Wall clock time and date at job start Mon Mar 30 2020 03:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.46906 * 110.99793 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46978 * 180.02562 * 11 10 9 13 13 H 1.09005 * 110.01663 * 305.69909 * 12 11 10 14 14 C 1.54267 * 110.03514 * 67.09298 * 12 11 10 15 15 C 1.55006 * 104.13810 * 95.68588 * 14 12 11 16 16 C 1.54892 * 102.75590 * 37.94971 * 15 14 12 17 17 C 1.53879 * 110.03131 * 184.31176 * 12 11 10 18 18 H 1.08994 * 110.03255 * 0.02562 * 17 12 11 19 19 C 1.50701 * 110.03102 * 121.42959 * 17 12 11 20 20 O 1.20821 * 120.00164 * 359.97438 * 19 17 12 21 21 O 1.34229 * 119.99715 * 180.02562 * 19 17 12 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.00898 * 110.99877 * 56.04636 * 10 9 7 26 26 H 1.08995 * 109.47087 * 299.99901 * 11 10 9 27 27 H 1.09002 * 109.46903 * 59.99922 * 11 10 9 28 28 H 1.08999 * 110.48577 * 214.35092 * 14 12 11 29 29 H 1.09000 * 110.48525 * 336.99160 * 14 12 11 30 30 H 1.09000 * 110.76605 * 279.63228 * 15 14 12 31 31 H 1.08998 * 110.90601 * 156.33388 * 15 14 12 32 32 H 1.09002 * 110.49006 * 203.36532 * 16 15 14 33 33 H 1.09006 * 110.59546 * 80.77926 * 16 15 14 34 34 H 0.96700 * 117.00375 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9071 0.0011 12 6 2.5300 -6.0431 0.0018 13 1 3.2237 -5.9202 -0.8300 14 6 3.3028 -6.0569 1.3368 15 6 2.5485 -7.1001 2.2002 16 6 2.1738 -8.1920 1.1674 17 6 1.8127 -7.4002 -0.1063 18 1 0.7346 -7.2494 -0.1596 19 6 2.2915 -8.1412 -1.3280 20 8 3.1234 -7.6435 -2.0491 21 8 1.7929 -9.3538 -1.6156 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8404 -3.5487 0.7819 26 1 0.8806 -4.9812 0.8913 27 1 0.8799 -4.9817 -0.8886 28 1 4.3350 -6.3684 1.1769 29 1 3.2685 -5.0745 1.8077 30 1 1.6531 -6.6620 2.6410 31 1 3.1987 -7.5076 2.9743 32 1 1.3158 -8.7676 1.5149 33 1 3.0226 -8.8498 0.9799 34 1 2.1303 -9.7902 -2.4099 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084307456.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:50 Heat of formation + Delta-G solvation = -137.267344 kcal Electronic energy + Delta-G solvation = -15749.240261 eV Core-core repulsion = 13065.885602 eV Total energy + Delta-G solvation = -2683.354660 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.63733 -39.25608 -37.07445 -36.57450 -34.47146 -30.99684 -30.59060 -28.17656 -25.55395 -23.84805 -23.25447 -21.42634 -20.16628 -19.10283 -18.55931 -18.01927 -16.99476 -16.78379 -16.32224 -15.76938 -15.46240 -14.96188 -14.56639 -14.16676 -13.99103 -13.45449 -13.24755 -12.93581 -12.76170 -12.66508 -12.50932 -12.25284 -12.05201 -11.88872 -11.78250 -11.66725 -11.48515 -11.25077 -11.19371 -10.67438 -9.10657 -8.23773 -6.35076 1.20398 1.40681 1.41897 1.55940 2.09887 2.39931 3.09568 3.34426 3.55152 3.70968 3.96838 4.27353 4.34364 4.44892 4.46201 4.53099 4.60909 4.75644 4.83016 4.99367 5.03072 5.12028 5.14655 5.25491 5.29985 5.37646 5.44765 5.60279 5.65116 6.01378 6.44686 6.72684 6.88839 7.00558 7.36135 8.88250 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.043261 B = 0.005136 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.080158 B = 5450.819395 C = 5667.823570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.692 5.692 11 C 0.070 3.930 12 C -0.083 4.083 13 H 0.076 0.924 14 C -0.121 4.121 15 C -0.119 4.119 16 C -0.099 4.099 17 C -0.084 4.084 18 H 0.121 0.879 19 C 0.490 3.510 20 O -0.550 6.550 21 O -0.507 6.507 22 H 0.266 0.734 23 H -0.035 1.035 24 H -0.004 1.004 25 H 0.336 0.664 26 H 0.029 0.971 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.679 -18.983 3.382 19.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.324 5.324 11 C -0.059 4.059 12 C -0.102 4.102 13 H 0.095 0.905 14 C -0.159 4.159 15 C -0.156 4.156 16 C -0.136 4.136 17 C -0.103 4.103 18 H 0.138 0.862 19 C 0.334 3.666 20 O -0.440 6.440 21 O -0.320 6.320 22 H 0.074 0.926 23 H -0.017 1.017 24 H 0.014 0.986 25 H 0.155 0.845 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 3.685 -18.550 2.841 19.125 hybrid contribution -0.098 0.809 -0.075 0.819 sum 3.587 -17.741 2.767 18.310 Atomic orbital electron populations 1.70095 1.07818 1.28001 1.51536 1.25965 0.95813 1.03426 0.94475 0.85255 0.78871 0.78143 0.77836 1.18739 1.20420 1.19995 1.21581 0.93795 0.91483 1.50653 0.91865 1.19208 0.90650 0.88942 0.93195 1.60536 1.20646 1.01614 1.49627 1.21959 0.95348 0.89294 0.99311 1.21749 0.96970 0.91208 1.00224 0.90520 1.22452 0.99319 0.99991 0.94100 1.22546 1.00600 0.95104 0.97391 1.22303 1.02970 0.97160 0.91188 1.21763 1.03028 0.93966 0.91552 0.86162 1.23575 0.77620 0.79404 0.86048 1.90717 1.33516 1.68398 1.51398 1.84497 1.65854 1.31358 1.50277 0.92550 1.01747 0.98550 0.84512 0.95251 0.93215 0.90888 0.92042 0.91037 0.89144 0.88210 0.90584 0.71245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.54 -31.55 9.32 25.60 0.24 -31.32 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 9 C 0.21 11.55 5.44 85.56 0.47 12.01 16 10 N -0.69 -31.31 6.49 -517.92 -3.36 -34.67 16 11 C 0.07 2.57 4.85 86.30 0.42 2.99 16 12 C -0.08 -2.43 2.75 -10.07 -0.03 -2.46 16 13 H 0.08 2.73 6.40 -2.38 -0.02 2.71 16 14 C -0.12 -2.98 6.22 31.71 0.20 -2.79 16 15 C -0.12 -2.15 6.91 31.93 0.22 -1.93 16 16 C -0.10 -1.63 6.34 31.67 0.20 -1.43 16 17 C -0.08 -1.89 3.06 -10.81 -0.03 -1.92 16 18 H 0.12 2.51 7.67 -2.39 -0.02 2.50 16 19 C 0.49 11.86 7.47 71.24 0.53 12.39 16 20 O -0.55 -17.83 15.97 21.98 0.35 -17.48 16 21 O -0.51 -8.45 13.41 -51.40 -0.69 -9.14 16 22 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 23 H -0.04 -2.05 8.14 -2.39 -0.02 -2.07 16 24 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.34 14.21 7.01 -89.70 -0.63 13.59 16 26 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 29 H 0.06 1.67 6.35 -2.39 -0.02 1.66 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.18 7.85 -2.38 -0.02 1.16 16 34 H 0.43 3.57 9.10 -74.06 -0.67 2.90 16 Total: -1.00 -71.98 283.48 1.09 -70.89 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -0.20 Total: 14.28 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 2.67 Total: -13.92 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -3.08 Total: -91.70 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.34 Total: -26.61 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.98 1.09 -70.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084307456.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.373 kcal (2) G-P(sol) polarization free energy of solvation -71.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds