Wall clock time and date at job start Mon Mar 30 2020 03:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46898 * 110.99849 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47469 * 35.00098 * 11 10 9 13 13 C 1.52995 * 109.47180 * 274.99846 * 11 10 9 14 14 C 1.53001 * 109.47479 * 300.00283 * 13 11 10 15 15 C 1.53006 * 109.46994 * 300.00217 * 14 13 11 16 16 C 1.52995 * 109.47185 * 59.99603 * 15 14 13 17 17 H 1.09002 * 109.47437 * 60.00077 * 16 15 14 18 18 C 1.50701 * 109.47174 * 180.02562 * 16 15 14 19 19 O 1.20824 * 119.99850 * 119.99848 * 18 16 15 20 20 O 1.34226 * 120.00100 * 300.00435 * 18 16 15 21 21 C 1.53001 * 109.47479 * 300.00100 * 16 15 14 22 22 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 23 23 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 24 24 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 25 25 H 1.00899 * 111.00084 * 56.04522 * 10 9 7 26 26 H 1.09001 * 109.47414 * 60.00536 * 13 11 10 27 27 H 1.09002 * 109.47437 * 180.02562 * 13 11 10 28 28 H 1.09002 * 109.46768 * 59.99612 * 14 13 11 29 29 H 1.08990 * 109.47531 * 180.02562 * 14 13 11 30 30 H 1.08993 * 109.47069 * 179.97438 * 15 14 13 31 31 H 1.09001 * 109.47092 * 299.99838 * 15 14 13 32 32 H 0.96701 * 117.00392 * 179.97438 * 20 18 16 33 33 H 1.09002 * 109.46768 * 300.00387 * 21 16 15 34 34 H 1.08999 * 109.47655 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 7 2.2057 -3.6157 0.0164 11 6 1.5053 -4.9070 0.0227 12 1 0.5919 -4.8279 -0.5668 13 6 1.1522 -5.2886 1.4616 14 6 2.4343 -5.3998 2.2891 15 6 3.3402 -6.4742 1.6842 16 6 3.6933 -6.0925 0.2453 17 1 4.2130 -5.1344 0.2406 18 6 4.5851 -7.1511 -0.3508 19 8 4.2314 -7.7542 -1.3361 20 8 5.7723 -7.4239 0.2130 21 6 2.4113 -5.9814 -0.5823 22 1 -0.4850 0.8401 -0.0041 23 1 0.6241 -2.5528 0.9015 24 1 0.6247 -2.5609 -0.8785 25 1 2.8405 -3.5453 0.7974 26 1 0.5067 -4.5233 1.8926 27 1 0.6329 -6.2470 1.4663 28 1 2.9539 -4.4416 2.2844 29 1 2.1827 -5.6721 3.3140 30 1 4.2537 -6.5531 2.2734 31 1 2.8206 -7.4324 1.6888 32 1 6.3092 -8.1111 -0.2048 33 1 1.8916 -6.9396 -0.5776 34 1 2.6628 -5.7099 -1.6075 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070501781.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:56 Heat of formation + Delta-G solvation = -137.588178 kcal Electronic energy + Delta-G solvation = -16116.449688 eV Core-core repulsion = 13433.081116 eV Total energy + Delta-G solvation = -2683.368572 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.58338 -39.70858 -37.06980 -35.87735 -34.14351 -32.01067 -30.87165 -27.79450 -25.48454 -23.86323 -23.36955 -21.98171 -19.86295 -19.07369 -18.50254 -17.76238 -16.84419 -16.60192 -16.08783 -15.82895 -15.40765 -14.94517 -14.38122 -14.19198 -13.78879 -13.51706 -13.32329 -13.25992 -12.88489 -12.67333 -12.54905 -12.42571 -12.25645 -11.95018 -11.80106 -11.47710 -11.26143 -11.12316 -11.02688 -10.63379 -9.01824 -8.20521 -6.31278 1.23787 1.42198 1.43841 1.54800 2.16896 2.41288 3.12986 3.57802 3.65082 3.88777 3.92679 4.19333 4.23888 4.45450 4.48175 4.56736 4.70909 4.73018 4.92898 5.03658 5.12214 5.13999 5.18280 5.31576 5.31854 5.42722 5.45579 5.64721 5.66306 6.06228 6.50685 6.78408 6.95692 7.04876 7.39803 8.90865 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.036337 B = 0.006098 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.372676 B = 4590.444424 C = 4835.500588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.534 4.534 8 H 0.064 0.936 9 C 0.210 3.790 10 N -0.683 5.683 11 C 0.082 3.918 12 H 0.057 0.943 13 C -0.146 4.146 14 C -0.115 4.115 15 C -0.097 4.097 16 C -0.078 4.078 17 H 0.111 0.889 18 C 0.493 3.507 19 O -0.551 6.551 20 O -0.508 6.508 21 C -0.078 4.078 22 H 0.264 0.736 23 H -0.034 1.034 24 H -0.006 1.006 25 H 0.337 0.663 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.426 0.574 33 H 0.076 0.924 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.649 -14.112 4.991 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.082 3.918 10 N -0.315 5.315 11 C -0.028 4.028 12 H 0.075 0.925 13 C -0.185 4.185 14 C -0.152 4.152 15 C -0.134 4.134 16 C -0.097 4.097 17 H 0.129 0.871 18 C 0.337 3.663 19 O -0.442 6.442 20 O -0.321 6.321 21 C -0.116 4.116 22 H 0.073 0.927 23 H -0.016 1.016 24 H 0.012 0.988 25 H 0.157 0.843 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.287 0.713 33 H 0.095 0.905 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.272 -13.855 4.234 16.683 hybrid contribution -0.133 0.599 0.224 0.653 sum 8.139 -13.256 4.457 16.181 Atomic orbital electron populations 1.70094 1.07797 1.27891 1.51687 1.25934 0.95742 1.03308 0.94694 0.85364 0.78623 0.78147 0.78347 1.20122 1.20772 1.18560 1.21575 0.93818 0.91528 1.50344 0.91741 1.19179 0.90682 0.88815 0.93077 1.60718 1.20206 1.01126 1.49491 1.21562 0.95913 0.89694 0.95671 0.92507 1.22152 0.98596 1.01854 0.95939 1.21500 0.95107 0.98942 0.99687 1.21476 1.00981 0.99194 0.91761 1.21046 0.94384 0.96680 0.97565 0.87077 1.23627 0.80296 0.81800 0.80553 1.90694 1.74610 1.51539 1.27379 1.84513 1.30253 1.58880 1.58468 1.21302 0.93985 0.98003 0.98346 0.92712 1.01647 0.98834 0.84278 0.93852 0.89946 0.92415 0.89455 0.88919 0.90504 0.71293 0.90542 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 2 C 0.00 0.07 5.46 84.66 0.46 0.54 16 3 Si 0.97 44.23 29.54 68.60 2.03 46.25 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.53 -30.36 9.32 25.60 0.24 -30.12 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.19 5.24 85.55 0.45 11.64 16 10 N -0.68 -28.51 5.76 -495.58 -2.85 -31.36 16 11 C 0.08 2.82 2.86 44.92 0.13 2.95 16 12 H 0.06 2.16 7.80 -2.39 -0.02 2.15 16 13 C -0.15 -4.20 5.52 30.59 0.17 -4.03 16 14 C -0.11 -2.68 5.67 30.60 0.17 -2.51 16 15 C -0.10 -1.93 5.14 30.59 0.16 -1.78 16 16 C -0.08 -1.94 2.39 -11.54 -0.03 -1.96 16 17 H 0.11 2.98 7.21 -2.39 -0.02 2.96 16 18 C 0.49 12.04 7.63 71.24 0.54 12.58 16 19 O -0.55 -16.96 16.74 21.97 0.37 -16.59 16 20 O -0.51 -8.86 13.33 -51.38 -0.68 -9.55 16 21 C -0.08 -2.32 4.21 30.60 0.13 -2.19 16 22 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 23 H -0.03 -1.93 7.44 -2.39 -0.02 -1.95 16 24 H -0.01 -0.38 8.06 -2.39 -0.02 -0.40 16 25 H 0.34 13.06 5.55 -89.69 -0.50 12.56 16 26 H 0.04 1.46 7.45 -2.39 -0.02 1.44 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 28 H 0.06 1.52 6.26 -2.39 -0.01 1.51 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.55 8.11 -2.39 -0.02 1.53 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.43 3.65 9.10 -74.06 -0.67 2.97 16 33 H 0.08 2.08 8.10 -2.39 -0.02 2.06 16 34 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 Total: -1.00 -68.49 277.10 1.50 -67.00 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -0.07 Total: 15.44 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 2.42 Total: -14.88 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -2.57 Total: -87.68 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.32 Total: -26.14 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -68.49 1.50 -67.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070501781.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.593 kcal (2) G-P(sol) polarization free energy of solvation -68.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds