Wall clock time and date at job start Mon Mar 30 2020 03:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46978 * 180.02562 * 11 10 9 13 13 H 1.09005 * 110.01663 * 305.69909 * 12 11 10 14 14 C 1.54267 * 110.03514 * 67.09298 * 12 11 10 15 15 C 1.55006 * 104.13810 * 95.68588 * 14 12 11 16 16 C 1.54892 * 102.75590 * 37.94971 * 15 14 12 17 17 C 1.53879 * 110.03131 * 184.31176 * 12 11 10 18 18 H 1.08994 * 110.03255 * 0.02562 * 17 12 11 19 19 C 1.50701 * 110.03102 * 121.42959 * 17 12 11 20 20 O 1.20821 * 120.00164 * 359.97438 * 19 17 12 21 21 O 1.34229 * 119.99715 * 180.02562 * 19 17 12 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.00898 * 110.99877 * 56.04636 * 10 9 7 26 26 H 1.08995 * 109.47087 * 299.99901 * 11 10 9 27 27 H 1.09002 * 109.46903 * 59.99922 * 11 10 9 28 28 H 1.08999 * 110.48577 * 214.35092 * 14 12 11 29 29 H 1.09000 * 110.48525 * 336.99160 * 14 12 11 30 30 H 1.09000 * 110.76605 * 279.63228 * 15 14 12 31 31 H 1.08998 * 110.90601 * 156.33388 * 15 14 12 32 32 H 1.09002 * 110.49006 * 203.36532 * 16 15 14 33 33 H 1.09006 * 110.59546 * 80.77926 * 16 15 14 34 34 H 0.96700 * 117.00375 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9071 0.0011 12 6 2.5300 -6.0431 0.0018 13 1 3.2237 -5.9202 -0.8300 14 6 3.3028 -6.0569 1.3368 15 6 2.5485 -7.1001 2.2002 16 6 2.1738 -8.1920 1.1674 17 6 1.8127 -7.4002 -0.1063 18 1 0.7346 -7.2494 -0.1596 19 6 2.2915 -8.1412 -1.3280 20 8 3.1234 -7.6435 -2.0491 21 8 1.7929 -9.3538 -1.6156 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8404 -3.5487 0.7819 26 1 0.8806 -4.9812 0.8913 27 1 0.8799 -4.9817 -0.8886 28 1 4.3350 -6.3684 1.1769 29 1 3.2685 -5.0745 1.8077 30 1 1.6531 -6.6620 2.6410 31 1 3.1987 -7.5076 2.9743 32 1 1.3158 -8.7676 1.5149 33 1 3.0226 -8.8498 0.9799 34 1 2.1303 -9.7902 -2.4099 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084307456.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:50 Heat of formation + Delta-G solvation = -113.233589 kcal Electronic energy + Delta-G solvation = -15748.198080 eV Core-core repulsion = 13065.885602 eV Total energy + Delta-G solvation = -2682.312478 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.62774 -38.16110 -36.10580 -34.83104 -32.41015 -29.74318 -29.40158 -26.36737 -24.14417 -22.46544 -21.58231 -20.41140 -19.03129 -18.06558 -17.10228 -16.38456 -15.85581 -15.28254 -14.65151 -14.51103 -14.20147 -13.53251 -12.96233 -12.92346 -12.45749 -11.93054 -11.83008 -11.59239 -11.32074 -11.28703 -11.02532 -10.87358 -10.77432 -10.60754 -10.52364 -10.31688 -10.15560 -9.82850 -9.12856 -8.46392 -7.24826 -6.01495 -4.03133 2.19232 2.97760 3.32657 3.39793 3.45426 4.38637 4.46486 4.50970 4.81446 5.23554 5.26800 5.34092 5.34775 5.43567 5.49903 5.62071 5.72698 5.79139 5.85265 5.99713 6.11386 6.24373 6.29998 6.42736 6.47021 6.68877 7.28070 7.44119 7.81419 7.85721 8.15162 8.43160 8.64701 9.06688 9.61865 11.09801 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.043261 B = 0.005136 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.080158 B = 5450.819395 C = 5667.823570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.689 5.689 11 C 0.068 3.932 12 C -0.089 4.089 13 H 0.104 0.896 14 C -0.120 4.120 15 C -0.125 4.125 16 C -0.108 4.108 17 C -0.082 4.082 18 H 0.111 0.889 19 C 0.483 3.517 20 O -0.507 6.507 21 O -0.519 6.519 22 H 0.260 0.740 23 H -0.014 1.014 24 H 0.027 0.973 25 H 0.328 0.672 26 H 0.020 0.980 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.079 -18.042 2.503 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.320 5.320 11 C -0.062 4.062 12 C -0.107 4.107 13 H 0.123 0.877 14 C -0.157 4.157 15 C -0.163 4.163 16 C -0.146 4.146 17 C -0.102 4.102 18 H 0.129 0.871 19 C 0.325 3.675 20 O -0.394 6.394 21 O -0.331 6.331 22 H 0.070 0.930 23 H 0.004 0.996 24 H 0.045 0.955 25 H 0.146 0.854 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 3.086 -17.556 1.961 17.933 hybrid contribution 0.130 0.601 0.239 0.660 sum 3.216 -16.955 2.200 17.397 Atomic orbital electron populations 1.69975 1.06102 1.26647 1.51131 1.24995 0.94875 0.99390 0.95367 0.86426 0.80099 0.83318 0.77477 1.19624 1.21001 1.21108 1.21242 0.93588 0.90243 1.50057 0.91881 1.19561 0.90626 0.87434 0.95734 1.60673 1.21181 1.01118 1.49029 1.21915 0.94558 0.90109 0.99591 1.21924 0.98073 0.90777 0.99952 0.87747 1.22453 0.98798 0.99623 0.94853 1.22556 1.00630 0.95864 0.97222 1.22293 1.01698 0.97511 0.93065 1.21774 1.02967 0.95214 0.90259 0.87097 1.23546 0.78519 0.78923 0.86531 1.90720 1.31467 1.67216 1.50014 1.84553 1.66543 1.32828 1.49166 0.92995 0.99620 0.95472 0.85435 0.96193 0.91930 0.91513 0.90665 0.90981 0.91268 0.90551 0.91362 0.73564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.82 9.32 -34.44 -0.32 -15.14 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.19 5.17 5.44 -4.97 -0.03 5.15 16 10 N -0.69 -15.15 6.49 -115.05 -0.75 -15.89 16 11 C 0.07 1.22 4.85 -3.82 -0.02 1.21 16 12 C -0.09 -1.31 2.75 -89.50 -0.25 -1.56 16 13 H 0.10 1.81 6.40 -51.93 -0.33 1.48 16 14 C -0.12 -1.54 6.22 -25.01 -0.16 -1.69 16 15 C -0.13 -1.30 6.91 -24.67 -0.17 -1.47 16 16 C -0.11 -1.06 6.34 -25.07 -0.16 -1.22 16 17 C -0.08 -1.00 3.06 -90.65 -0.28 -1.27 16 18 H 0.11 1.25 7.67 -51.93 -0.40 0.86 16 19 C 0.48 6.15 7.47 36.01 0.27 6.42 16 20 O -0.51 -8.24 15.97 -18.75 -0.30 -8.54 16 21 O -0.52 -4.95 13.41 -39.25 -0.53 -5.48 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 23 H -0.01 -0.39 8.14 -51.93 -0.42 -0.82 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.33 6.80 7.01 -39.29 -0.28 6.52 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.04 6.35 -51.93 -0.33 0.71 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 34 H 0.41 2.18 9.10 45.56 0.41 2.60 16 LS Contribution 283.48 15.07 4.27 4.27 Total: -1.00 -33.03 283.48 -7.04 -40.08 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.26 Total: 3.17 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -1.20 Total: -8.08 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -0.01 Total: -42.37 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.83 Total: -14.02 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.03 -7.04 -40.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084307456.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.156 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds