Wall clock time and date at job start Mon Mar 30 2020 03:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48500 * 109.46939 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47053 * 300.00097 * 3 2 1 6 6 H 1.48496 * 109.46981 * 60.00212 * 3 2 1 7 7 C 1.38810 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00551 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00090 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47269 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47194 * 304.99635 * 11 10 9 13 13 C 1.52999 * 109.46991 * 65.00478 * 11 10 9 14 14 C 1.52997 * 109.46991 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 11 16 16 C 1.53002 * 109.46972 * 60.00459 * 15 14 13 17 17 C 1.52997 * 109.46817 * 299.99733 * 16 15 14 18 18 H 1.09001 * 109.47502 * 300.00518 * 17 16 15 19 19 C 1.50699 * 109.47078 * 180.02562 * 17 16 15 20 20 O 1.20828 * 120.00000 * 240.00227 * 19 17 16 21 21 O 1.34231 * 120.00154 * 60.00281 * 19 17 16 22 22 H 0.97002 * 120.00534 * 0.02562 * 1 2 3 23 23 H 0.97002 * 120.00403 * 0.02562 * 9 7 2 24 24 H 1.09002 * 109.46913 * 59.99757 * 10 9 7 25 25 H 1.09001 * 109.46815 * 300.00334 * 10 9 7 26 26 H 1.09002 * 109.46719 * 299.99711 * 13 11 10 27 27 H 1.08993 * 109.47839 * 59.99553 * 13 11 10 28 28 H 1.09001 * 109.47289 * 179.97438 * 14 13 11 29 29 H 1.09000 * 109.47611 * 59.99933 * 14 13 11 30 30 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 31 31 H 1.09000 * 109.47054 * 180.02562 * 15 14 13 32 32 H 1.09002 * 109.47070 * 179.97438 * 16 15 14 33 33 H 1.08996 * 109.47407 * 59.99513 * 16 15 14 34 34 H 0.96691 * 116.99942 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3802 -4.7127 0.8421 13 6 0.2687 -4.8115 -1.3070 14 6 -0.7259 -5.9741 -1.3061 15 6 0.0345 -7.2957 -1.1801 16 6 0.8297 -7.3040 0.1270 17 6 1.8243 -6.1414 0.1261 18 1 2.5081 -6.2488 -0.7160 19 6 2.6081 -6.1499 1.4132 20 8 2.5630 -5.1965 2.1542 21 8 3.3562 -7.2164 1.7365 22 1 -0.4851 0.8400 -0.0004 23 1 0.3556 -2.3881 -0.0005 24 1 2.6848 -3.7144 0.8894 25 1 2.6848 -3.7144 -0.8905 26 1 -0.2734 -3.8701 -1.3965 27 1 0.9525 -4.9185 -2.1490 28 1 -1.2928 -5.9680 -2.2371 29 1 -1.4098 -5.8666 -0.4641 30 1 0.7182 -7.4032 -2.0221 31 1 -0.6741 -8.1240 -1.1799 32 1 1.3711 -8.2457 0.2170 33 1 0.1460 -7.1964 0.9690 34 1 3.8413 -7.1754 2.5719 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084306650.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:00 Heat of formation + Delta-G solvation = -103.583051 kcal Electronic energy + Delta-G solvation = -16302.308043 eV Core-core repulsion = 13620.414044 eV Total energy + Delta-G solvation = -2681.893999 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.52538 -38.08277 -35.96752 -34.47724 -31.87336 -31.14866 -29.50620 -25.55394 -23.84408 -22.94889 -21.10130 -20.55680 -19.52263 -17.78132 -17.07552 -16.48967 -15.56371 -14.67441 -14.57825 -14.22372 -13.79644 -13.54384 -13.14979 -12.97592 -12.41975 -12.32975 -11.79089 -11.56576 -11.26397 -11.18303 -10.85198 -10.78787 -10.69687 -10.54857 -10.19761 -10.06726 -9.95488 -9.59643 -9.50768 -8.71686 -6.76091 -5.66436 -2.92870 2.41386 3.17794 3.49578 3.54865 3.57390 4.62817 4.73653 4.79076 4.88360 5.23820 5.33329 5.44687 5.50717 5.62353 5.66849 5.68551 5.73008 5.91923 6.08065 6.14944 6.22380 6.25838 6.33420 6.44930 6.57128 6.60105 6.78137 7.00466 7.15644 7.80374 8.09497 8.53323 9.64011 10.24249 10.59286 11.57062 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.031747 B = 0.007275 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.750627 B = 3847.740718 C = 4536.310130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.018 4.018 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.230 4.230 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.145 3.855 11 C -0.079 4.079 12 H 0.078 0.922 13 C -0.110 4.110 14 C -0.124 4.124 15 C -0.116 4.116 16 C -0.108 4.108 17 C -0.069 4.069 18 H 0.106 0.894 19 C 0.472 3.528 20 O -0.490 6.490 21 O -0.524 6.524 22 H 0.253 0.747 23 H 0.383 0.617 24 H 0.044 0.956 25 H 0.010 0.990 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.815 -17.559 -1.029 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.213 4.213 3 Si 0.737 3.263 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.362 4.362 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.018 3.982 11 C -0.097 4.097 12 H 0.096 0.904 13 C -0.147 4.147 14 C -0.161 4.161 15 C -0.153 4.153 16 C -0.146 4.146 17 C -0.089 4.089 18 H 0.124 0.876 19 C 0.314 3.686 20 O -0.376 6.376 21 O -0.336 6.336 22 H 0.063 0.937 23 H 0.216 0.784 24 H 0.062 0.938 25 H 0.028 0.972 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 1.728 -17.181 -1.192 17.308 hybrid contribution 0.549 1.037 0.614 1.325 sum 2.277 -16.143 -0.578 16.313 Atomic orbital electron populations 1.69666 1.05036 1.25297 1.58544 1.24706 0.95527 0.97545 1.03558 0.86123 0.78767 0.84308 0.77096 1.20663 1.21985 1.21964 1.19288 0.91026 0.84270 1.41572 0.91328 1.42300 1.05732 0.99887 1.89346 1.21004 0.93463 0.85306 0.98468 1.21237 0.97660 0.91911 0.98932 0.90352 1.21549 0.97689 0.98909 0.96572 1.21615 0.98189 0.94497 1.01803 1.21529 0.98910 0.97937 0.96962 1.21509 0.97312 0.96654 0.99098 1.21103 0.96741 0.98519 0.92524 0.87601 1.23688 0.77099 0.79278 0.88563 1.90780 1.61139 1.34475 1.51228 1.84536 1.59311 1.44564 1.45198 0.93726 0.78355 0.93840 0.97186 0.90102 0.92074 0.92002 0.91938 0.91749 0.91861 0.90953 0.91496 0.73770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.26 13.06 55.49 0.72 -28.54 16 2 C -0.02 -0.54 5.50 -17.43 -0.10 -0.64 16 3 Si 0.91 23.32 29.55 -169.99 -5.02 18.30 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 6 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 7 C -0.23 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.73 -19.56 5.33 -59.91 -0.32 -19.88 16 10 C 0.14 3.17 5.39 -4.04 -0.02 3.15 16 11 C -0.08 -1.34 1.39 -90.62 -0.13 -1.47 16 12 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 13 C -0.11 -1.70 5.08 -26.73 -0.14 -1.84 16 14 C -0.12 -1.51 5.92 -26.73 -0.16 -1.66 16 15 C -0.12 -1.18 5.92 -26.73 -0.16 -1.33 16 16 C -0.11 -1.18 5.14 -26.73 -0.14 -1.32 16 17 C -0.07 -0.94 2.16 -91.77 -0.20 -1.14 16 18 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 19 C 0.47 6.94 7.31 36.01 0.26 7.20 16 20 O -0.49 -9.30 14.43 -18.75 -0.27 -9.57 16 21 O -0.52 -5.80 13.33 -39.26 -0.52 -6.32 16 22 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.38 10.63 6.85 -40.82 -0.28 10.35 16 24 H 0.04 1.03 5.42 -51.93 -0.28 0.75 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.08 1.48 7.18 -51.93 -0.37 1.11 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.40 2.88 9.10 45.56 0.41 3.29 16 LS Contribution 276.86 15.07 4.17 4.17 Total: -1.00 -34.15 276.86 -6.45 -40.60 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.29 Total: 7.25 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.92 Total: -6.01 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.41 Total: -48.42 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.79 Total: -15.89 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.02 Total: 18.30 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -34.15 -6.45 -40.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084306650.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.985 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds