 1 4.9453 3.8742 1.7572 32 1 3.3454 2.2858 6.0525 33 1 5.1656 0.5745 1.2170 34 1 3.5168 0.0698 1.6986 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062938080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:03 Heat of formation + Delta-G solvation = -68.759669 kcal Electronic energy + Delta-G solvation = -16801.150157 eV Core-core repulsion = 14120.766213 eV Total energy + Delta-G solvation = -2680.383944 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61042 -37.99215 -36.10122 -34.51683 -32.49603 -30.36616 -28.92712 -26.15354 -24.40723 -22.96417 -21.48822 -20.60284 -19.33341 -17.82917 -17.45781 -16.43443 -15.82993 -15.07426 -14.45660 -14.31205 -13.66697 -13.46273 -13.27437 -13.06205 -12.42083 -12.26266 -11.83787 -11.67482 -11.48957 -11.33785 -11.24926 -11.03061 -10.51236 -10.38407 -10.28311 -10.07655 -9.88565 -9.35631 -8.99613 -8.72069 -7.07959 -6.32763 -3.24710 2.33714 3.14293 3.41833 3.51064 3.72060 4.60859 4.64322 4.90160 4.97673 5.16209 5.32038 5.33911 5.43041 5.55496 5.68848 5.74049 5.85652 5.95429 6.05683 6.10942 6.19244 6.25118 6.30634 6.40957 6.48118 6.56754 6.62309 6.68555 6.73489 7.60834 8.01551 8.31152 9.01557 9.52142 10.18540 11.17975 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.030144 B = 0.009686 C = 0.008371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.666026 B = 2890.066781 C = 3344.176385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C -0.097 4.097 4 C -0.071 4.071 5 C 0.499 3.501 6 O -0.520 6.520 7 O -0.505 6.505 8 C -0.110 4.110 9 C 0.110 3.890 10 N -0.608 5.608 11 C -0.322 4.322 12 H 0.080 0.920 13 C -0.019 4.019 14 N -0.927 5.927 15 Si 1.067 2.933 16 H -0.301 1.301 17 H -0.298 1.298 18 H -0.285 1.285 19 C 0.155 3.845 20 H 0.048 0.952 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.398 0.602 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.033 0.967 32 H 0.262 0.738 33 H 0.025 0.975 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 -5.270 -14.223 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C -0.134 4.134 4 C -0.073 4.073 5 C 0.342 3.658 6 O -0.408 6.408 7 O -0.316 6.316 8 C -0.148 4.148 9 C -0.015 4.015 10 N -0.335 5.335 11 C -0.449 4.449 12 H 0.098 0.902 13 C -0.219 4.219 14 N -0.568 5.568 15 Si 0.901 3.099 16 H -0.229 1.229 17 H -0.226 1.226 18 H -0.212 1.212 19 C 0.029 3.971 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.099 0.901 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.256 0.744 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.142 -3.381 -13.617 14.378 hybrid contribution -0.051 -1.908 -0.926 2.121 sum -3.193 -5.289 -14.543 15.801 Atomic orbital electron populations 1.21751 0.96288 1.01143 1.01494 1.21843 0.95255 0.96398 1.03665 1.21485 0.90651 0.98142 1.03131 1.21902 0.97624 0.95395 0.92348 1.23409 0.77137 0.79797 0.85477 1.90670 1.34241 1.70522 1.45394 1.84745 1.68531 1.26685 1.51665 1.22646 1.01912 0.92696 0.97542 1.22054 0.99292 0.90803 0.89312 1.44777 1.87486 0.98992 1.02280 1.20157 1.48823 0.97157 0.78756 0.90224 1.25822 0.99948 1.00934 0.95196 1.70898 1.41172 1.31468 1.13240 0.83889 0.76348 0.76296 0.73333 1.22945 1.22643 1.21226 1.21552 0.97340 0.92090 0.86149 0.93305 0.93073 0.92723 0.90054 0.91399 0.89293 0.92149 0.74402 0.90514 0.90107 0.93128 0.94991 0.92812 0.95775 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.13 -1.80 5.16 -26.73 -0.14 -1.93 16 3 C -0.10 -1.45 4.29 -26.73 -0.11 -1.56 16 4 C -0.07 -1.18 0.62 -153.40 -0.10 -1.28 16 5 C 0.50 7.62 6.97 36.01 0.25 7.87 16 6 O -0.52 -9.09 16.47 -18.75 -0.31 -9.40 16 7 O -0.50 -5.87 10.16 -39.26 -0.40 -6.27 16 8 C -0.11 -1.96 5.58 -24.89 -0.14 -2.10 16 9 C 0.11 2.39 4.30 -3.06 -0.01 2.38 16 10 N -0.61 -14.68 3.31 -169.93 -0.56 -15.25 16 11 C -0.32 -9.10 10.56 -15.06 -0.16 -9.26 16 12 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 13 C -0.02 -0.57 5.50 -17.43 -0.10 -0.67 16 14 N -0.93 -28.96 13.70 55.49 0.76 -28.20 16 15 Si 1.07 26.83 24.53 -169.99 -4.17 22.66 16 16 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 17 H -0.30 -7.31 6.84 56.52 0.39 -6.92 16 18 H -0.28 -6.49 5.41 56.52 0.31 -6.19 16 19 C 0.16 3.10 6.09 -2.41 -0.01 3.09 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.08 1.01 5.28 -51.93 -0.27 0.73 16 24 H 0.07 1.00 6.54 -51.93 -0.34 0.66 16 25 H 0.09 1.52 7.91 -51.93 -0.41 1.11 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.40 2.77 9.10 45.56 0.41 3.19 16 28 H 0.08 1.18 8.04 -51.93 -0.42 0.77 16 29 H 0.08 1.46 7.39 -51.93 -0.38 1.07 16 30 H 0.05 1.12 6.73 -51.93 -0.35 0.77 16 31 H 0.03 0.75 3.87 -51.93 -0.20 0.55 16 32 H 0.26 8.07 8.73 -40.82 -0.36 7.72 16 33 H 0.02 0.50 8.03 -51.93 -0.42 0.08 16 34 H 0.06 1.19 6.39 -51.93 -0.33 0.86 16 LS Contribution 265.17 15.07 4.00 4.00 Total: -1.00 -32.52 265.17 -4.92 -37.44 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.09 Total: -0.14 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -0.15 Total: -4.85 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.20 Total: -43.44 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.71 Total: -15.67 kcal Atomic # 14 Polarization: 26.83 SS G_CDS: -4.17 Total: 22.66 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.52 -4.92 -37.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062938080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.317 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds