Wall clock time and date at job start Mon Mar 30 2020 03:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47211 * 2 1 4 4 C 1.52999 * 109.47211 * 179.97438 * 3 2 1 5 5 C 1.50699 * 110.88334 * 56.12238 * 4 3 2 6 6 O 1.20829 * 119.99930 * 123.88076 * 5 4 3 7 7 O 1.34231 * 120.00311 * 303.87999 * 5 4 3 8 8 C 1.55151 * 111.00407 * 180.02562 * 4 3 2 9 9 C 1.54334 * 102.94202 * 82.61492 * 8 4 3 10 10 N 1.47021 * 107.26657 * 22.19019 * 9 8 4 11 11 C 1.36934 * 125.64585 * 181.02201 * 10 9 8 12 12 H 1.07998 * 120.00457 * 170.02239 * 11 10 9 13 13 C 1.38820 * 120.00198 * 350.02375 * 11 10 9 14 14 N 1.31615 * 120.00145 * 164.74736 * 13 11 10 15 15 Si 1.86799 * 119.99690 * 344.75030 * 13 11 10 16 16 H 1.48498 * 109.47199 * 185.52925 * 15 13 11 17 17 H 1.48494 * 109.47352 * 305.53335 * 15 13 11 18 18 H 1.48507 * 109.46985 * 65.53260 * 15 13 11 19 19 C 1.47418 * 108.70678 * 1.28907 * 10 9 8 20 20 H 1.08993 * 109.47522 * 59.99537 * 1 2 3 21 21 H 1.09006 * 109.47267 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47003 * 299.99402 * 1 2 3 23 23 H 1.09007 * 109.47003 * 240.00598 * 2 1 3 24 24 H 1.09002 * 109.47357 * 120.00283 * 2 1 3 25 25 H 1.09007 * 109.46649 * 60.00381 * 3 2 1 26 26 H 1.08993 * 109.47256 * 300.00626 * 3 2 1 27 27 H 0.96697 * 117.00209 * 179.97438 * 7 5 4 28 28 H 1.08994 * 110.72285 * 324.25253 * 8 4 3 29 29 H 1.09003 * 110.72333 * 200.97542 * 8 4 3 30 30 H 1.08998 * 109.88043 * 262.77544 * 9 8 4 31 31 H 1.09000 * 110.00851 * 141.68277 * 9 8 4 32 32 H 0.97001 * 119.99609 * 354.98513 * 14 13 11 33 33 H 1.09005 * 110.36993 * 94.48023 * 19 10 9 34 34 H 1.08998 * 110.37037 * 216.80297 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.1077 0.6575 -1.1680 6 8 4.8684 1.1799 -1.9480 7 8 3.7416 -0.6221 -1.3424 8 6 4.1261 2.8909 0.0013 9 6 4.0689 3.2825 1.4931 10 7 4.0544 2.0353 2.2713 11 6 3.9869 1.9470 3.6362 12 1 3.8199 0.9900 4.1079 13 6 4.1332 3.0878 4.4136 14 7 3.7769 3.0709 5.6805 15 14 4.8355 4.6468 3.6615 16 1 5.0130 5.6714 4.7216 17 1 6.1493 4.3471 3.0377 18 1 3.9023 5.1613 2.6271 19 6 4.1311 0.8955 1.3395 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8900 25 1 1.6767 1.9563 0.8901 26 1 1.6766 1.9564 -0.8899 27 1 4.1122 -1.0845 -2.1065 28 1 3.4922 3.5477 -0.5943 29 1 5.1532 2.9099 -0.3632 30 1 3.1623 3.8540 1.6918 31 1 4.9453 3.8742 1.7572 32 1 3.3454 2.2858 6.0525 33 1 5.1656 0.5745 1.2170 34 1 3.5168 0.0698 1.6986 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062938080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:03 Heat of formation + Delta-G solvation = -91.964150 kcal Electronic energy + Delta-G solvation = -16802.156379 eV Core-core repulsion = 14120.766213 eV Total energy + Delta-G solvation = -2681.390166 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.86408 -39.45997 -37.21386 -35.98054 -34.33660 -32.07198 -30.48885 -27.61628 -25.98118 -24.40344 -22.89452 -22.22738 -20.63793 -19.51777 -18.96862 -17.87334 -17.13496 -16.66310 -16.02471 -15.52619 -15.47873 -15.02150 -14.58132 -14.43119 -14.02993 -13.62316 -13.29082 -13.07405 -13.01408 -12.88940 -12.63683 -12.36216 -12.01645 -11.68611 -11.57674 -11.46395 -11.41252 -11.16122 -11.03473 -10.71012 -9.13566 -8.65089 -5.48472 1.13130 1.41014 1.50324 1.71665 2.02909 2.54425 3.12773 3.24329 3.30880 3.68276 3.71557 4.14246 4.22737 4.25220 4.37081 4.44323 4.57309 4.66608 4.81004 4.82823 4.84106 4.95202 5.02685 5.07697 5.12921 5.31342 5.44772 5.51828 5.57973 5.59733 6.08241 6.79729 7.00765 7.39794 8.05404 8.87906 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.030144 B = 0.009686 C = 0.008371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.666026 B = 2890.066781 C = 3344.176385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C -0.093 4.093 4 C -0.064 4.064 5 C 0.512 3.488 6 O -0.540 6.540 7 O -0.494 6.494 8 C -0.103 4.103 9 C 0.101 3.899 10 N -0.626 5.626 11 C -0.308 4.308 12 H 0.051 0.949 13 C -0.076 4.076 14 N -0.963 5.963 15 Si 1.103 2.897 16 H -0.312 1.312 17 H -0.290 1.290 18 H -0.246 1.246 19 C 0.152 3.848 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.040 0.960 23 H 0.097 0.903 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.424 0.576 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.026 0.974 32 H 0.249 0.751 33 H 0.021 0.979 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.995 -5.263 -17.337 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C -0.131 4.131 4 C -0.066 4.066 5 C 0.355 3.645 6 O -0.430 6.430 7 O -0.308 6.308 8 C -0.140 4.140 9 C -0.023 4.023 10 N -0.354 5.354 11 C -0.436 4.436 12 H 0.069 0.931 13 C -0.269 4.269 14 N -0.607 5.607 15 Si 0.932 3.068 16 H -0.241 1.241 17 H -0.218 1.218 18 H -0.171 1.171 19 C 0.026 3.974 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.059 0.941 23 H 0.115 0.885 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.286 0.714 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.515 -3.429 -16.794 17.497 hybrid contribution 0.047 -2.093 0.021 2.094 sum -3.469 -5.522 -16.772 17.996 Atomic orbital electron populations 1.21732 0.95035 1.02064 1.01613 1.21816 0.96359 0.95246 1.03377 1.21484 0.89302 0.99226 1.03077 1.21749 0.98709 0.94966 0.91152 1.22825 0.76530 0.80592 0.84536 1.90681 1.35021 1.71254 1.46056 1.84652 1.68127 1.24999 1.52997 1.22615 1.02818 0.93817 0.94778 1.22173 0.98612 0.89760 0.91717 1.44808 1.87492 1.01567 1.01483 1.20042 1.46622 0.95805 0.81175 0.93142 1.27021 1.00574 1.04193 0.95095 1.70994 1.43719 1.31255 1.14722 0.83471 0.76864 0.73057 0.73438 1.24131 1.21780 1.17102 1.21636 0.97331 0.91044 0.87382 0.91696 0.91823 0.94091 0.88476 0.93448 0.91828 0.89621 0.71416 0.87452 0.90104 0.93424 0.95656 0.94225 0.96095 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.91 71.98 0.71 -2.38 16 2 C -0.13 -3.17 5.16 30.59 0.16 -3.01 16 3 C -0.09 -2.55 4.29 30.59 0.13 -2.42 16 4 C -0.06 -1.97 0.62 -51.46 -0.03 -2.00 16 5 C 0.51 13.85 6.97 71.24 0.50 14.34 16 6 O -0.54 -16.96 16.47 21.95 0.36 -16.60 16 7 O -0.49 -9.55 10.16 -51.42 -0.52 -10.07 16 8 C -0.10 -3.34 5.58 31.78 0.18 -3.16 16 9 C 0.10 4.23 4.30 86.73 0.37 4.60 16 10 N -0.63 -30.06 3.31 -691.54 -2.29 -32.35 16 11 C -0.31 -17.81 10.56 84.04 0.89 -16.92 16 12 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 13 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 14 N -0.96 -62.13 13.70 21.65 0.30 -61.83 16 15 Si 1.10 54.08 24.53 68.60 1.68 55.76 16 16 H -0.31 -15.76 7.11 99.48 0.71 -15.05 16 17 H -0.29 -13.67 6.84 99.48 0.68 -12.99 16 18 H -0.25 -10.46 5.41 99.48 0.54 -9.92 16 19 C 0.15 5.92 6.09 86.93 0.53 6.45 16 20 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 22 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 23 H 0.10 2.04 5.28 -2.38 -0.01 2.02 16 24 H 0.05 1.33 6.54 -2.39 -0.02 1.32 16 25 H 0.06 2.08 7.91 -2.38 -0.02 2.06 16 26 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.42 4.00 9.10 -74.06 -0.67 3.32 16 28 H 0.11 2.85 8.04 -2.39 -0.02 2.83 16 29 H 0.08 2.66 7.39 -2.39 -0.02 2.64 16 30 H 0.05 2.01 6.73 -2.39 -0.02 2.00 16 31 H 0.03 1.13 3.87 -2.39 -0.01 1.12 16 32 H 0.25 16.07 8.73 -92.71 -0.81 15.26 16 33 H 0.02 0.84 8.03 -2.38 -0.02 0.83 16 34 H 0.06 2.32 6.39 -2.39 -0.02 2.31 16 Total: -1.00 -71.26 265.17 3.62 -67.64 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 0.20 Total: 6.03 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 3.90 Total: -8.57 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -1.99 Total: -94.18 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.16 Total: -26.67 kcal Atomic # 14 Polarization: 54.08 SS G_CDS: 1.68 Total: 55.76 kcal Total: -71.26 3.62 -67.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062938080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.329 kcal (2) G-P(sol) polarization free energy of solvation -71.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds