Wall clock time and date at job start Mon Mar 30 2020 03:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00227 * 2 1 4 4 H 1.48505 * 109.47122 * 270.00313 * 3 2 1 5 5 H 1.48498 * 109.47095 * 30.00249 * 3 2 1 6 6 H 1.48499 * 109.47404 * 150.00379 * 3 2 1 7 7 C 1.38814 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00581 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99850 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47503 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46989 * 54.99566 * 11 10 9 13 13 C 1.53005 * 109.46733 * 295.00265 * 11 10 9 14 14 C 1.52999 * 109.47159 * 299.99162 * 13 11 10 15 15 C 1.52997 * 109.47317 * 300.00546 * 14 13 11 16 16 C 1.53000 * 109.47060 * 59.99960 * 15 14 13 17 17 C 1.52997 * 109.47457 * 174.99895 * 11 10 9 18 18 H 1.09002 * 109.46695 * 179.97438 * 17 11 10 19 19 C 1.50693 * 109.46989 * 299.99936 * 17 11 10 20 20 O 1.20825 * 120.00633 * 0.02562 * 19 17 11 21 21 O 1.34232 * 119.99602 * 180.02562 * 19 17 11 22 22 H 0.97006 * 119.99611 * 359.97438 * 1 2 3 23 23 H 0.96998 * 119.99710 * 359.97438 * 9 7 2 24 24 H 1.09007 * 109.47318 * 59.99754 * 10 9 7 25 25 H 1.08997 * 109.47341 * 300.00364 * 10 9 7 26 26 H 1.09000 * 109.47360 * 59.99776 * 13 11 10 27 27 H 1.09002 * 109.46935 * 179.97438 * 13 11 10 28 28 H 1.08996 * 109.46929 * 179.97438 * 14 13 11 29 29 H 1.09002 * 109.46716 * 60.00455 * 14 13 11 30 30 H 1.09002 * 109.47153 * 299.99641 * 15 14 13 31 31 H 1.09001 * 109.46832 * 179.97438 * 15 14 13 32 32 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 33 33 H 1.09004 * 109.46724 * 180.02562 * 16 15 14 34 34 H 0.96703 * 116.99917 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3799 -4.7126 -0.8432 13 6 0.2684 -4.8114 1.3059 14 6 1.2283 -4.9618 2.4879 15 6 1.9891 -6.2832 2.3621 16 6 2.7844 -6.2914 1.0551 17 6 1.8246 -6.1411 -0.1269 18 1 1.1162 -6.9696 -0.1269 19 6 2.6078 -6.1492 -1.4143 20 8 2.5627 -5.1957 -2.1551 21 8 3.3558 -7.2157 -1.7381 22 1 -0.4850 0.8401 0.0004 23 1 0.3555 -2.3880 0.0002 24 1 2.6847 -3.7145 0.8895 25 1 2.6846 -3.7145 -0.8904 26 1 -0.2736 -3.8700 1.3955 27 1 -0.4402 -5.6396 1.3053 28 1 0.6617 -4.9554 3.4190 29 1 1.9366 -4.1333 2.4883 30 1 1.2808 -7.1117 2.3617 31 1 2.6732 -6.3900 3.2040 32 1 3.4927 -5.4629 1.0555 33 1 3.3261 -7.2330 0.9653 34 1 3.8407 -7.1745 -2.5737 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084306646.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:54 Heat of formation + Delta-G solvation = -123.056579 kcal Electronic energy + Delta-G solvation = -16522.241907 eV Core-core repulsion = 13839.503472 eV Total energy + Delta-G solvation = -2682.738435 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.78763 -39.46797 -37.05447 -36.13813 -33.37319 -32.27058 -31.20881 -27.41607 -25.20763 -24.49825 -23.06611 -22.01734 -19.72816 -19.00740 -18.85619 -17.72177 -17.01141 -16.51093 -16.06759 -15.58741 -15.23097 -14.97279 -14.59465 -14.13278 -13.98775 -13.41793 -13.29640 -12.95144 -12.91810 -12.69934 -12.43047 -12.23533 -12.11649 -11.96949 -11.73393 -11.69774 -11.14831 -10.99315 -10.92132 -10.72866 -8.91704 -7.94859 -5.21806 1.27394 1.43357 1.46488 1.54626 2.17604 2.55187 3.37878 3.55363 3.73753 3.93281 4.18926 4.24065 4.32658 4.42241 4.46357 4.54511 4.65074 4.69866 4.85888 5.02586 5.08161 5.18632 5.23831 5.26085 5.39953 5.41796 5.48936 5.54315 5.66119 5.74897 6.28210 7.07571 7.33439 8.12316 8.36210 9.29127 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.030325 B = 0.007795 C = 0.006857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.095790 B = 3591.265808 C = 4082.243173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.242 4.242 8 H 0.067 0.933 9 N -0.740 5.740 10 C 0.148 3.852 11 C -0.076 4.076 12 H 0.054 0.946 13 C -0.104 4.104 14 C -0.123 4.123 15 C -0.105 4.105 16 C -0.108 4.108 17 C -0.063 4.063 18 H 0.140 0.860 19 C 0.478 3.522 20 O -0.544 6.544 21 O -0.507 6.507 22 H 0.251 0.749 23 H 0.372 0.628 24 H 0.024 0.976 25 H 0.021 0.979 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.653 -18.540 3.136 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.374 4.374 8 H 0.085 0.915 9 N -0.382 5.382 10 C 0.022 3.978 11 C -0.095 4.095 12 H 0.073 0.927 13 C -0.141 4.141 14 C -0.161 4.161 15 C -0.142 4.142 16 C -0.146 4.146 17 C -0.083 4.083 18 H 0.158 0.842 19 C 0.322 3.678 20 O -0.434 6.434 21 O -0.320 6.320 22 H 0.060 0.940 23 H 0.204 0.796 24 H 0.042 0.958 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 4.606 -18.216 3.311 19.079 hybrid contribution 0.244 1.558 -0.999 1.867 sum 4.851 -16.658 2.312 17.503 Atomic orbital electron populations 1.69819 1.06508 1.25974 1.59772 1.25554 0.96488 1.00996 1.03944 0.85136 0.77752 0.79510 0.77369 1.21660 1.21662 1.19477 1.19589 0.91195 0.85685 1.40916 0.91476 1.42498 1.05436 1.01098 1.89197 1.21154 0.94222 0.84903 0.97543 1.21070 0.96825 0.92851 0.98735 0.92710 1.21441 0.97809 1.01670 0.93192 1.21572 0.98385 0.98350 0.97759 1.21488 0.99243 0.97070 0.96398 1.21578 0.96996 1.03179 0.92821 1.21091 0.97718 0.99960 0.89493 0.84212 1.23914 0.76801 0.78983 0.88123 1.90776 1.62968 1.36572 1.53123 1.84478 1.58647 1.42537 1.46373 0.94007 0.79558 0.95846 0.96118 0.94056 0.89417 0.91042 0.94050 0.89319 0.90172 0.93117 0.88293 0.71561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.05 13.06 21.65 0.28 -61.76 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 3 Si 0.97 48.57 29.55 68.60 2.03 50.60 16 4 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.24 -14.59 9.99 84.03 0.84 -13.75 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -40.95 5.33 -343.46 -1.83 -42.79 16 10 C 0.15 6.57 4.68 86.38 0.40 6.98 16 11 C -0.08 -2.59 1.87 -10.79 -0.02 -2.61 16 12 H 0.05 2.10 8.10 -2.39 -0.02 2.08 16 13 C -0.10 -3.15 5.32 30.60 0.16 -2.99 16 14 C -0.12 -3.30 5.65 30.59 0.17 -3.13 16 15 C -0.10 -1.98 5.92 30.59 0.18 -1.80 16 16 C -0.11 -2.29 4.86 30.60 0.15 -2.15 16 17 C -0.06 -1.57 2.41 -11.54 -0.03 -1.60 16 18 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 19 C 0.48 13.37 7.31 71.23 0.52 13.90 16 20 O -0.54 -20.94 14.43 21.97 0.32 -20.63 16 21 O -0.51 -9.79 13.33 -51.43 -0.69 -10.48 16 22 H 0.25 15.47 8.31 -92.70 -0.77 14.70 16 23 H 0.37 21.66 6.85 -92.71 -0.63 21.02 16 24 H 0.02 1.03 4.83 -2.38 -0.01 1.02 16 25 H 0.02 1.03 5.42 -2.39 -0.01 1.02 16 26 H 0.04 1.56 7.18 -2.39 -0.02 1.54 16 27 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.04 1.39 6.32 -2.39 -0.02 1.37 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.32 6.54 -2.39 -0.02 1.31 16 33 H 0.10 1.59 8.11 -2.39 -0.02 1.57 16 34 H 0.42 4.97 9.10 -74.06 -0.67 4.30 16 Total: -1.00 -75.79 269.84 2.77 -73.02 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -0.19 Total: 23.44 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 2.85 Total: -11.41 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -1.55 Total: -104.55 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.37 Total: -31.10 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -75.79 2.77 -73.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084306646.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.034 kcal (2) G-P(sol) polarization free energy of solvation -75.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds