Wall clock time and date at job start Mon Mar 30 2020 03:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48500 * 109.46939 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47053 * 300.00097 * 3 2 1 6 6 H 1.48496 * 109.46981 * 60.00212 * 3 2 1 7 7 C 1.38810 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00551 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00090 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47269 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47194 * 304.99635 * 11 10 9 13 13 C 1.52999 * 109.46991 * 65.00478 * 11 10 9 14 14 C 1.52997 * 109.46991 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 11 16 16 C 1.53002 * 109.46972 * 60.00459 * 15 14 13 17 17 C 1.52997 * 109.46817 * 299.99733 * 16 15 14 18 18 H 1.09001 * 109.47502 * 300.00518 * 17 16 15 19 19 C 1.50699 * 109.47078 * 180.02562 * 17 16 15 20 20 O 1.20828 * 120.00000 * 240.00227 * 19 17 16 21 21 O 1.34231 * 120.00154 * 60.00281 * 19 17 16 22 22 H 0.97002 * 120.00534 * 0.02562 * 1 2 3 23 23 H 0.97002 * 120.00403 * 0.02562 * 9 7 2 24 24 H 1.09002 * 109.46913 * 59.99757 * 10 9 7 25 25 H 1.09001 * 109.46815 * 300.00334 * 10 9 7 26 26 H 1.09002 * 109.46719 * 299.99711 * 13 11 10 27 27 H 1.08993 * 109.47839 * 59.99553 * 13 11 10 28 28 H 1.09001 * 109.47289 * 179.97438 * 14 13 11 29 29 H 1.09000 * 109.47611 * 59.99933 * 14 13 11 30 30 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 31 31 H 1.09000 * 109.47054 * 180.02562 * 15 14 13 32 32 H 1.09002 * 109.47070 * 179.97438 * 16 15 14 33 33 H 1.08996 * 109.47407 * 59.99513 * 16 15 14 34 34 H 0.96691 * 116.99942 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3802 -4.7127 0.8421 13 6 0.2687 -4.8115 -1.3070 14 6 -0.7259 -5.9741 -1.3061 15 6 0.0345 -7.2957 -1.1801 16 6 0.8297 -7.3040 0.1270 17 6 1.8243 -6.1414 0.1261 18 1 2.5081 -6.2488 -0.7160 19 6 2.6081 -6.1499 1.4132 20 8 2.5630 -5.1965 2.1542 21 8 3.3562 -7.2164 1.7365 22 1 -0.4851 0.8400 -0.0004 23 1 0.3556 -2.3881 -0.0005 24 1 2.6848 -3.7144 0.8894 25 1 2.6848 -3.7144 -0.8905 26 1 -0.2734 -3.8701 -1.3965 27 1 0.9525 -4.9185 -2.1490 28 1 -1.2928 -5.9680 -2.2371 29 1 -1.4098 -5.8666 -0.4641 30 1 0.7182 -7.4032 -2.0221 31 1 -0.6741 -8.1240 -1.1799 32 1 1.3711 -8.2457 0.2170 33 1 0.1460 -7.1964 0.9690 34 1 3.8413 -7.1754 2.5719 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084306650.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:00 Heat of formation + Delta-G solvation = -127.755565 kcal Electronic energy + Delta-G solvation = -16303.356242 eV Core-core repulsion = 13620.414044 eV Total energy + Delta-G solvation = -2682.942198 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.70446 -39.24445 -37.09045 -36.36307 -33.68318 -32.27340 -31.20771 -27.24997 -25.17810 -24.63885 -22.39283 -21.75753 -20.71434 -19.18486 -18.89076 -17.69731 -16.87694 -16.52397 -15.90139 -15.53777 -15.20823 -14.97683 -14.57765 -14.53213 -13.83366 -13.50753 -13.29568 -12.92119 -12.77487 -12.67279 -12.41102 -12.26670 -12.08911 -11.89657 -11.86111 -11.73064 -11.37444 -11.10684 -10.94870 -10.71233 -8.95787 -7.96117 -5.23995 1.26533 1.43877 1.46047 1.56087 2.15893 2.54533 3.36732 3.53233 3.70187 3.89779 4.14025 4.19200 4.37241 4.44394 4.45282 4.53701 4.60287 4.64334 4.83747 4.97965 5.11599 5.12825 5.23440 5.30847 5.35219 5.38144 5.45492 5.51303 5.59351 5.73365 6.26759 7.06736 7.32104 8.09418 8.34015 9.28017 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.031747 B = 0.007275 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.750627 B = 3847.740718 C = 4536.310130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.741 5.741 10 C 0.143 3.857 11 C -0.068 4.068 12 H 0.053 0.947 13 C -0.105 4.105 14 C -0.119 4.119 15 C -0.109 4.109 16 C -0.102 4.102 17 C -0.067 4.067 18 H 0.126 0.874 19 C 0.479 3.521 20 O -0.543 6.543 21 O -0.507 6.507 22 H 0.252 0.748 23 H 0.373 0.627 24 H 0.028 0.972 25 H 0.014 0.986 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.616 -19.457 -1.763 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.383 5.383 10 C 0.017 3.983 11 C -0.087 4.087 12 H 0.072 0.928 13 C -0.143 4.143 14 C -0.157 4.157 15 C -0.147 4.147 16 C -0.139 4.139 17 C -0.086 4.086 18 H 0.144 0.856 19 C 0.323 3.677 20 O -0.433 6.433 21 O -0.320 6.320 22 H 0.061 0.939 23 H 0.205 0.795 24 H 0.046 0.954 25 H 0.032 0.968 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 2.569 -19.140 -1.925 19.407 hybrid contribution 0.353 1.559 0.875 1.823 sum 2.922 -17.580 -1.050 17.852 Atomic orbital electron populations 1.69827 1.06563 1.26006 1.59685 1.25585 0.96510 1.01095 1.03766 0.85037 0.78047 0.79592 0.76875 1.19312 1.21466 1.21938 1.19662 0.91322 0.85640 1.41072 0.91272 1.42501 1.05494 1.01070 1.89254 1.21134 0.94300 0.85258 0.97583 1.21051 0.96576 0.92210 0.98882 0.92816 1.21473 0.98160 0.98821 0.95842 1.21587 0.97472 0.94327 1.02284 1.21525 0.99293 0.97013 0.96839 1.21531 0.96715 0.96168 0.99507 1.21105 0.97435 0.97318 0.92744 0.85617 1.23869 0.76648 0.78960 0.88251 1.90774 1.63033 1.36570 1.52960 1.84475 1.58568 1.42552 1.46440 0.93944 0.79452 0.95419 0.96771 0.93921 0.91224 0.90641 0.92651 0.90336 0.89342 0.88380 0.92128 0.71519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.08 13.06 21.65 0.28 -61.79 16 2 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 3 Si 0.98 48.49 29.55 68.60 2.03 50.52 16 4 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 6 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 7 C -0.25 -14.81 9.99 84.03 0.84 -13.97 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.74 -41.23 5.33 -343.45 -1.83 -43.06 16 10 C 0.14 6.45 5.39 86.38 0.47 6.91 16 11 C -0.07 -2.36 1.39 -10.79 -0.02 -2.37 16 12 H 0.05 2.11 8.10 -2.39 -0.02 2.09 16 13 C -0.11 -3.27 5.08 30.59 0.16 -3.11 16 14 C -0.12 -2.70 5.92 30.59 0.18 -2.52 16 15 C -0.11 -1.80 5.92 30.59 0.18 -1.62 16 16 C -0.10 -1.89 5.14 30.59 0.16 -1.74 16 17 C -0.07 -1.69 2.16 -11.54 -0.02 -1.71 16 18 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 19 C 0.48 13.50 7.31 71.24 0.52 14.02 16 20 O -0.54 -20.90 14.43 21.96 0.32 -20.59 16 21 O -0.51 -9.87 13.33 -51.43 -0.69 -10.56 16 22 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 23 H 0.37 21.79 6.85 -92.71 -0.63 21.16 16 24 H 0.03 1.36 5.42 -2.39 -0.01 1.35 16 25 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.04 1.63 7.18 -2.39 -0.02 1.61 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.10 1.40 8.11 -2.39 -0.02 1.38 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.42 4.99 9.10 -74.06 -0.67 4.32 16 Total: -1.00 -75.46 276.86 2.83 -72.62 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -0.21 Total: 23.21 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 2.93 Total: -10.36 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -1.55 Total: -104.86 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.37 Total: -31.14 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Total: -75.46 2.83 -72.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084306650.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.131 kcal (2) G-P(sol) polarization free energy of solvation -75.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds